Clone BO12742 Report

Search the DGRC for BO12742

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG5660-RA
Protein status:BO12742.pep: Inserted from web
Sequenced Size:3017

Clone Sequence Records

BO12742.3prime Sequence

922 bp (838 high quality bases) assembled on 2006-05-08

> BO12742.3prime
ATGGTCTAGAAAGCTTGCGGACAATACTGCCAGCCGAGTGAGACTGTTGA
TTTCCGCCTCCAACTCTTTGACCTTATTTTCGAAATGTGACTTAACTTTC
TTGTCGGCCATCAGTTGGAAGGCTTCGTTATCCAGGCGCATGCGATACCG
CTGCAATTCGGTGACCAACTTCTTCAGTTTTTTGGCATTGGCCTTCTGCA
TTTCGTCTCGTTTTTCCGGCGTCAGATCCAATCCATCGCTCAATTTCAAG
CCAAAGGAGCAGAGTGCTCCTGCCGTTGAGAAGTAGCTGAGTTGCTTCGA
AATCTTTGAGCTCTCGTCAAACAATTCCAGTTCCACGTCTTCGCAGCGAG
ATAACACCTTGATCTGCGGCAAATGACGACGAAGCACTCCTTCCGAGTCC
GTATTCTGGGCAAACAAACTGAGTTGCGGATGATGGCGCTTGCTAATCTC
ATTGCGACTCTTAACCTGTCGCACATTATGGCAGATGTTCACTATTTCGT
TGACCTCTTCCTCCAACTTTTCATCCTTGTAGTCGGACAGTTTAAGCTCT
ATATTAAGGGGCACATGCTGCAGTAATTCGGAAGCCACAAAGGGAGCATA
CGGGGCCATGGCCTGCAGTCCCCAGCTAAGGCAAGCGGTCAGGGTGCCCA
CATGGATGTAGGCATCAGCACTGCGATTTCCTATCGCAGGTTTGGTTGTT
TCCAAGTAAGTATCACAGAGATATTGATAGAAGAAGGTCTTCAGGGCTGC
TGTGGCCAAGTGGAAATTGTAGTTGCTGTAGCTCTGCGAGCAGACAGACA
AGGTCTCCGCGAGGCGTCCGACGATCCAGCGATCCCAAAAGGCCAGATTC
ACACCTTCAAGAGTCTCAAACTGATGCAGCGAGATTCCCAGTCCCTTGGC
TGAGCCGAGGGTAATCGCATAG

BO12742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-PA 2985 CG5660-RA 2087..2982 914..19 4430 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-RB 3254 CG5660-RB 2221..3125 922..19 4470 99.7 Minus
CG5660-RA 3148 CG5660-RA 2115..3019 922..19 4470 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8961515..8962147 71..703 3165 100 Plus
3L 28110227 3L 8962205..8962417 702..914 1035 99.1 Plus
3L 28110227 3L 8961403..8961458 19..74 280 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:08:46 has no hits.

BO12742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:29 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-PA 2078..2985 15..922 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:22 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-PA 2078..2985 15..922 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:30 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 2115..3022 15..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:52 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 2115..3022 15..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:52 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8961404..8961456 20..72 100 <- Plus
3L 8961517..8962146 73..702 100 <- Plus
3L 8962206..8962426 703..922 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:30 Download gff for BO12742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8954504..8954556 20..72 100 <- Plus
arm_3L 8954617..8955246 73..702 100 <- Plus
arm_3L 8955306..8955526 703..922 98   Plus

