Clone Sequence Records
BO12730.3prime Sequence
883 bp (861 high quality bases) assembled on 2006-05-08
> BO12730.3prime
ATGGTCTAGAAAGCTTGCATCTAACCTAAGAATCTCAGTGATTTGGAAAC
TAATAAGATCGCTTTCGCTGTGTCCGGATTCAGCAAGTGAGTCCTGTGGC
CCGAAAACTGAGCAATTTCCGGTTTGTTTTACAAAGGATCGATGCCGTTT
GCCAAAGGATCGACTGCTCCGCACAAAAGTTCGGGTTGCACTTGAGGGCA
CTTGAGCTTCGGAAGCAACTGAGGAATCGGGCTCCAGATTATCCCTGCAT
ATCAAGTCCCTCAGCTTGGCCAGCACGGAGTACAGTATCTTAAGGCGCTT
CACGATGCGCTTGGGATCCACTGGGACGTCCAGGTTGACCACGGCCTGGC
ACTCGCGCAGGATCAGAATGAGGTCCTTGTGCACCCGCTTGCCATCTTCA
CTGAGTCCCGAGTAATTGACGGGCAGCCGAAAGTGATCCACCACCACTCC
GCCCCTCTGGACAATCAGCTTCAGATGGCTTTTGTCCTGTACGTGGATCC
TCTCGCCCAGCATGTCCAGGTAGTTGTTGATCAGGGAGCAGCTATCGATG
ATTTCGTGGATGACGTTCCTAAAGATCAGCAGCTCCTGGTTAAAATGCTC
CTGCAAGACCTCCGCGTGGTGTGCGGATGAAGTGGACTCTGGCAGCTGGA
GAGCGGGCACAATGCACGCATCCAGGGATTCCAGTGAGGCCAGGCAGCTC
CTGACAATCGTCTTCGTTTTGATGTCCTGCGAGAAGGCTATGGCCAGAAC
CCCAATCTGCTGAATGCGATCCATGTTCGTGTCGAATGCGGAGATTAGCT
CCTGAGCTCCCGCAGGATCCCTTTGCAGTGCATCCTTTAGCTTCTCCACC
GAAGCGTTTTCCAGATCTATCAGACTGACGAAC
BO12730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17957-PA | 1593 | Sry-alpha-RA | 726..1590 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 2216..3080 | 883..19 | 4325 | 100 | Minus |
| Sry-alpha-RB | 3353 | CG17957-RB | 2269..3133 | 883..19 | 4325 | 100 | Minus |
| Sry-alpha-RA | 1855 | CG17957-RA | 771..1635 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041987..30042851 | 883..19 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:28:02 has no hits.
BO12730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:02 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17957-PA | 726..1593 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:48 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17957-PA | 726..1593 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:26:03 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 771..1635 | 19..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:58:01 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 771..1635 | 19..883 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:58:01 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041987..30042851 | 19..883 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:26:03 Download gff for
BO12730.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25867709..25868573 | 19..883 | 100 | | Minus |
BO12730.5prime Sequence
762 bp (761 high quality bases) assembled on 2006-05-08
> BO12730.5prime
GAAGTTATCAGTCGACATGGAACAGCTATTGGCCCAATTACACACTTGCA
GTGAGCTGATTGCAGAGGGCTACAGCAGCACCGGCAACATTGGCTGGCTG
AACGAGTTCTGCGCCACTTTCCTGGACTTCGCCAGCGATCTGAAGGCTAG
GCTGCCGGAGGTGGCGCCCAGTGGCGCAAACCTTGATGTGGAGACCATCT
TCCTGTGCCTCACCCAGGTGGTAACCTGCATCACCCACCTAGAGCGGACC
ATCAGCATGGAGGCACCGCATATGACCAGGCAGCACTTCCTCGACCGCTT
GGACTGGTGCTTGCGGCGACTGCTCGTCTCCTTGACGCAACTGGAAGGCA
ACGTGACCCCAGTCAAGAACCTAGAGGATCACTCCTTCGTTGAGCTCATG
GACCTGGCTCTGGACCACTTGGATGACTACATGGAGAAGCTGGCCCAGCA
GAGAAACAACTCGCTGCACATTCTAGAAGAGAGCTTCACGGAAGACACCT
ACCAGCTGGCCAGCATAGTTAATCACATCGTTCGCCACGCCCTGGCCTTT
GCCAATGTGGCCATTCATTCGGACAAGAAGGCTTTGACGGCTTTGTGCGA
GACCTTGCTCGCCGAATGTGCCACTTTCCACGAGGAGGCGGGCGAGCCCA
ACAGTGGTCATCGGAAGCTGGAGGCCCTCTCCCTGGAACGTGCCCTCTAT
GCCCTGGAATCCTTTCTCAATGAGGCGCTGCTGCACTTGCTGTTCGTCAG
TCTGATAGATCT
BO12730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17957-PA | 1593 | Sry-alpha-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 1490..2236 | 16..762 | 3735 | 100 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 1543..2289 | 16..762 | 3735 | 100 | Plus |
| Sry-alpha-RA | 1855 | CG17957-RA | 45..791 | 16..762 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041261..30042007 | 16..762 | 3735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:50 has no hits.
