Clone Sequence Records
BO12731.3prime Sequence
728 bp (727 high quality bases) assembled on 2006-05-09
> BO12731.3prime
ATGGTCTAGAAAGCTTGCATTTATTTGATGGTCAGCAAAAATGCCAAGAA
TAATAGCCATGGCAATCAACATTGTGGAAATAATGGTCGAAGGATTGGAT
CCGGATGGTGCATAGCAAGATTCGCCCTGAGTTATCGCTGACATGGTGCC
ATTTAAAAAGTTTGAAGATATACTAGAGCCAAGACCCTCGAGTTTATTCA
AAATTTGTGTGGTGGGGGTACGATCCCTAGCAAGGATAATTCCAAAGGAT
GTGCCGTTATCCGTCTTGTTGGTATAGCCACAAAGGAAGGCCACATCGGT
GTAGTCAGTGTAAAGGACCTTGTACACTGTATAGGTGGTATAACCAGGTG
GGTTCCAGTAGGTGAAGTTGTAGCCATCCGCGGCCGCCGTGTTATTCTCC
ACAGTGATGGTTGCGTTCATGGTTTGATTCACCCACGGGTAATCGGGAGA
TACGGCATATGTGGTATCGATCAGCACATTATCCTCGGTTTTATTCAGCA
CCGTAATATTCACCTCAGTGCAAAAATCAATGCCGGACGGCTGACGAGCC
ACTTCCCACCAAATTCCAGAGAACAGATCAAGATCGACCGCAATGCTATC
GGTCAAGTTACATAGGGCCACATAATCATTACTCTGGGCTAGGATCGGTG
TACTTCCTTGTAGAAAAACCAAAATGCAAAGGAGACCCAAAGCATAAGTG
CTATTTGATACCATGTCGACTGATAACT
BO12731.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-PA | 699 | CG31446-RA | 1..696 | 714..19 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-RA | 869 | CG31446-RA | 45..740 | 714..19 | 3480 | 100 | Minus |
CG31446-RB | 884 | CG31446-RB | 45..755 | 714..19 | 3320 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15693328..15693783 | 574..119 | 2280 | 100 | Minus |
3R | 32079331 | 3R | 15693130..15693270 | 714..574 | 705 | 100 | Minus |
3R | 32079331 | 3R | 15693966..15694065 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:46:07 has no hits.
BO12731.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:05 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:51 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-PA | 1..699 | 18..714 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:35 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 40..746 | 11..723 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:32 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 40..746 | 11..723 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:32 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15693966..15694071 | 11..118 | 96 | | Minus |
3R | 15693125..15693270 | 574..723 | 97 | -> | Minus |
3R | 15693329..15693783 | 119..573 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:35 Download gff for
BO12731.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11518847..11518992 | 574..723 | 97 | -> | Minus |
arm_3R | 11519051..11519505 | 119..573 | 100 | -> | Minus |
arm_3R | 11519688..11519793 | 11..118 | 96 | | Minus |
BO12731.5prime Sequence
728 bp (727 high quality bases) assembled on 2006-05-08
> BO12731.5prime
GAAGTTATCAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCC
TTTGCATTTTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGT
AATGATTATGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCT
TGATCTGTTCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCA
TTGATTTTTGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGAT
AATGTGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGT
GAATCAAACCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCG
CGGATGGCTACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTAT
ACAGTGTACAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTG
TGGCTATACCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTG
CTAGGGATCGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTT
GGCTCTAGTATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAAC
TCAGGGCGAATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTA
TTTCCACAATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGAC
CATCAAATAAATGCAAGCTTTCTAGACC
BO12731.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-PA | 699 | CG31446-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-RA | 869 | CG31446-RA | 45..740 | 17..712 | 3480 | 100 | Plus |
CG31446-RB | 884 | CG31446-RB | 45..755 | 17..712 | 3320 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15693328..15693783 | 157..612 | 2280 | 100 | Plus |
3R | 32079331 | 3R | 15693130..15693270 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 15693966..15694065 | 613..712 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:46:17 has no hits.