BO12742.5prime Sequence

923 bp (826 high quality bases) assembled on 2006-05-08

> BO12742.5prime
GAAGTTATCAGTCGACCATGCAAATAATTGGGAATTGTAGCAGTAAACTG
CTCAGACACAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAG
TACCCTTAAAGATGCGGCTAATGAGCTTCCCTTGGCAGCAGGATACCAGC
CACAACCAGTGGAAAATGCTTACTGGGAGCGGGAGCATCGCCAGGCAAAT
TTGCCCAAGGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCT
TCTACCGCCACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGA
TGGCCACCGTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTAC
CAGGTGGACTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGT
GGTCGTAGAGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAAT
TGGGACGTTCTGCTTTTCTGGACGAAGTATGGCGCTGGAAGGCGGAAAAG
GGTGCTGGTATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTG
GCAACGAGAATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACG
TAGCTTTCGAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCG
GTTGTCAACTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGT
GGACAGTGTAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACG
ATCACAAAGTACTCTTTGGCAGAATGTACGATTTCGCCTATCACGTAGTG
GATGGTGAAGCACTGCCCGATGGTTCGGTTGAAGAGATTGTGGTGTCTAC
CACTAGACCAGAGACAATTTTGGGTGATGTAGCTGTCGCAGTACATCCGC
TGGATCCGCGCTACGCCAAGTAC

BO12742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-PA 2985 CG5660-RA 1..906 18..923 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-RB 3254 CG5660-RB 144..1049 18..923 4530 100 Plus
CG5660-RA 3148 CG5660-RA 38..943 18..923 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8963653..8964466 923..110 4070 100 Minus
3L 28110227 3L 8964528..8964626 116..18 480 99 Minus
Blast to na_te.dros performed on 2015-02-11 10:02:40 has no hits.

BO12742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:30 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-PA 1..906 18..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:23 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-PA 1..906 18..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:52 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 38..943 18..923 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:44 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 38..943 18..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:44 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8963653..8964464 112..923 100 <- Minus
3L 8964533..8964626 18..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:52 Download gff for BO12742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8956753..8957564 112..923 100 <- Minus
arm_3L 8957633..8957726 18..111 100   Minus

