Clone Sequence Records
BO12734.3prime Sequence
933 bp (754 high quality bases) assembled on 2006-05-08
> BO12734.3prime
ATGGTCTAGAAAGCTTGCGGCCTTCTGGGTGGCGGTGCTGCGTTGTTGGT
GCTGGCGCATCATCTCCAGCTGCTTGACACGGGTGTAGGCGGCGCTGGCC
ACCAGGACCACCACATTGGAGGTCCACCAGAGAGCCGATCGAACGTCATG
GTAGTACTGAGTGGCGATCACCGTTTGAGCGCAGGCCTTGGCCGTTCCCG
AGATATTATGCGTCAGGGCGGATGTGACCTTGATTTCCAGCGCAGTGACA
AATCCAATGGCAAAGCCACAAAGGCCACTAAGCGTCATCGCGGCCCAGAA
CCAAGAAGCCCACAGGTGCGGATACGTGATAATGCTCTCCAGCTCGCCAT
TGATGATGATCAGGGGCAGGAAGAGCAACGTGGAGTAGAGATTATTGTAG
TAGCTAAGCAGCCATACCTCCTGGTTGACATAACCCAATGATTTCTTCGT
CTGAATAGAAAACATGGCCAAAGCAAGCGAACTAAGCACTCCAAAGATGG
TTCCCCGCCAGGAGAAGACCTCCGTCAGGCTTTCTTGGTCCACACCCAGC
CAGAATCCAACGACAATAGCGCCACAACACAGCAGGCACTTGAAGCTGGT
TCGTTGGCGTAGAATCACGTAAGTGAGGACCACACTAAACACGGTTGTTA
GGGAGCGACCGATGTAGTAGAAGGCCACTGTGACGTAGGACAGCGACAGG
TTGTTGGCCCCAATCATCAGGGTATAGAGCACAGATAGAGGCAGGATCTT
GCGGAAGGTGTCGATGTCCAGTGGATTTCCCTCGGGAAACGTAAATACCG
AGGGGTACTTCCTGCTCAGCCGACTTGCCACAAAACATATCACTGTNGGA
AACCACGCATTGGAACCAGGACATAAAGAGCGGAGCTCCCAGGGTTACTG
TATCGCTGCTCAGCAGGTGCTTATTTACGAATA
BO12734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9620-PA | 1014 | Gfr-RA | 184..1011 | 846..19 | 4140 | 100 | Minus |
| CG9620-PA | 1014 | Gfr-RA | 98..183 | 933..848 | 405 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 196..1109 | 933..19 | 4535 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303063..8303768 | 227..933 | 3470 | 99.7 | Plus |
| 3R | 32079331 | 3R | 8302802..8303013 | 19..230 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:42:08 has no hits.
BO12734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:12 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-PA | 99..1014 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:00 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9620-PA | 99..1014 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:00 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 197..1113 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:35 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 197..1113 | 15..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:35 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302798..8303011 | 15..228 | 99 | <- | Plus |
| 3R | 8303065..8303767 | 229..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:00 Download gff for
BO12734.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128520..4128733 | 15..228 | 99 | <- | Plus |
| arm_3R | 4128787..4129489 | 229..932 | 99 | | Plus |
BO12734.5prime Sequence
926 bp (812 high quality bases) assembled on 2006-05-08
> BO12734.5prime
GAAGTTATCAGTCGACATGTACAAGAATCTGGAGGAGCACAACCGGCTGG
TTAACAAATACCTAAAGATATTCTTCGTCGTGTCGCTCTACTGGTGCACC
TCGATATTGACGGTATTCGTAAATAAGCACCTGCTGAGCAGCGATACAGT
AAACCTGGGAGCTCCGCTCTTTATGTCCTGGTTCCAATGCGTGGTTTCCA
CAGTGATATGTTTTGTGGCAAGTCGGCTGAGCAGGAAGTACCCCTCGGTA
TTTACGTTTCCCGAGGGAAATCCACTGGACATCGACACCTTCCGCAAGAT
CCTGCCTCTATCTGTGCTCTATACCCTGATGATTGGGGCCAACAACCTGT
CGCTGTCCTACGTCACAGTGGCCTTCTACTACATCGGTCGCTCCCTAACA
ACCGTGTTTAGTGTGGTCCTCACTTACGTGATTCTACGCCAACGAACCAG
CTTCAAGTGCCTGCTGTGTTGTGGCGCTATTGTCGTTGGATTCTGGCTGG
GTGTGGACCAAGAAAGCCTGACGGAGGTCTTCTCCTGGCGGGGAACCATC
TTTGGAGTGCTTAGTTCGCTTGCTTTGGCCATGTTTTCTATTCAGACGAA
GAAATCATTGGGTTATGTCAACCAGGAGGTATGGCTGCTTAGCTACTACA
ATAATCTCTACTCCACGTTGCTCTTCCTGCCCCTGATCATCATCAATGGC
GAGCTGGAGAGCATTATCACGTATCCGCACCTGTGGGCTTCTTGGTTCTG
GGCCGCGATGACGCTTAGTGGCCTTTGTGGCTTTGCCATTGGATTTGTCA
CTGCGCTGGAAATCAAAGTCACATCCGCCCTGACGCATAATATCTCGGGA
ACGGNCAAGGCCTGCGCTCAAACGGTGATCGCCACTCAGTACTACCATGA
CGTTCGATCGGCTCTCTGGTGGACCT
BO12734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9620-PA | 1014 | Gfr-RA | 1..910 | 17..926 | 4506 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 95..1008 | 13..926 | 4529 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303066..8303789 | 816..93 | 3620 | 100 | Minus |
| 3R | 32079331 | 3R | 8302903..8303011 | 926..818 | 534 | 99.1 | Minus |
| 3R | 32079331 | 3R | 8303846..8303929 | 96..13 | 405 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:09:55 has no hits.