BO12731.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:06 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:53 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-PA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:47 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 40..746 | 8..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:10 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 40..746 | 8..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:10 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15693125..15693270 | 8..157 | 97 | -> | Plus |
3R | 15693329..15693783 | 158..612 | 100 | -> | Plus |
3R | 15693966..15694071 | 613..720 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:47 Download gff for
BO12731.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11518847..11518992 | 8..157 | 97 | -> | Plus |
arm_3R | 11519051..11519505 | 158..612 | 100 | -> | Plus |
arm_3R | 11519688..11519793 | 613..720 | 96 | | Plus |
BO12731.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ632539
> BO12731.complete
GAAGTTATCAGTCGACATGGTATCAAATAGCACTTATGCTTTGGGTCTCC
TTTGCATTTTGGTTTTTCTACAAGGAAGTACACCGATCCTAGCCCAGAGT
AATGATTATGTGGCCCTATGTAACTTGACCGATAGCATTGCGGTCGATCT
TGATCTGTTCTCTGGAATTTGGTGGGAAGTGGCTCGTCAGCCGTCCGGCA
TTGATTTTTGCACTGAGGTGAATATTACGGTGCTGAATAAAACCGAGGAT
AATGTGCTGATCGATACCACATATGCCGTATCTCCCGATTACCCGTGGGT
GAATCAAACCATGAACGCAACCATCACTGTGGAGAATAACACGGCGGCCG
CGGATGGCTACAACTTCACCTACTGGAACCCACCTGGTTATACCACCTAT
ACAGTGTACAAGGTCCTTTACACTGACTACACCGATGTGGCCTTCCTTTG
TGGCTATACCAACAAGACGGATAACGGCACATCCTTTGGAATTATCCTTG
CTAGGGATCGTACCCCCACCACACAAATTTTGAATAAACTCGAGGGTCTT
GGCTCTAGTATATCTTCAAACTTTTTAAATGGCACCATGTCAGCGATAAC
TCAGGGCGAATCTTGCTATGCACCATCCGGATCCAATCCTTCGACCATTA
TTTCCACAATGTTGATTGCCATGGCTATTATTCTTGGCATTTTTGCTGAC
CATCAAATAAATGCAAGCTTTCTAGACCAT
BO12731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-RA | 699 | CG31446-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
CG31446-RB | 714 | CG31446-PB | 1..711 | 17..712 | 3295 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-RA | 869 | CG31446-RA | 45..740 | 17..712 | 3480 | 100 | Plus |
CG31446-RB | 884 | CG31446-RB | 45..755 | 17..712 | 3295 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15693328..15693783 | 157..612 | 2280 | 100 | Plus |
3R | 32079331 | 3R | 15693130..15693270 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 15693966..15694065 | 613..712 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:45 has no hits.
BO12731.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:01 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:46 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 37..743 | 8..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:22 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 45..740 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:01 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 37..743 | 8..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:19 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31446-RA | 45..740 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:19 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15693130..15693270 | 17..157 | 100 | -> | Plus |
3R | 15693329..15693783 | 158..612 | 100 | -> | Plus |
3R | 15693966..15694065 | 613..714 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:22 Download gff for
BO12731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11518852..11518992 | 17..157 | 100 | -> | Plus |
arm_3R | 11519051..11519505 | 158..612 | 100 | -> | Plus |
arm_3R | 11519688..11519787 | 613..714 | 98 | | Plus |
BO12731.pep Sequence
Translation from 16 to 730
> BO12731.pep
MVSNSTYALGLLCILVFLQGSTPILAQSNDYVALCNLTDSIAVDLDLFSG
IWWEVARQPSGIDFCTEVNITVLNKTEDNVLIDTTYAVSPDYPWVNQTMN
ATITVENNTAAADGYNFTYWNPPGYTTYTVYKVLYTDYTDVAFLCGYTNK
TDNGTSFGIILARDRTPTTQILNKLEGLGSSISSNFLNGTMSAITQGESC
YAPSGSNPSTIISTMLIAMAIILGIFADHQINASFLDH
BO12731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31446-PA | 232 | CG31446-PA | 1..232 | 1..232 | 1216 | 100 | Plus |
CG31446-PB | 237 | CG31446-PB | 1..237 | 1..232 | 1200 | 97.9 | Plus |
CG5399-PB | 218 | CG5399-PB | 5..215 | 8..223 | 161 | 30.9 | Plus |
CG5399-PA | 218 | CG5399-PA | 5..215 | 8..223 | 161 | 30.9 | Plus |