BO12730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:03 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17957-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:50 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17957-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:06 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..791 | 9..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:13 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 42..791 | 9..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:13 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041258..30042007 | 9..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:06 Download gff for
BO12730.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25866980..25867729 | 9..762 | 99 | | Plus |
BO12730.complete Sequence
1624 bp assembled on 2006-10-11
GenBank Submission: FJ632538
> BO12730.complete
GAAGTTATCAGTCGACATGGAACAGCTATTGGCCCAATTACACACTTGCA
GTGAGCTGATTGCAGAGGGCTACAGCAGCACCGGCAACATTGGCTGGCTG
AACGAGTTCTGCGCCACTTTCCTGGACTTCGCCAGCGATCTGAAGGCTAG
GCTGCCGGAGGTGGCGCCCAGTGGCGCAAACCTTGATGTGGAGACCATCT
TCCTGTGCCTCACCCAGGTGGTAACCTGCATCACCCACCTAGAGCGGACC
ATCAGCATGGAGGCACCGCATATGACCAGGCAGCACTTCCTCGACCGCTT
GGACTGGTGCTTGCGGCGACTGCTCGTCTCCTTGACGCAACTGGAAGGCA
ACGTGACCCCAGTCAAGAACCTAGAGGATCACTCCTTCGTTGAGCTCATG
GACCTGGCTCTGGACCACTTGGATGACTACATGGAGAAGCTGGCCCAGCA
GAGAAACAACTCGCTGCACATTCTAGAAGAGAGCTTCACGGAAGACACCT
ACCAGCTGGCCAGCATAGTTAATCACATCGTTCGCCACGCCCTGGCCTTT
GCCAATGTGGCCATTCATTCGGACAAGAAGGCTTTGACGGCTTTGTGCGA
GACCTTGCTCGCCGAATGTGCCACTTTCCACGAGGAGGCGGGCGAGCCCA
ACAGTGGTCATCGGAAGCTGGAGGCCCTCTCCCTGGAACGTGCCCTCTAT
GCCCTGGAATCCTTTCTCAATGAGGCGCTGCTGCACTTGCTGTTCGTCAG
TCTGATAGATCTGGAAAACGCTTCGGTGGAGAAGCTAAAGGATGCACTGC
AAAGGGATCCTGCGGGAGCTCAGGAGCTAATCTCCGCATTCGACACGAAC
ATGGATCGCATTCAGCAGATTGGGGTTCTGGCCATAGCCTTCTCGCAGGA
CATCAAAACGAAGACGATTGTCAGGAGCTGCCTGGCCTCACTGGAATCCC
TGGATGCGTGCATTGTGCCCGCTCTCCAGCTGCCAGAGTCCACTTCATCC
GCACACCACGCGGAGGTCTTGCAGGAGCATTTTAACCAGGAGCTGCTGAT
CTTTAGGAACGTCATCCACGAAATCATCGATAGCTGCTCCCTGATCAACA
ACTACCTGGACATGCTGGGCGAGAGGATCCACGTACAGGACAAAAGCCAT
CTGAAGCTGATTGTCCAGAGGGGCGGAGTGGTGGTGGATCACTTTCGGCT
GCCCGTCAATTACTCGGGACTCAGTGAAGATGGCAAGCGGGTGCACAAGG
ACCTCATTCTGATCCTGCGCGAGTGCCAGGCCGTGGTCAACCTGGACGTC
CCAGTGGATCCCAAGCGCATCGTGAAGCGCCTTAAGATACTGTACTCCGT
GCTGGCCAAGCTGAGGGACTTGATATGCAGGGATAATCTGGAGCCCGATT
CCTCAGTTGCTTCCGAAGCTCAAGTGCCCTCAAGTGCAACCCGAACTTTT
GTGCGGAGCAGTCGATCCTTTGGCAAACGGCATCGATCCTTTGTAAAACA
AACCGGAAATTGCTCAGTTTTCGGGCCACAGGACTCACTTGCTGAATCCG
