Clone Sequence Records
BO12741.3prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12741.3prime
ATGGTCTAGAAAGCTTGCAACATCATCGGTGTATGGGGATATGCTGTCGA
AACTCAATGGACAATGGCTGTGCATGATTTGCTCGCAGTTCTCCTCCCGC
AGATGCGGCATATGCCGCTTGTCGTGCTCATCCAGTCGGAATATCAATTT
AAGCATTTTGAAAAGCATTCCGCTCTTTTGCTTGGGATTATCCACATCGT
TAATGGCAGTGCAGAACGACTTCAGCATGCAAGCTCGACCATCGAAGCCA
TGTCCATCCAGAGCAGTCTCCAGTTTTGAGAAGAGGTCCCTCTTGAACAG
GCGAAAAAAGACGGCATTATCCTTCTTCTGCTCCTCGATGGATGGAAAGG
GATAATTGGCACGGAAGCCATAGCCGTAGGCATACAGAGTGTTGATTGTC
CACAGATTGTTCTTGCCGTTGGTACGCCACGACATACGTGATCCCTTGCT
GAATTGAAGATAACGCTTGCCGCGACGCAGAATCCTTGTGGAATTGCCGG
ATGCGGAATCAAAGTCGGAGCTGGGAATATTGCTGGTCGATGGACTGACC
ATGTGGCTATCGAAATGTTTGGACAGTGGACTGAGCCCCTCGAAATTGTC
AACGGGTTGGGGTTGAGTGACGGGCGGATTGGACGCCGGTATGGGCACCA
CCAGGAGCAAGTGCAGCATCAGCAATGCCAACGCTGACAGGTGAGTCATG
TCGACTGATAACT
BO12741.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-PA | 684 | CG17780-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
CG17780-PB | 1038 | CG17780-RB | 1..563 | 699..137 | 2815 | 100 | Minus |
CG17780-PB | 1038 | CG17780-RB | 918..1035 | 136..19 | 590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 1279 | CG17780-RA | 167..849 | 701..19 | 3415 | 100 | Minus |
CG17780-RB | 1633 | CG17780-RB | 167..731 | 701..137 | 2825 | 100 | Minus |
CG17780-RB | 1633 | CG17780-RB | 1086..1203 | 136..19 | 590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24384608..24384886 | 423..701 | 1365 | 99.3 | Plus |
3R | 32079331 | 3R | 24384362..24384538 | 254..430 | 885 | 100 | Plus |
3R | 32079331 | 3R | 24383350..24383468 | 19..137 | 595 | 100 | Plus |
3R | 32079331 | 3R | 24384147..24384264 | 137..254 | 590 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 645..682 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 645..682 | 118 | 78.9 | Plus |
BO12741.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:27 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:20 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:46 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 157..853 | 13..713 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:57 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 157..853 | 13..713 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:57 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24383346..24383467 | 13..136 | 97 | <- | Plus |
3R | 24384147..24384263 | 137..253 | 100 | <- | Plus |
3R | 24384362..24384537 | 254..429 | 100 | <- | Plus |
3R | 24384615..24384894 | 430..713 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:46 Download gff for
BO12741.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20209068..20209189 | 13..136 | 97 | <- | Plus |
arm_3R | 20209869..20209985 | 137..253 | 100 | <- | Plus |
arm_3R | 20210084..20210259 | 254..429 | 100 | <- | Plus |
arm_3R | 20210337..20210616 | 430..713 | 98 | | Plus |
BO12741.5prime Sequence
713 bp (712 high quality bases) assembled on 2006-05-08
> BO12741.5prime
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCA
AGCTTTCTAGACC
BO12741.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-PA | 684 | CG17780-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
CG17780-PB | 1038 | CG17780-RB | 1..563 | 17..579 | 2815 | 100 | Plus |
CG17780-PB | 1038 | CG17780-RB | 918..1035 | 580..697 | 590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 1279 | CG17780-RA | 167..849 | 15..697 | 3415 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 167..731 | 15..579 | 2825 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 1086..1203 | 580..697 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24384608..24384886 | 293..15 | 1365 | 99.3 | Minus |
3R | 32079331 | 3R | 24384362..24384538 | 462..286 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24383350..24383468 | 697..579 | 595 | 100 | Minus |
3R | 32079331 | 3R | 24384147..24384264 | 579..462 | 590 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 71..34 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 71..34 | 118 | 78.9 | Minus |
BO12741.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:28 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:21 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:59 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 156..853 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:11 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 156..853 | 1..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:11 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24383346..24383467 | 580..703 | 97 | <- | Minus |
3R | 24384147..24384263 | 463..579 | 100 | <- | Minus |
3R | 24384362..24384537 | 287..462 | 100 | <- | Minus |
3R | 24384615..24384897 | 1..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:59 Download gff for
BO12741.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20209068..20209189 | 580..703 | 97 | <- | Minus |
arm_3R | 20209869..20209985 | 463..579 | 100 | <- | Minus |
arm_3R | 20210084..20210259 | 287..462 | 100 | <- | Minus |
arm_3R | 20210337..20210619 | 1..286 | 98 | | Minus |
BO12741.complete Sequence
715 bp assembled on 2006-10-11
GenBank Submission: FJ632543
> BO12741.complete
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCA
AGCTTTCTAGACCAT
BO12741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 684 | CG17780-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
CG17780-RB | 1038 | CG17780-PB | 1..563 | 17..579 | 2815 | 100 | Plus |
CG17780-RB | 1038 | CG17780-PB | 918..1035 | 580..697 | 590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-RA | 1279 | CG17780-RA | 167..849 | 15..697 | 3415 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 167..731 | 15..579 | 2825 | 100 | Plus |
CG17780-RB | 1633 | CG17780-RB | 1086..1203 | 580..697 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24384608..24384886 | 293..15 | 1365 | 99.3 | Minus |
3R | 32079331 | 3R | 24384362..24384538 | 462..286 | 885 | 100 | Minus |
3R | 32079331 | 3R | 24383350..24383468 | 697..579 | 595 | 100 | Minus |
3R | 32079331 | 3R | 24384147..24384264 | 579..462 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 71..34 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 71..34 | 118 | 78.9 | Minus |
BO12741.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:43 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:23 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 152..849 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:00 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 169..849 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:43 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 152..849 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:26 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17780-RA | 169..849 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:26 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24383346..24383467 | 580..699 | 98 | <- | Minus |
3R | 24384147..24384263 | 463..579 | 100 | <- | Minus |
3R | 24384362..24384537 | 287..462 | 100 | <- | Minus |
3R | 24384615..24384884 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:00 Download gff for
BO12741.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20209869..20209985 | 463..579 | 100 | <- | Minus |
arm_3R | 20210084..20210259 | 287..462 | 100 | <- | Minus |
arm_3R | 20209068..20209189 | 580..699 | 98 | <- | Minus |
arm_3R | 20210337..20210606 | 17..286 | 100 | | Minus |
BO12741.pep Sequence
Translation from 16 to 715
> BO12741.pep
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDVASFLDH
BO12741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17780-PA | 227 | CG17780-PA | 1..227 | 1..227 | 1213 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 1..188 | 1..188 | 990 | 100 | Plus |
CG17780-PB | 345 | CG17780-PB | 186..345 | 73..227 | 405 | 50.6 | Plus |