Clone Sequence Records
BO12742.3prime Sequence
922 bp (838 high quality bases) assembled on 2006-05-08
> BO12742.3prime
ATGGTCTAGAAAGCTTGCGGACAATACTGCCAGCCGAGTGAGACTGTTGA
TTTCCGCCTCCAACTCTTTGACCTTATTTTCGAAATGTGACTTAACTTTC
TTGTCGGCCATCAGTTGGAAGGCTTCGTTATCCAGGCGCATGCGATACCG
CTGCAATTCGGTGACCAACTTCTTCAGTTTTTTGGCATTGGCCTTCTGCA
TTTCGTCTCGTTTTTCCGGCGTCAGATCCAATCCATCGCTCAATTTCAAG
CCAAAGGAGCAGAGTGCTCCTGCCGTTGAGAAGTAGCTGAGTTGCTTCGA
AATCTTTGAGCTCTCGTCAAACAATTCCAGTTCCACGTCTTCGCAGCGAG
ATAACACCTTGATCTGCGGCAAATGACGACGAAGCACTCCTTCCGAGTCC
GTATTCTGGGCAAACAAACTGAGTTGCGGATGATGGCGCTTGCTAATCTC
ATTGCGACTCTTAACCTGTCGCACATTATGGCAGATGTTCACTATTTCGT
TGACCTCTTCCTCCAACTTTTCATCCTTGTAGTCGGACAGTTTAAGCTCT
ATATTAAGGGGCACATGCTGCAGTAATTCGGAAGCCACAAAGGGAGCATA
CGGGGCCATGGCCTGCAGTCCCCAGCTAAGGCAAGCGGTCAGGGTGCCCA
CATGGATGTAGGCATCAGCACTGCGATTTCCTATCGCAGGTTTGGTTGTT
TCCAAGTAAGTATCACAGAGATATTGATAGAAGAAGGTCTTCAGGGCTGC
TGTGGCCAAGTGGAAATTGTAGTTGCTGTAGCTCTGCGAGCAGACAGACA
AGGTCTCCGCGAGGCGTCCGACGATCCAGCGATCCCAAAAGGCCAGATTC
ACACCTTCAAGAGTCTCAAACTGATGCAGCGAGATTCCCAGTCCCTTGGC
TGAGCCGAGGGTAATCGCATAG
BO12742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-PA | 2985 | CG5660-RA | 2087..2982 | 914..19 | 4430 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-RB | 3254 | CG5660-RB | 2221..3125 | 922..19 | 4470 | 99.7 | Minus |
CG5660-RA | 3148 | CG5660-RA | 2115..3019 | 922..19 | 4470 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8961515..8962147 | 71..703 | 3165 | 100 | Plus |
3L | 28110227 | 3L | 8962205..8962417 | 702..914 | 1035 | 99.1 | Plus |
3L | 28110227 | 3L | 8961403..8961458 | 19..74 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:08:46 has no hits.