GACACAGCGAAAGCGATCTTATTAGTTTCCAAATCACTGAGATTCTTAGG
TTAGATGCAAGCTTTCTAGACCAT
BO12730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-alpha-RB | 1593 | CG17957-PB | 1..1590 | 17..1606 | 7950 | 100 | Plus |
| Sry-alpha-RA | 1593 | CG17957-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-beta-RB | 3300 | CG7938-RB | 1490..3080 | 16..1606 | 7955 | 100 | Plus |
| Sry-alpha-RB | 3353 | CG17957-RB | 1543..3133 | 16..1606 | 7955 | 100 | Plus |
| Sry-alpha-RA | 1855 | CG17957-RA | 45..1635 | 16..1606 | 7955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30041261..30042851 | 16..1606 | 7955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:08:57 has no hits.
BO12730.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:00 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 1..1593 | 17..1609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:43 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 44..1637 | 9..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:45 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 46..1635 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:00 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 44..1637 | 9..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:04 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-alpha-RA | 46..1635 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:04 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30041262..30042851 | 17..1608 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:45 Download gff for
BO12730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25866984..25868573 | 17..1608 | 99 | | Plus |
BO12730.pep Sequence
Translation from 16 to 1624
> BO12730.pep
MEQLLAQLHTCSELIAEGYSSTGNIGWLNEFCATFLDFASDLKARLPEVA
PSGANLDVETIFLCLTQVVTCITHLERTISMEAPHMTRQHFLDRLDWCLR
RLLVSLTQLEGNVTPVKNLEDHSFVELMDLALDHLDDYMEKLAQQRNNSL
HILEESFTEDTYQLASIVNHIVRHALAFANVAIHSDKKALTALCETLLAE
CATFHEEAGEPNSGHRKLEALSLERALYALESFLNEALLHLLFVSLIDLE
NASVEKLKDALQRDPAGAQELISAFDTNMDRIQQIGVLAIAFSQDIKTKT
IVRSCLASLESLDACIVPALQLPESTSSAHHAEVLQEHFNQELLIFRNVI
HEIIDSCSLINNYLDMLGERIHVQDKSHLKLIVQRGGVVVDHFRLPVNYS
GLSEDGKRVHKDLILILRECQAVVNLDVPVDPKRIVKRLKILYSVLAKLR
DLICRDNLEPDSSVASEAQVPSSATRTFVRSSRSFGKRHRSFVKQTGNCS
VFGPQDSLAESGHSESDLISFQITEILRLDASFLDH
BO12730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-alpha-PB | 530 | CG17957-PB | 1..530 | 1..530 | 2684 | 100 | Plus |
| Sry-alpha-PA | 530 | CG17957-PA | 1..530 | 1..530 | 2684 | 100 | Plus |
| Spt-PB | 591 | CG8247-PB | 1..457 | 1..449 | 715 | 36.6 | Plus |