BO12742.complete Sequence

3017 bp assembled on 2008-08-14

GenBank Submission: KX799830

> BO12742.complete
GAAGTTATCAGTCGACCATGCAAATAATTGGGAATTGTAGCAGTAAACTG
CTCAGACACAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAG
TACCCTTAAAGATGCGGCTAATGAGCTTCCCTTGGCAGCAGGATACCAGC
CACAACCAGTGGAAAATGCTTACTGGGAGCGGGAGCATCGCCAGGCAAAT
TTGCCCAAGGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCT
TCTACCGCCACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGA
TGGCCACCGTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTAC
CAGGTGGACTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGT
GGTCGTAGAGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAAT
TGGGACGTTCTGCTTTTCTGGACGAAGTATGGCGCTGGAAGGCGGAAAAG
GGTGCTGGTATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTG
GCAACGAGAATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACG
TAGCTTTCGAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCG
GTTGTCAACTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGT
GGACAGTGTAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACG
ATCACAAAGTACTCTTTGGCAGAATGTACGATTTCGCCTATCACGTAGTG
GATGGTGAAGCACTGCCCGATGGTTCGGTTGAAGAGATTGTGGTGTCTAC
CACTAGACCAGAGACAATTTTGGGTGATGTAGCTGTCGCAGTACATCCGC
TGGATCCGCGCTACGCCAAGTACCGAAACATTGATCAGGTTAAGCTCAAG
CATCCTTTCCGTGACGACACCATTCCACTCGTTTTCGATATCACCGTGGA
CCAGGAGTTTGGCACCGGGGCAGTGAAAATCACACCAGCCCATGACAAAT
TTGATTTCGAGCTGGCCACTCGCCATAAGCTTGAACCTCGCCAGGTCTTT
ACTGAAACGGGTCTTGTGGTGGATGCCTATTCTGAGTACAAGGGTATTCC
GCGCTTCGAGGCGCGAGATCTCATCGTCAATCGCCTGGAAGAGATGGATT
TGCTGCGACAGGTGCGCTCTCATACCATGCAGTTGCCCATCTGCTCGCGT
TCCAAGGACGTCATAGAGTACATGATATTGCCGCAATGGTTTCTTAAGTG
CAAAGACTTGGCAAAGGATGCCTTATCTGAACTTCATAGTGGACGTCTGC
AAATCCTGCCTCCGAACTTCGAAACGGAGTGGGAACGCTGGCTACAGGAT
AGCCGCGACTGGTGCATTTCCCGGCAGTTGTGGTGGGGGCATCAGGTGCC
CGCATACGAGGTCATCGACTCCCAGGGAAACAGTCAATGGGTGGCTGCCC
TTGACGAGAAGACAGCTAGGCAGAAAGCCATGAGACTTATTGGTAGCGAA
GAATTTACATTGAAACGTGATCCGGATGTACTGGACACTTGGTTTTCATC
ATCGCTGCTGCCTTTCTCCACAGCCGGTTGGCCAGAGGAGAGCTACAAAG
AAAGATATCCTTTGGACATAATGCAGACTGGCCATGATATTATCTTCTTT
TGGGTGGCGCGCATGATGATGTTGGGTCTGAAGCTGACCGGCGAGGCACC
CTTTCAGAGAATTTTGCTAAACGGCATTGTGTGCGATGCTCATGGCCGGA
AGATGTCCAAGAGTATCGGCAACATCGTGGCCCCACAGCAGGTGGTTCAG
GGCGCCAGTTTAGAGAGCCTGAAGGCTGGCTTAGAGCAATCGTGCGAGGC
GGGCATTATTACGCCTTCAGAGTTAAAGGCCTCCACGATTGGAATGACGC
AAATGTTCCCCAATGGCATTCAAGAGTGCGGCACCGATGCTCTACGCTTC
ACCCTGATGAGCCACAACATCAAGAGTCACTTCATTAGCTTCGATGTGAA
CGCCTGCCACACCAATAAGCTTTTCCTAAACAAAGTATGGCAAGCTATGC
GATTTACCCTCGGCTCAGCCAAGGGACTGGGAATCTCGCTGCATCAGTTT
GAGACTCTTGAAGGTGTGAATCTGGGCCTTTGGGATCGCTGGATCGTCGG
ACGCCTCGCGGAGACCTTGTCTGTCTGCTCGCAGAGCTACAGCAACTACA
ATTTCCACTTGGCCACAGCAGCCCTGAAGACCTTCTTCTATCAATATCTC
TGTGATACTTACTTGGAAACAACCAAACCTGCGATAGGAAATCGCAGTGC
TGATGCCTACATCCATGTGGGCACCCTGACCGCTTGCCTTAGCTGGGGAC
TGCAGGCCATGGCCCCGTATGCTCCCTTTGTGGCTTCCGAATTACTGCAG
CATGTGCCCCTTAATATAGAGCTTAAACTGTCCGACTACAAGGATGAAAA
GTTGGAGGAAGAGGTCAACGAAATAGTGAACATCTGCCATAATGTGCGAC
AGGTTAAGAGTCGCAATGAGATTAGCAAGCGCCATCATCCGCAACTCAGT
TTGTTTGCCCAGAATACGGACTCGGAAGGAGTGCTTCGTCGTCATTTGCC
GCAGATCAAGGTGTTATCTCGCTGCGAAGACGTGGAACTGGAATTGTTTG
ACGAGAGCTCAAAGATTTCGAAGCAACTCAGCTACTTCTCAACGGCAGGA
GCACTCTGCTCCTTTGGCTTGAAATTGAGCGATGGATTGGATCTGACGCC
GGAAAAACGAGACGAAATGCAGAAGGCCAATGCCAAAAAACTGAAGAAGT
TGGTCACCGAATTGCAGCGGTATCGCATGCGCCTGGATAACGAAGCCTTC
CAACTGATGGCCGACAAGAAAGTTAAGTCACATTTCGAAAATAAGGTCAA
AGAGTTGGAGGCGGAAATCAACAGTCTCACTCGGCTGGCAGTATTGTCCG
CAAGCTTTCTAGACCAT

