Clone Sequence Records
BO12735.5prime Sequence
440 bp (439 high quality bases) assembled on 2006-05-08
> BO12735.5prime
GAAGTTATCAGTCGACATGAACGCCAGCCTCATCTATGAGATACTTATGT
ATCTGAACTCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTG
GGCGTTCTTAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCG
GGAGGCCAGCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTG
TCTTCGGGCGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCA
TCCGTAATATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTG
TTTTCAAACCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGA
TCACCCTACAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACA
ATGTGTCGCCCCGTCACATACACCGCAAGCTTTCTAGACC
BO12735.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-PA | 411 | CG8116-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-RC | 1826 | CG8116-RC | 550..958 | 16..424 | 2045 | 100 | Plus |
CG8116-RB | 2812 | CG8116-RB | 555..963 | 16..424 | 2045 | 100 | Plus |
CG8116-RA | 1831 | CG8116-RA | 555..963 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8717124..8717342 | 16..234 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 8717848..8718039 | 233..424 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:20:59 has no hits.
BO12735.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:15 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-PA | 1..411 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:04 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-PA | 1..411 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:23 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 555..967 | 16..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:06 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 555..967 | 16..430 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:06 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8717124..8717341 | 16..233 | 100 | -> | Plus |
3R | 8717849..8718043 | 234..430 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:23 Download gff for
BO12735.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4542846..4543063 | 16..233 | 100 | -> | Plus |
arm_3R | 4543571..4543765 | 234..430 | 98 | | Plus |
BO12735.3prime Sequence
440 bp (439 high quality bases) assembled on 2006-05-08
> BO12735.3prime
ATGGTCTAGAAAGCTTGCGGTGTATGTGACGGGGCGACACATTGTACAAA
TGAATATGCTGGCGTAGACTAGTTCAGCACCTTGTAGGGTGATCATTAAG
GCACTCAGAATAATTTCGAGTTTGAGAACAAAGGTTTGAAAACAACACAA
GTAGATAACAATAGCAAGACTGGGCAGTGTTAATATTACGGATGCGGTTG
CTTGCCAGCCACGATCGCTTAGACTGCTCTTCCGCCCGAAGACAATGCGC
ACGGTCTCGATGATGCACAGTGAGAGCAGGATGCTGGCCTCCCGGGACAA
CGCGTTCTCGCCGTAGTTTAGATTAATCGCCTTAAGAACGCCCACGCCCA
CTTCGAAGGCGGCGTACATGCCAAAGTAGAACGAGTTCAGATACATAAGT
ATCTCATAGATGAGGCTGGCGTTCATGTCGACTGATAACT
BO12735.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-PA | 411 | CG8116-RA | 1..408 | 426..19 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-RC | 1826 | CG8116-RC | 550..958 | 427..19 | 2045 | 100 | Minus |
CG8116-RB | 2812 | CG8116-RB | 555..963 | 427..19 | 2045 | 100 | Minus |
CG8116-RA | 1831 | CG8116-RA | 555..963 | 427..19 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8717124..8717342 | 427..209 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 8717848..8718039 | 210..19 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:23 has no hits.
BO12735.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:14 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-PA | 1..411 | 18..426 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:03 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-PA | 1..411 | 18..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:03 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 555..967 | 13..427 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:04 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 555..967 | 13..427 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:04 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8717124..8717341 | 210..427 | 100 | -> | Minus |
3R | 8717849..8718043 | 13..209 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:03 Download gff for
BO12735.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4542846..4543063 | 210..427 | 100 | -> | Minus |
arm_3R | 4543571..4543765 | 13..209 | 98 | | Minus |
BO12735.complete Sequence
442 bp assembled on 2006-10-11
GenBank Submission: FJ632541
> BO12735.complete
GAAGTTATCAGTCGACATGAACGCCAGCCTCATCTATGAGATACTTATGT
ATCTGAACTCGTTCTACTTTGGCATGTACGCCGCCTTCGAAGTGGGCGTG
GGCGTTCTTAAGGCGATTAATCTAAACTACGGCGAGAACGCGTTGTCCCG
GGAGGCCAGCATCCTGCTCTCACTGTGCATCATCGAGACCGTGCGCATTG
TCTTCGGGCGGAAGAGCAGTCTAAGCGATCGTGGCTGGCAAGCAACCGCA
TCCGTAATATTAACACTGCCCAGTCTTGCTATTGTTATCTACTTGTGTTG
TTTTCAAACCTTTGTTCTCAAACTCGAAATTATTCTGAGTGCCTTAATGA
TCACCCTACAAGGTGCTGAACTAGTCTACGCCAGCATATTCATTTGTACA
ATGTGTCGCCCCGTCACATACACCGCAAGCTTTCTAGACCAT
BO12735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-RC | 411 | CG8116-PC | 1..408 | 17..424 | 2040 | 100 | Plus |
CG8116-RB | 411 | CG8116-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
CG8116-RA | 411 | CG8116-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-RC | 1826 | CG8116-RC | 550..958 | 16..424 | 2045 | 100 | Plus |
CG8116-RB | 2812 | CG8116-RB | 555..963 | 16..424 | 2045 | 100 | Plus |
CG8116-RA | 1831 | CG8116-RA | 555..963 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8717124..8717342 | 16..234 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 8717848..8718039 | 233..424 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:21 has no hits.
BO12735.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:40 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 1..411 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:42 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 564..976 | 16..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:29 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 556..963 | 17..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:41 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 564..976 | 16..430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:31 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8116-RA | 556..963 | 17..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:31 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8717849..8718039 | 234..426 | 98 | | Plus |
3R | 8717125..8717341 | 17..233 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:29 Download gff for
BO12735.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4543571..4543761 | 234..426 | 98 | | Plus |
arm_3R | 4542847..4543063 | 17..233 | 100 | -> | Plus |
BO12735.pep Sequence
Translation from 16 to 442
> BO12735.pep
MNASLIYEILMYLNSFYFGMYAAFEVGVGVLKAINLNYGENALSREASIL
LSLCIIETVRIVFGRKSSLSDRGWQATASVILTLPSLAIVIYLCCFQTFV
LKLEIILSALMITLQGAELVYASIFICTMCRPVTYTASFLDH
BO12735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8116-PC | 136 | CG8116-PC | 1..136 | 1..136 | 677 | 100 | Plus |
CG8116-PB | 136 | CG8116-PB | 1..136 | 1..136 | 677 | 100 | Plus |
CG8116-PA | 136 | CG8116-PA | 1..136 | 1..136 | 677 | 100 | Plus |
CG11760-PB | 149 | CG11760-PB | 15..148 | 2..135 | 346 | 48.5 | Plus |