BO12742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:29 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-PA | 2078..2985 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:22 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-PA | 2078..2985 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:30 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 2115..3022 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:52 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 2115..3022 | 15..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:52 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8961404..8961456 | 20..72 | 100 | <- | Plus |
3L | 8961517..8962146 | 73..702 | 100 | <- | Plus |
3L | 8962206..8962426 | 703..922 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:30 Download gff for
BO12742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8954504..8954556 | 20..72 | 100 | <- | Plus |
arm_3L | 8954617..8955246 | 73..702 | 100 | <- | Plus |
arm_3L | 8955306..8955526 | 703..922 | 98 | | Plus |
BO12742.5prime Sequence
923 bp (826 high quality bases) assembled on 2006-05-08
> BO12742.5prime
GAAGTTATCAGTCGACCATGCAAATAATTGGGAATTGTAGCAGTAAACTG
CTCAGACACAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAG
TACCCTTAAAGATGCGGCTAATGAGCTTCCCTTGGCAGCAGGATACCAGC
CACAACCAGTGGAAAATGCTTACTGGGAGCGGGAGCATCGCCAGGCAAAT
TTGCCCAAGGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCT
TCTACCGCCACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGA
TGGCCACCGTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTAC
CAGGTGGACTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGT
GGTCGTAGAGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAAT
TGGGACGTTCTGCTTTTCTGGACGAAGTATGGCGCTGGAAGGCGGAAAAG
GGTGCTGGTATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTG
GCAACGAGAATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACG
TAGCTTTCGAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCG
GTTGTCAACTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGT
GGACAGTGTAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACG
ATCACAAAGTACTCTTTGGCAGAATGTACGATTTCGCCTATCACGTAGTG
GATGGTGAAGCACTGCCCGATGGTTCGGTTGAAGAGATTGTGGTGTCTAC
CACTAGACCAGAGACAATTTTGGGTGATGTAGCTGTCGCAGTACATCCGC
TGGATCCGCGCTACGCCAAGTAC
BO12742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-PA | 2985 | CG5660-RA | 1..906 | 18..923 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-RB | 3254 | CG5660-RB | 144..1049 | 18..923 | 4530 | 100 | Plus |
CG5660-RA | 3148 | CG5660-RA | 38..943 | 18..923 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8963653..8964466 | 923..110 | 4070 | 100 | Minus |
3L | 28110227 | 3L | 8964528..8964626 | 116..18 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:02:40 has no hits.
BO12742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:30 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-PA | 1..906 | 18..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:23 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-PA | 1..906 | 18..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:52 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 38..943 | 18..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:44 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 38..943 | 18..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:44 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8963653..8964464 | 112..923 | 100 | <- | Minus |
3L | 8964533..8964626 | 18..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:52 Download gff for
BO12742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8956753..8957564 | 112..923 | 100 | <- | Minus |
arm_3L | 8957633..8957726 | 18..111 | 100 | | Minus |
BO12742.complete Sequence
3017 bp assembled on 2008-08-14
GenBank Submission: KX799830
> BO12742.complete
GAAGTTATCAGTCGACCATGCAAATAATTGGGAATTGTAGCAGTAAACTG
CTCAGACACAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAG
