Clone BO12736 Report

Search the DGRC for BO12736

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG4962-RA
Protein status:BO12736.pep: validated full length
Sequenced Size:403

Clone Sequence Records

BO12736.3prime Sequence

401 bp (400 high quality bases) assembled on 2006-05-08

> BO12736.3prime
ATGGTCTAGAAAGCTTGCGTGCAGGTAGGCTCCGTGTCCGTAGCCGGCGT
ATCCCAGACCGTAGCTACCGTAGCCGCCATAGGATCCATGGTAGGTGGAG
GTGGAGTGCAGAGCAGGCACGGCATGGACCAGAGGAGCGGCATGGACCAC
TGGAATGGCCTTGGTGGCCACCTTGTAGGTGTTGGCATAGGAGGTGGCCA
CCGGGTGGGCGACAATGGGAGCGGCGTAGCTCTTGATGATCGGGGCGTGC
GAGATCACAGCCGGAGCGGCATAAGCCGGAGCCAAGGCGGCGCCGTATCC
CAGTCCATATCCATGGCTGTAGGGCGAGATTACTCCGGCATTGGCCACGG
CGCACAGGGCAGAGATGAGGGCAATCAGTTTGAACATGTCGACTGATAAC
T

BO12736.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-PA 372 CG4962-RA 1..369 387..19 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-RA 774 CG4962-RA 65..433 387..19 1845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16295052..16295409 19..376 1790 100 Plus
Blast to na_te.dros performed 2015-02-03 07:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5581..5623 121..160 109 76.7 Plus

BO12736.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:16 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-PA 1..372 15..387 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:05 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-PA 1..372 15..387 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:44 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 58..437 14..395 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:58 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 58..437 14..395 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:58 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16295048..16295416 14..384 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:44 Download gff for BO12736.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16288148..16288516 14..384 98   Plus

BO12736.5prime Sequence

401 bp (400 high quality bases) assembled on 2006-05-08

> BO12736.5prime
GAAGTTATCAGTCGACATGTTCAAACTGATTGCCCTCATCTCTGCCCTGT
GCGCCGTGGCCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGA
CTGGGATACGGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGAT
CTCGCACGCCCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACC
CGGTGGCCACCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATT
CCAGTGGTCCATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTC
CACCTCCACCTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGG
GATACGCCGGCTACGGACACGGAGCCTACCTGCACGCAAGCTTTCTAGAC
C

BO12736.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-PA 372 CG4962-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-RA 774 CG4962-RA 65..433 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16295052..16295409 385..28 1790 100 Minus
Blast to na_te.dros performed 2015-02-13 08:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5581..5623 283..244 109 76.7 Minus

BO12736.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:17 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-PA 1..372 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:07 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-PA 1..372 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:04 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 58..437 9..390 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:42 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 58..437 9..390 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:42 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16295048..16295416 20..390 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:04 Download gff for BO12736.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16288148..16288516 20..390 98   Minus

BO12736.complete Sequence

403 bp assembled on 2006-10-11

GenBank Submission: FJ632542

> BO12736.complete
GAAGTTATCAGTCGACATGTTCAAACTGATTGCCCTCATCTCTGCCCTGT
GCGCCGTGGCCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGA
CTGGGATACGGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGAT
CTCGCACGCCCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACC
CGGTGGCCACCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATT
CCAGTGGTCCATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTC
CACCTCCACCTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGG
GATACGCCGGCTACGGACACGGAGCCTACCTGCACGCAAGCTTTCTAGAC
CAT

BO12736.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-RA 372 CG4962-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-RA 774 CG4962-RA 65..433 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16295052..16295409 385..28 1790 100 Minus
Blast to na_te.dros performed 2014-11-27 23:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5581..5623 283..244 109 76.7 Minus

BO12736.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:42 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 1..372 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:21 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 51..430 9..390 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:27 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 70..433 22..387 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:42 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 51..430 9..390 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:22 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
CG4962-RA 70..433 22..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:22 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16295050..16295411 22..387 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:27 Download gff for BO12736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16288150..16288511 22..387 98   Minus

BO12736.pep Sequence

Translation from 16 to 403

> BO12736.pep
MFKLIALISALCAVANAGVISPYSHGYGLGYGAALAPAYAAPAVISHAPI
IKSYAAPIVAHPVATSYANTYKVATKAIPVVHAAPLVHAVPALHSTSTYH
GSYGGYGSYGLGYAGYGHGAYLHASFLDH

BO12736.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4962-PA 123 CG4962-PA 1..123 1..123 646 100 Plus
CG13041-PA 124 CG13041-PA 1..106 1..102 153 34.9 Plus
CG13060-PA 131 CG13060-PA 1..99 1..95 144 36.4 Plus