Clone BO12741 Report

Search the DGRC for BO12741

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG17780-RA
Protein status:BO12741.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO12741.3prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12741.3prime
ATGGTCTAGAAAGCTTGCAACATCATCGGTGTATGGGGATATGCTGTCGA
AACTCAATGGACAATGGCTGTGCATGATTTGCTCGCAGTTCTCCTCCCGC
AGATGCGGCATATGCCGCTTGTCGTGCTCATCCAGTCGGAATATCAATTT
AAGCATTTTGAAAAGCATTCCGCTCTTTTGCTTGGGATTATCCACATCGT
TAATGGCAGTGCAGAACGACTTCAGCATGCAAGCTCGACCATCGAAGCCA
TGTCCATCCAGAGCAGTCTCCAGTTTTGAGAAGAGGTCCCTCTTGAACAG
GCGAAAAAAGACGGCATTATCCTTCTTCTGCTCCTCGATGGATGGAAAGG
GATAATTGGCACGGAAGCCATAGCCGTAGGCATACAGAGTGTTGATTGTC
CACAGATTGTTCTTGCCGTTGGTACGCCACGACATACGTGATCCCTTGCT
GAATTGAAGATAACGCTTGCCGCGACGCAGAATCCTTGTGGAATTGCCGG
ATGCGGAATCAAAGTCGGAGCTGGGAATATTGCTGGTCGATGGACTGACC
ATGTGGCTATCGAAATGTTTGGACAGTGGACTGAGCCCCTCGAAATTGTC
AACGGGTTGGGGTTGAGTGACGGGCGGATTGGACGCCGGTATGGGCACCA
CCAGGAGCAAGTGCAGCATCAGCAATGCCAACGCTGACAGGTGAGTCATG
TCGACTGATAACT

BO12741.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 684 CG17780-RA 1..681 699..19 3405 100 Minus
CG17780-PB 1038 CG17780-RB 1..563 699..137 2815 100 Minus
CG17780-PB 1038 CG17780-RB 918..1035 136..19 590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 1279 CG17780-RA 167..849 701..19 3415 100 Minus
CG17780-RB 1633 CG17780-RB 167..731 701..137 2825 100 Minus
CG17780-RB 1633 CG17780-RB 1086..1203 136..19 590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24384608..24384886 423..701 1365 99.3 Plus
3R 32079331 3R 24384362..24384538 254..430 885 100 Plus
3R 32079331 3R 24383350..24383468 19..137 595 100 Plus
3R 32079331 3R 24384147..24384264 137..254 590 100 Plus
Blast to na_te.dros performed 2015-02-10 18:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2388 645..682 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6856..6893 645..682 118 78.9 Plus

BO12741.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:27 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-PA 1..684 18..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:20 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-PA 1..684 18..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:46 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 157..853 13..713 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:57 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 157..853 13..713 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:57 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24383346..24383467 13..136 97 <- Plus
3R 24384147..24384263 137..253 100 <- Plus
3R 24384362..24384537 254..429 100 <- Plus
3R 24384615..24384894 430..713 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:46 Download gff for BO12741.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20209068..20209189 13..136 97 <- Plus
arm_3R 20209869..20209985 137..253 100 <- Plus
arm_3R 20210084..20210259 254..429 100 <- Plus
arm_3R 20210337..20210616 430..713 98   Plus

BO12741.5prime Sequence

713 bp (712 high quality bases) assembled on 2006-05-08

> BO12741.5prime
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCA
AGCTTTCTAGACC

BO12741.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 684 CG17780-RA 1..681 17..697 3405 100 Plus
CG17780-PB 1038 CG17780-RB 1..563 17..579 2815 100 Plus
CG17780-PB 1038 CG17780-RB 918..1035 580..697 590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 1279 CG17780-RA 167..849 15..697 3415 100 Plus
CG17780-RB 1633 CG17780-RB 167..731 15..579 2825 100 Plus
CG17780-RB 1633 CG17780-RB 1086..1203 580..697 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24384608..24384886 293..15 1365 99.3 Minus
3R 32079331 3R 24384362..24384538 462..286 885 100 Minus
3R 32079331 3R 24383350..24383468 697..579 595 100 Minus
3R 32079331 3R 24384147..24384264 579..462 590 100 Minus
Blast to na_te.dros performed 2015-02-04 03:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2388 71..34 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6856..6893 71..34 118 78.9 Minus

