Clone Sequence Records
BO12736.3prime Sequence
401 bp (400 high quality bases) assembled on 2006-05-08
> BO12736.3prime
ATGGTCTAGAAAGCTTGCGTGCAGGTAGGCTCCGTGTCCGTAGCCGGCGT
ATCCCAGACCGTAGCTACCGTAGCCGCCATAGGATCCATGGTAGGTGGAG
GTGGAGTGCAGAGCAGGCACGGCATGGACCAGAGGAGCGGCATGGACCAC
TGGAATGGCCTTGGTGGCCACCTTGTAGGTGTTGGCATAGGAGGTGGCCA
CCGGGTGGGCGACAATGGGAGCGGCGTAGCTCTTGATGATCGGGGCGTGC
GAGATCACAGCCGGAGCGGCATAAGCCGGAGCCAAGGCGGCGCCGTATCC
CAGTCCATATCCATGGCTGTAGGGCGAGATTACTCCGGCATTGGCCACGG
CGCACAGGGCAGAGATGAGGGCAATCAGTTTGAACATGTCGACTGATAAC
T
BO12736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-PA | 372 | CG4962-RA | 1..369 | 387..19 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 774 | CG4962-RA | 65..433 | 387..19 | 1845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16295052..16295409 | 19..376 | 1790 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 07:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 5581..5623 | 121..160 | 109 | 76.7 | Plus |
BO12736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:16 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-PA | 1..372 | 15..387 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:05 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-PA | 1..372 | 15..387 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:44 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 58..437 | 14..395 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:58 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 58..437 | 14..395 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:58 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16295048..16295416 | 14..384 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:44 Download gff for
BO12736.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16288148..16288516 | 14..384 | 98 | | Plus |
BO12736.5prime Sequence
401 bp (400 high quality bases) assembled on 2006-05-08
> BO12736.5prime
GAAGTTATCAGTCGACATGTTCAAACTGATTGCCCTCATCTCTGCCCTGT
GCGCCGTGGCCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGA
CTGGGATACGGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGAT
CTCGCACGCCCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACC
CGGTGGCCACCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATT
CCAGTGGTCCATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTC
CACCTCCACCTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGG
GATACGCCGGCTACGGACACGGAGCCTACCTGCACGCAAGCTTTCTAGAC
C
BO12736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-PA | 372 | CG4962-RA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 774 | CG4962-RA | 65..433 | 17..385 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16295052..16295409 | 385..28 | 1790 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 08:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 5581..5623 | 283..244 | 109 | 76.7 | Minus |
BO12736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:17 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-PA | 1..372 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:07 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-PA | 1..372 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:04 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 58..437 | 9..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:42 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 58..437 | 9..390 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:42 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16295048..16295416 | 20..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:04 Download gff for
BO12736.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16288148..16288516 | 20..390 | 98 | | Minus |
BO12736.complete Sequence
403 bp assembled on 2006-10-11
GenBank Submission: FJ632542
> BO12736.complete
GAAGTTATCAGTCGACATGTTCAAACTGATTGCCCTCATCTCTGCCCTGT
GCGCCGTGGCCAATGCCGGAGTAATCTCGCCCTACAGCCATGGATATGGA
CTGGGATACGGCGCCGCCTTGGCTCCGGCTTATGCCGCTCCGGCTGTGAT
CTCGCACGCCCCGATCATCAAGAGCTACGCCGCTCCCATTGTCGCCCACC
CGGTGGCCACCTCCTATGCCAACACCTACAAGGTGGCCACCAAGGCCATT
CCAGTGGTCCATGCCGCTCCTCTGGTCCATGCCGTGCCTGCTCTGCACTC
CACCTCCACCTACCATGGATCCTATGGCGGCTACGGTAGCTACGGTCTGG
GATACGCCGGCTACGGACACGGAGCCTACCTGCACGCAAGCTTTCTAGAC
CAT
BO12736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 372 | CG4962-PA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-RA | 774 | CG4962-RA | 65..433 | 17..385 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16295052..16295409 | 385..28 | 1790 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 5581..5623 | 283..244 | 109 | 76.7 | Minus |
BO12736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:42 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 1..372 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:21 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 51..430 | 9..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:27 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 70..433 | 22..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:42 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 51..430 | 9..390 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:22 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4962-RA | 70..433 | 22..387 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:22 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16295050..16295411 | 22..387 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:27 Download gff for
BO12736.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16288150..16288511 | 22..387 | 98 | | Minus |
BO12736.pep Sequence
Translation from 16 to 403
> BO12736.pep
MFKLIALISALCAVANAGVISPYSHGYGLGYGAALAPAYAAPAVISHAPI
IKSYAAPIVAHPVATSYANTYKVATKAIPVVHAAPLVHAVPALHSTSTYH
GSYGGYGSYGLGYAGYGHGAYLHASFLDH
BO12736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4962-PA | 123 | CG4962-PA | 1..123 | 1..123 | 646 | 100 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..106 | 1..102 | 153 | 34.9 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..99 | 1..95 | 144 | 36.4 | Plus |