TACCCTTAAAGATGCGGCTAATGAGCTTCCCTTGGCAGCAGGATACCAGC
CACAACCAGTGGAAAATGCTTACTGGGAGCGGGAGCATCGCCAGGCAAAT
TTGCCCAAGGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCT
TCTACCGCCACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGA
TGGCCACCGTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTAC
CAGGTGGACTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGT
GGTCGTAGAGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAAT
TGGGACGTTCTGCTTTTCTGGACGAAGTATGGCGCTGGAAGGCGGAAAAG
GGTGCTGGTATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTG
GCAACGAGAATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACG
TAGCTTTCGAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCG
GTTGTCAACTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGT
GGACAGTGTAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACG
ATCACAAAGTACTCTTTGGCAGAATGTACGATTTCGCCTATCACGTAGTG
GATGGTGAAGCACTGCCCGATGGTTCGGTTGAAGAGATTGTGGTGTCTAC
CACTAGACCAGAGACAATTTTGGGTGATGTAGCTGTCGCAGTACATCCGC
TGGATCCGCGCTACGCCAAGTACCGAAACATTGATCAGGTTAAGCTCAAG
CATCCTTTCCGTGACGACACCATTCCACTCGTTTTCGATATCACCGTGGA
CCAGGAGTTTGGCACCGGGGCAGTGAAAATCACACCAGCCCATGACAAAT
TTGATTTCGAGCTGGCCACTCGCCATAAGCTTGAACCTCGCCAGGTCTTT
ACTGAAACGGGTCTTGTGGTGGATGCCTATTCTGAGTACAAGGGTATTCC
GCGCTTCGAGGCGCGAGATCTCATCGTCAATCGCCTGGAAGAGATGGATT
TGCTGCGACAGGTGCGCTCTCATACCATGCAGTTGCCCATCTGCTCGCGT
TCCAAGGACGTCATAGAGTACATGATATTGCCGCAATGGTTTCTTAAGTG
CAAAGACTTGGCAAAGGATGCCTTATCTGAACTTCATAGTGGACGTCTGC
AAATCCTGCCTCCGAACTTCGAAACGGAGTGGGAACGCTGGCTACAGGAT
AGCCGCGACTGGTGCATTTCCCGGCAGTTGTGGTGGGGGCATCAGGTGCC
CGCATACGAGGTCATCGACTCCCAGGGAAACAGTCAATGGGTGGCTGCCC
TTGACGAGAAGACAGCTAGGCAGAAAGCCATGAGACTTATTGGTAGCGAA
GAATTTACATTGAAACGTGATCCGGATGTACTGGACACTTGGTTTTCATC
ATCGCTGCTGCCTTTCTCCACAGCCGGTTGGCCAGAGGAGAGCTACAAAG
AAAGATATCCTTTGGACATAATGCAGACTGGCCATGATATTATCTTCTTT
TGGGTGGCGCGCATGATGATGTTGGGTCTGAAGCTGACCGGCGAGGCACC
CTTTCAGAGAATTTTGCTAAACGGCATTGTGTGCGATGCTCATGGCCGGA
AGATGTCCAAGAGTATCGGCAACATCGTGGCCCCACAGCAGGTGGTTCAG
GGCGCCAGTTTAGAGAGCCTGAAGGCTGGCTTAGAGCAATCGTGCGAGGC
GGGCATTATTACGCCTTCAGAGTTAAAGGCCTCCACGATTGGAATGACGC
AAATGTTCCCCAATGGCATTCAAGAGTGCGGCACCGATGCTCTACGCTTC
ACCCTGATGAGCCACAACATCAAGAGTCACTTCATTAGCTTCGATGTGAA
CGCCTGCCACACCAATAAGCTTTTCCTAAACAAAGTATGGCAAGCTATGC
GATTTACCCTCGGCTCAGCCAAGGGACTGGGAATCTCGCTGCATCAGTTT
GAGACTCTTGAAGGTGTGAATCTGGGCCTTTGGGATCGCTGGATCGTCGG
ACGCCTCGCGGAGACCTTGTCTGTCTGCTCGCAGAGCTACAGCAACTACA
ATTTCCACTTGGCCACAGCAGCCCTGAAGACCTTCTTCTATCAATATCTC
TGTGATACTTACTTGGAAACAACCAAACCTGCGATAGGAAATCGCAGTGC
TGATGCCTACATCCATGTGGGCACCCTGACCGCTTGCCTTAGCTGGGGAC
TGCAGGCCATGGCCCCGTATGCTCCCTTTGTGGCTTCCGAATTACTGCAG
CATGTGCCCCTTAATATAGAGCTTAAACTGTCCGACTACAAGGATGAAAA
GTTGGAGGAAGAGGTCAACGAAATAGTGAACATCTGCCATAATGTGCGAC
AGGTTAAGAGTCGCAATGAGATTAGCAAGCGCCATCATCCGCAACTCAGT
TTGTTTGCCCAGAATACGGACTCGGAAGGAGTGCTTCGTCGTCATTTGCC
GCAGATCAAGGTGTTATCTCGCTGCGAAGACGTGGAACTGGAATTGTTTG
ACGAGAGCTCAAAGATTTCGAAGCAACTCAGCTACTTCTCAACGGCAGGA
GCACTCTGCTCCTTTGGCTTGAAATTGAGCGATGGATTGGATCTGACGCC
GGAAAAACGAGACGAAATGCAGAAGGCCAATGCCAAAAAACTGAAGAAGT
TGGTCACCGAATTGCAGCGGTATCGCATGCGCCTGGATAACGAAGCCTTC
CAACTGATGGCCGACAAGAAAGTTAAGTCACATTTCGAAAATAAGGTCAA
AGAGTTGGAGGCGGAAATCAACAGTCTCACTCGGCTGGCAGTATTGTCCG
CAAGCTTTCTAGACCAT
BO12742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-RB | 2985 | CG5660-PB | 1..2982 | 18..2999 | 14910 | 100 | Plus |
CG5660-RA | 2985 | CG5660-PA | 1..2982 | 18..2999 | 14910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-RB | 3254 | CG5660-RB | 144..3125 | 18..2999 | 14910 | 100 | Plus |
CG5660-RA | 3148 | CG5660-RA | 38..3019 | 18..2999 | 14910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8962711..8964466 | 1865..110 | 8780 | 100 | Minus |
3L | 28110227 | 3L | 8961515..8962147 | 2947..2315 | 3165 | 100 | Minus |
3L | 28110227 | 3L | 8962205..8962657 | 2316..1864 | 2265 | 100 | Minus |
3L | 28110227 | 3L | 8964528..8964626 | 116..18 | 480 | 99 | Minus |
3L | 28110227 | 3L | 8961403..8961458 | 2999..2944 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:00 has no hits.