BO12741.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:28 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-PA 1..684 17..698 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:21 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-PA 1..684 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:59 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 156..853 1..703 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:11 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 156..853 1..703 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:11 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24383346..24383467 580..703 97 <- Minus
3R 24384147..24384263 463..579 100 <- Minus
3R 24384362..24384537 287..462 100 <- Minus
3R 24384615..24384897 1..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:59 Download gff for BO12741.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20209068..20209189 580..703 97 <- Minus
arm_3R 20209869..20209985 463..579 100 <- Minus
arm_3R 20210084..20210259 287..462 100 <- Minus
arm_3R 20210337..20210619 1..286 98   Minus

BO12741.complete Sequence

715 bp assembled on 2006-10-11

GenBank Submission: FJ632543

> BO12741.complete
GAAGTTATCAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGC
TGCACTTGCTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACT
CAACCCCAACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACA
TTTCGATAGCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCG
ACTTTGATTCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAG
CGTTATCTTCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGG
CAAGAACAATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCT
TCCGTGCCAATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAAT
GCCGTCTTTTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGAC
TGCTCTGGATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGT
TCTGCACTGCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATG
CTTTTCAAAATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCG
GCATATGCCGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCC
ATTGTCCATTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCA
AGCTTTCTAGACCAT

BO12741.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 684 CG17780-PA 1..681 17..697 3405 100 Plus
CG17780-RB 1038 CG17780-PB 1..563 17..579 2815 100 Plus
CG17780-RB 1038 CG17780-PB 918..1035 580..697 590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-RA 1279 CG17780-RA 167..849 15..697 3415 100 Plus
CG17780-RB 1633 CG17780-RB 167..731 15..579 2825 100 Plus
CG17780-RB 1633 CG17780-RB 1086..1203 580..697 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24384608..24384886 293..15 1365 99.3 Minus
3R 32079331 3R 24384362..24384538 462..286 885 100 Minus
3R 32079331 3R 24383350..24383468 697..579 595 100 Minus
3R 32079331 3R 24384147..24384264 579..462 590 100 Minus
Blast to na_te.dros performed 2014-11-27 14:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2388 71..34 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6856..6893 71..34 118 78.9 Minus

BO12741.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:43 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 1..684 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:23 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 152..849 1..703 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:00 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 169..849 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:43 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 152..849 1..703 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:26 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
CG17780-RA 169..849 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:26 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24383346..24383467 580..699 98 <- Minus
3R 24384147..24384263 463..579 100 <- Minus
3R 24384362..24384537 287..462 100 <- Minus
3R 24384615..24384884 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:00 Download gff for BO12741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20209869..20209985 463..579 100 <- Minus
arm_3R 20210084..20210259 287..462 100 <- Minus
arm_3R 20209068..20209189 580..699 98 <- Minus
arm_3R 20210337..20210606 17..286 100   Minus

BO12741.pep Sequence

Translation from 16 to 715

> BO12741.pep
MTHLSALALLMLHLLLVVPIPASNPPVTQPQPVDNFEGLSPLSKHFDSHM
VSPSTSNIPSSDFDSASGNSTRILRRGKRYLQFSKGSRMSWRTNGKNNLW
TINTLYAYGYGFRANYPFPSIEEQKKDNAVFFRLFKRDLFSKLETALDGH
GFDGRACMLKSFCTAINDVDNPKQKSGMLFKMLKLIFRLDEHDKRHMPHL
REENCEQIMHSHCPLSFDSISPYTDDVASFLDH

BO12741.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17780-PA 227 CG17780-PA 1..227 1..227 1213 100 Plus
CG17780-PB 345 CG17780-PB 1..188 1..188 990 100 Plus
CG17780-PB 345 CG17780-PB 186..345 73..227 405 50.6 Plus