Clone BO12735 Report

Search the DGRC for BO12735

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG8116-RA
Protein status:BO12735.pep: validated full length
Sequenced Size:442

Clone Sequence Records

BO12735.5prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-08

> BO12735.5prime
GAAGTTATCAGTCGACATGAACGCCAGCCTCATCTATGAGATACTTATGT
ATCTGAACTCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTG
GGCGTTCTTAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCG
GGAGGCCAGCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTG
TCTTCGGGCGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCA
TCCGTAATATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTG
TTTTCAAACCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGA
TCACCCTACAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACA
ATGTGTCGCCCCGTCACATACACCGCAAGCTTTCTAGACC

BO12735.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-PA 411 CG8116-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RC 1826 CG8116-RC 550..958 16..424 2045 100 Plus
CG8116-RB 2812 CG8116-RB 555..963 16..424 2045 100 Plus
CG8116-RA 1831 CG8116-RA 555..963 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8717124..8717342 16..234 1095 100 Plus
3R 32079331 3R 8717848..8718039 233..424 960 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:20:59 has no hits.

BO12735.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:15 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-PA 1..411 17..425 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:04 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-PA 1..411 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:23 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 555..967 16..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:06 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 555..967 16..430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:06 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8717124..8717341 16..233 100 -> Plus
3R 8717849..8718043 234..430 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:23 Download gff for BO12735.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4542846..4543063 16..233 100 -> Plus
arm_3R 4543571..4543765 234..430 98   Plus

BO12735.3prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-08

> BO12735.3prime
ATGGTCTAGAAAGCTTGCGGTGTATGTGACGGGGCGACACATTGTACAAA
TGAATATGCTGGCGTAGACTAGTTCAGCACCTTGTAGGGTGATCATTAAG
GCACTCAGAATAATTTCGAGTTTGAGAACAAAGGTTTGAAAACAACACAA
GTAGATAACAATAGCAAGACTGGGCAGTGTTAATATTACGGATGCGGTTG
CTTGCCAGCCACGATCGCTTAGACTGCTCTTCCGCCCGAAGACAATGCGC
ACGGTCTCGATGATGCACAGTGAGAGCAGGATGCTGGCCTCCCGGGACAA
CGCGTTCTCGCCGTAGTTTAGATTAATCGCCTTAAGAACGCCCACGCCCA
CTTCGAAGGCGGCGTACATGCCAAAGTAGAACGAGTTCAGATACATAAGT
ATCTCATAGATGAGGCTGGCGTTCATGTCGACTGATAACT

BO12735.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-PA 411 CG8116-RA 1..408 426..19 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RC 1826 CG8116-RC 550..958 427..19 2045 100 Minus
CG8116-RB 2812 CG8116-RB 555..963 427..19 2045 100 Minus
CG8116-RA 1831 CG8116-RA 555..963 427..19 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8717124..8717342 427..209 1095 100 Minus
3R 32079331 3R 8717848..8718039 210..19 960 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:50:23 has no hits.

BO12735.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:14 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-PA 1..411 18..426 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:03 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-PA 1..411 18..426 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:03 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 555..967 13..427 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:04 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 555..967 13..427 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:04 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8717124..8717341 210..427 100 -> Minus
3R 8717849..8718043 13..209 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:03 Download gff for BO12735.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4542846..4543063 210..427 100 -> Minus
arm_3R 4543571..4543765 13..209 98   Minus

BO12735.complete Sequence

442 bp assembled on 2006-10-11

GenBank Submission: FJ632541

> BO12735.complete
GAAGTTATCAGTCGACATGAACGCCAGCCTCATCTATGAGATACTTATGT
ATCTGAACTCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTG
GGCGTTCTTAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCG
GGAGGCCAGCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTG
TCTTCGGGCGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCA
TCCGTAATATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTG
TTTTCAAACCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGA
TCACCCTACAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACA
ATGTGTCGCCCCGTCACATACACCGCAAGCTTTCTAGACCAT

BO12735.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RC 411 CG8116-PC 1..408 17..424 2040 100 Plus
CG8116-RB 411 CG8116-PB 1..408 17..424 2040 100 Plus
CG8116-RA 411 CG8116-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RC 1826 CG8116-RC 550..958 16..424 2045 100 Plus
CG8116-RB 2812 CG8116-RB 555..963 16..424 2045 100 Plus
CG8116-RA 1831 CG8116-RA 555..963 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8717124..8717342 16..234 1095 100 Plus
3R 32079331 3R 8717848..8718039 233..424 960 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:21 has no hits.

BO12735.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:40 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 1..411 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:42 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 564..976 16..430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:29 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 556..963 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:41 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 564..976 16..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:31 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RA 556..963 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:31 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8717849..8718039 234..426 98   Plus
3R 8717125..8717341 17..233 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:29 Download gff for BO12735.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4543571..4543761 234..426 98   Plus
arm_3R 4542847..4543063 17..233 100 -> Plus

BO12735.pep Sequence

Translation from 16 to 442

> BO12735.pep
MNASLIYEILMYLNSFYFGMYAAFEVGVGVLKAINLNYGENALSREASIL
LSLCIIETVRIVFGRKSSLSDRGWQATASVILTLPSLAIVIYLCCFQTFV
LKLEIILSALMITLQGAELVYASIFICTMCRPVTYTASFLDH

BO12735.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-PC 136 CG8116-PC 1..136 1..136 677 100 Plus
CG8116-PB 136 CG8116-PB 1..136 1..136 677 100 Plus
CG8116-PA 136 CG8116-PA 1..136 1..136 677 100 Plus
CG11760-PB 149 CG11760-PB 15..148 2..135 346 48.5 Plus