BO12734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:13 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:01 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9620-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:02 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 95..1008 | 13..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:13 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 95..1008 | 13..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:13 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302903..8303011 | 818..926 | 99 | <- | Minus |
| 3R | 8303065..8303788 | 94..817 | 99 | <- | Minus |
| 3R | 8303849..8303929 | 13..93 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:02 Download gff for
BO12734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128625..4128733 | 818..926 | 99 | <- | Minus |
| arm_3R | 4128787..4129510 | 94..817 | 99 | <- | Minus |
| arm_3R | 4129571..4129651 | 13..93 | 98 | | Minus |
BO12734.complete Sequence
1045 bp assembled on 2006-10-11
GenBank Submission: FJ632540
> BO12734.complete
GAAGTTATCAGTCGACATGTACAAGAATCTGGAGGAGCACAACCGGCTGG
TTAACAAATACCTAAAGATATTCTTCGTCGTGTCGCTCTACTGGTGCACC
TCGATATTGACGGTATTCGTAAATAAGCACCTGCTGAGCAGCGATACAGT
AAACCTGGGAGCTCCGCTCTTTATGTCCTGGTTCCAATGCGTGGTTTCCA
CAGTGATATGTTTTGTGGCAAGTCGGCTGAGCAGGAAGTACCCCTCGGTA
TTTACGTTTCCCGAGGGAAATCCACTGGACATCGACACCTTCCGCAAGAT
CCTGCCTCTATCTGTGCTCTATACCCTGATGATTGGGGCCAACAACCTGT
CGCTGTCCTACGTCACAGTGGCCTTCTACTACATCGGTCGCTCCCTAACA
ACCGTGTTTAGTGTGGTCCTCACTTACGTGATTCTACGCCAACGAACCAG
CTTCAAGTGCCTGCTGTGTTGTGGCGCTATTGTCGTTGGATTCTGGCTGG
GTGTGGACCAAGAAAGCCTGACGGAGGTCTTCTCCTGGCGGGGAACCATC
TTTGGAGTGCTTAGTTCGCTTGCTTTGGCCATGTTTTCTATTCAGACGAA
GAAATCATTGGGTTATGTCAACCAGGAGGTATGGCTGCTTAGCTACTACA
ATAATCTCTACTCCACGTTGCTCTTCCTGCCCCTGATCATCATCAATGGC
GAGCTGGAGAGCATTATCACGTATCCGCACCTGTGGGCTTCTTGGTTCTG
GGCCGCGATGACGCTTAGTGGCCTTTGTGGCTTTGCCATTGGATTTGTCA
CTGCGCTGGAAATCAAGGTCACATCCGCCCTGACGCATAATATCTCGGGA
ACGGCCAAGGCCTGCGCTCAAACGGTGATCGCCACTCAGTACTACCATGA
CGTTCGATCGGCTCTCTGGTGGACCTCCAATGTGGTGGTCCTGGTGGCCA
GCGCCGCCTACACCCGTGTCAAGCAGCTGGAGATGATGCGCCAGCACCAA
CAACGCAGCACCGCCACCCAGAAGGCCGCAAGCTTTCTAGACCAT
BO12734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1014 | CG9620-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 95..1109 | 13..1027 | 5060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303063..8303789 | 819..93 | 3635 | 100 | Minus |
| 3R | 32079331 | 3R | 8302802..8303013 | 1027..816 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 8303846..8303929 | 96..13 | 405 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:12 has no hits.
BO12734.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:39 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 1..1014 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:19 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 83..1101 | 13..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:47 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 99..1109 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:40 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 83..1101 | 13..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:09 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 99..1109 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:09 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302799..8303011 | 818..1029 | 99 | <- | Minus |
| 3R | 8303065..8303788 | 94..817 | 100 | <- | Minus |
| 3R | 8303849..8303925 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:47 Download gff for
BO12734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128521..4128733 | 818..1029 | 99 | <- | Minus |
| arm_3R | 4128787..4129510 | 94..817 | 100 | <- | Minus |
| arm_3R | 4129571..4129647 | 17..93 | 100 | | Minus |
BO12734.pep Sequence
Translation from 16 to 1045
> BO12734.pep
MYKNLEEHNRLVNKYLKIFFVVSLYWCTSILTVFVNKHLLSSDTVNLGAP
LFMSWFQCVVSTVICFVASRLSRKYPSVFTFPEGNPLDIDTFRKILPLSV
LYTLMIGANNLSLSYVTVAFYYIGRSLTTVFSVVLTYVILRQRTSFKCLL
CCGAIVVGFWLGVDQESLTEVFSWRGTIFGVLSSLALAMFSIQTKKSLGY
VNQEVWLLSYYNNLYSTLLFLPLIIINGELESIITYPHLWASWFWAAMTL
SGLCGFAIGFVTALEIKVTSALTHNISGTAKACAQTVIATQYYHDVRSAL
WWTSNVVVLVASAAYTRVKQLEMMRQHQQRSTATQKAASFLDH
BO12734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-PA | 337 | CG9620-PA | 1..337 | 1..337 | 1744 | 100 | Plus |
| frc-PB | 373 | CG3874-PB | 70..320 | 25..288 | 172 | 26.3 | Plus |
| frc-PA | 373 | CG3874-PA | 70..320 | 25..288 | 172 | 26.3 | Plus |