BO12742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-RB 2985 CG5660-PB 1..2982 18..2999 14910 100 Plus
CG5660-RA 2985 CG5660-PA 1..2982 18..2999 14910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-RB 3254 CG5660-RB 144..3125 18..2999 14910 100 Plus
CG5660-RA 3148 CG5660-RA 38..3019 18..2999 14910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8962711..8964466 1865..110 8780 100 Minus
3L 28110227 3L 8961515..8962147 2947..2315 3165 100 Minus
3L 28110227 3L 8962205..8962657 2316..1864 2265 100 Minus
3L 28110227 3L 8964528..8964626 116..18 480 99 Minus
3L 28110227 3L 8961403..8961458 2999..2944 280 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:21:00 has no hits.

BO12742.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:02 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 38..3022 18..3003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:36 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 37..3019 17..3001 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:55 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 37..3019 17..3001 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:20 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
CG5660-RA 37..3019 17..3001 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:20 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8961401..8961456 2946..3001 96 <- Minus
3L 8961517..8962146 2316..2945 100 <- Minus
3L 8962206..8962655 1866..2315 100 <- Minus
3L 8962711..8964464 112..1865 100 <- Minus
3L 8964533..8964626 17..111 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:36 Download gff for BO12742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8954501..8954556 2946..3001 96 <- Minus
arm_3L 8954617..8955246 2316..2945 100 <- Minus
arm_3L 8955306..8955755 1866..2315 100 <- Minus
arm_3L 8955811..8957564 112..1865 100 <- Minus
arm_3L 8957633..8957726 17..111 98   Minus

BO12742.pep Sequence

Translation from 17 to 3017

> BO12742.pep
MQIIGNCSSKLLRHKYLCQPRVYSLYYSTLKDAANELPLAAGYQPQPVEN
AYWEREHRQANLPKASASSCKRGTYRMLLPPPNVTGNLHLGHALMATVQD
VIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAF
LDEVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERL
FEEGLIQRRNSVVNWCTALRSAISDIEVDSVEITEPVEISVPGYDHKVLF
GRMYDFAYHVVDGEALPDGSVEEIVVSTTRPETILGDVAVAVHPLDPRYA
KYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFDFELA
TRHKLEPRQVFTETGLVVDAYSEYKGIPRFEARDLIVNRLEEMDLLRQVR
SHTMQLPICSRSKDVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPN
FETEWERWLQDSRDWCISRQLWWGHQVPAYEVIDSQGNSQWVAALDEKTA
RQKAMRLIGSEEFTLKRDPDVLDTWFSSSLLPFSTAGWPEESYKERYPLD
IMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGIVCDAHGRKMSKSI
GNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNG
IQECGTDALRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGS
AKGLGISLHQFETLEGVNLGLWDRWIVGRLAETLSVCSQSYSNYNFHLAT
AALKTFFYQYLCDTYLETTKPAIGNRSADAYIHVGTLTACLSWGLQAMAP
YAPFVASELLQHVPLNIELKLSDYKDEKLEEEVNEIVNICHNVRQVKSRN
EISKRHHPQLSLFAQNTDSEGVLRRHLPQIKVLSRCEDVELELFDESSKI
SKQLSYFSTAGALCSFGLKLSDGLDLTPEKRDEMQKANAKKLKKLVTELQ
RYRMRLDNEAFQLMADKKVKSHFENKVKELEAEINSLTRLAVLSASFLDH

BO12742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5660-PB 994 CG5660-PB 1..994 1..994 5203 100 Plus
CG5660-PA 994 CG5660-PA 1..994 1..994 5203 100 Plus
Aats-val-PA 1049 CG4062-PA 84..1039 31..987 1704 38 Plus
Aats-val-PB 1049 CG4062-PB 84..1039 31..987 1704 38 Plus
Aats-val-PC 1055 CG4062-PC 84..1045 31..987 1698 37.8 Plus