Clone BO12731 Report

Search the DGRC for BO12731

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG31446-RA
Protein status:BO12731.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO12731.3prime Sequence

728 bp (727 high quality bases) assembled on 2006-05-09

> BO12731.3prime
ATGGTCTAGAAAGCTTGCATTTATTTGATGGTCAGCAAAAATGCCAAGAA
TAATAGCCATGGCAATCAACATTGTGGAAATAATGGTCGAAGGATTGGAT
CCGGATGGTGCATAGCAAGATTCGCCCTGAGTTATCGCTGACATGGTGCC
ATTTAAAAAGTTTGAAGATATACTAGAGCCAAGACCCTCGAGTTTATTCA
AAATTTGTGTGGTGGGGGTACGATCCCTAGCAAGGATAATTCCAAAGGAT
GTGCCGTTATCCGTCTTGTTGGTATAGCCACAAAGGAAGGCCACATCGGT
GTAGTCAGTGTAAAGGACCTTGTACACTGTATAGGTGGTATAACCAGGTG
GGTTCCAGTAGGTGAAGTTGTAGCCATCCGCGGCCGCCGTGTTATTCTCC
ACAGTGATGGTTGCGTTCATGGTTTGATTCACCCACGGGTAATCGGGAGA
TACGGCATATGTGGTATCGATCAGCACATTATCCTCGGTTTTATTCAGCA
CCGTAATATTCACCTCAGTGCAAAAATCAATGCCGGACGGCTGACGAGCC
ACTTCCCACCAAATTCCAGAGAACAGATCAAGATCGACCGCAATGCTATC
GGTCAAGTTACATAGGGCCACATAATCATTACTCTGGGCTAGGATCGGTG
TACTTCCTTGTAGAAAAACCAAAATGCAAAGGAGACCCAAAGCATAAGTG
CTATTTGATACCATGTCGACTGATAACT

BO12731.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 699 CG31446-RA 1..696 714..19 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 869 CG31446-RA 45..740 714..19 3480 100 Minus
CG31446-RB 884 CG31446-RB 45..755 714..19 3320 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15693328..15693783 574..119 2280 100 Minus
3R 32079331 3R 15693130..15693270 714..574 705 100 Minus
3R 32079331 3R 15693966..15694065 118..19 500 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:46:07 has no hits.

BO12731.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:05 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:51 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-PA 1..699 18..714 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:35 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 40..746 11..723 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:32 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 40..746 11..723 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:32 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15693966..15694071 11..118 96   Minus
3R 15693125..15693270 574..723 97 -> Minus
3R 15693329..15693783 119..573 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:35 Download gff for BO12731.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11518847..11518992 574..723 97 -> Minus
arm_3R 11519051..11519505 119..573 100 -> Minus
arm_3R 11519688..11519793 11..118 96   Minus

BO12731.5prime Sequence

728 bp (727 high quality bases) assembled on 2006-05-08

> BO12731.5prime
GAAGTTATCAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCC
TTTGCATTTTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGT
AATGATTATGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCT
TGATCTGTTCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCA
TTGATTTTTGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGAT
AATGTGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGT
GAATCAAACCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCG
CGGATGGCTACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTAT
ACAGTGTACAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTG
TGGCTATACCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTG
CTAGGGATCGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTT
GGCTCTAGTATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAAC
TCAGGGCGAATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTA
TTTCCACAATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGAC
CATCAAATAAATGCAAGCTTTCTAGACC

BO12731.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 699 CG31446-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 869 CG31446-RA 45..740 17..712 3480 100 Plus
CG31446-RB 884 CG31446-RB 45..755 17..712 3320 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15693328..15693783 157..612 2280 100 Plus
3R 32079331 3R 15693130..15693270 17..157 705 100 Plus
3R 32079331 3R 15693966..15694065 613..712 500 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:46:17 has no hits.

BO12731.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:06 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:53 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-PA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:47 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 40..746 8..720 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:10 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 40..746 8..720 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:10 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15693125..15693270 8..157 97 -> Plus
3R 15693329..15693783 158..612 100 -> Plus
3R 15693966..15694071 613..720 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:47 Download gff for BO12731.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11518847..11518992 8..157 97 -> Plus
arm_3R 11519051..11519505 158..612 100 -> Plus
arm_3R 11519688..11519793 613..720 96   Plus

BO12731.complete Sequence

730 bp assembled on 2006-10-11

GenBank Submission: FJ632539

> BO12731.complete
GAAGTTATCAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCC
TTTGCATTTTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGT
AATGATTATGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCT
TGATCTGTTCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCA
TTGATTTTTGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGAT
AATGTGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGT
GAATCAAACCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCG
CGGATGGCTACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTAT
ACAGTGTACAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTG
TGGCTATACCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTG
CTAGGGATCGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTT
GGCTCTAGTATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAAC
TCAGGGCGAATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTA
TTTCCACAATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGAC
CATCAAATAAATGCAAGCTTTCTAGACCAT

BO12731.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 699 CG31446-PA 1..696 17..712 3480 100 Plus
CG31446-RB 714 CG31446-PB 1..711 17..712 3295 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-RA 869 CG31446-RA 45..740 17..712 3480 100 Plus
CG31446-RB 884 CG31446-RB 45..755 17..712 3295 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15693328..15693783 157..612 2280 100 Plus
3R 32079331 3R 15693130..15693270 17..157 705 100 Plus
3R 32079331 3R 15693966..15694065 613..712 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:38:45 has no hits.

BO12731.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:01 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:46 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 37..743 8..720 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:22 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 45..740 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:01 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 37..743 8..720 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:19 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
CG31446-RA 45..740 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:19 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15693130..15693270 17..157 100 -> Plus
3R 15693329..15693783 158..612 100 -> Plus
3R 15693966..15694065 613..714 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:22 Download gff for BO12731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11518852..11518992 17..157 100 -> Plus
arm_3R 11519051..11519505 158..612 100 -> Plus
arm_3R 11519688..11519787 613..714 98   Plus

BO12731.pep Sequence

Translation from 16 to 730

> BO12731.pep
MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG
IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN
ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK
TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC
YAPSGSNPSTIISTMLIAMAIILGIFADHQINASFLDH

BO12731.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31446-PA 232 CG31446-PA 1..232 1..232 1216 100 Plus
CG31446-PB 237 CG31446-PB 1..237 1..232 1200 97.9 Plus
CG5399-PB 218 CG5399-PB 5..215 8..223 161 30.9 Plus
CG5399-PA 218 CG5399-PA 5..215 8..223 161 30.9 Plus