BO12742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:02 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 38..3022 | 18..3003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:36 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 37..3019 | 17..3001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:55 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 37..3019 | 17..3001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:20 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5660-RA | 37..3019 | 17..3001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:20 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8961401..8961456 | 2946..3001 | 96 | <- | Minus |
3L | 8961517..8962146 | 2316..2945 | 100 | <- | Minus |
3L | 8962206..8962655 | 1866..2315 | 100 | <- | Minus |
3L | 8962711..8964464 | 112..1865 | 100 | <- | Minus |
3L | 8964533..8964626 | 17..111 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:36 Download gff for
BO12742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8954501..8954556 | 2946..3001 | 96 | <- | Minus |
arm_3L | 8954617..8955246 | 2316..2945 | 100 | <- | Minus |
arm_3L | 8955306..8955755 | 1866..2315 | 100 | <- | Minus |
arm_3L | 8955811..8957564 | 112..1865 | 100 | <- | Minus |
arm_3L | 8957633..8957726 | 17..111 | 98 | | Minus |
BO12742.pep Sequence
Translation from 17 to 3017
> BO12742.pep
MQIIGNCSSKLLRHKYLCQPRVYSLYYSTLKDAANELPLAAGYQPQPVEN
AYWEREHRQANLPKASASSCKRGTYRMLLPPPNVTGNLHLGHALMATVQD
VIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAF
LDEVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERL
FEEGLIQRRNSVVNWCTALRSAISDIEVDSVEITEPVEISVPGYDHKVLF
GRMYDFAYHVVDGEALPDGSVEEIVVSTTRPETILGDVAVAVHPLDPRYA
KYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFDFELA
TRHKLEPRQVFTETGLVVDAYSEYKGIPRFEARDLIVNRLEEMDLLRQVR
SHTMQLPICSRSKDVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPN
FETEWERWLQDSRDWCISRQLWWGHQVPAYEVIDSQGNSQWVAALDEKTA
RQKAMRLIGSEEFTLKRDPDVLDTWFSSSLLPFSTAGWPEESYKERYPLD
IMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGIVCDAHGRKMSKSI
GNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNG
IQECGTDALRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGS
AKGLGISLHQFETLEGVNLGLWDRWIVGRLAETLSVCSQSYSNYNFHLAT
AALKTFFYQYLCDTYLETTKPAIGNRSADAYIHVGTLTACLSWGLQAMAP
YAPFVASELLQHVPLNIELKLSDYKDEKLEEEVNEIVNICHNVRQVKSRN
EISKRHHPQLSLFAQNTDSEGVLRRHLPQIKVLSRCEDVELELFDESSKI
SKQLSYFSTAGALCSFGLKLSDGLDLTPEKRDEMQKANAKKLKKLVTELQ
RYRMRLDNEAFQLMADKKVKSHFENKVKELEAEINSLTRLAVLSASFLDH
BO12742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5660-PB | 994 | CG5660-PB | 1..994 | 1..994 | 5203 | 100 | Plus |
CG5660-PA | 994 | CG5660-PA | 1..994 | 1..994 | 5203 | 100 | Plus |
Aats-val-PA | 1049 | CG4062-PA | 84..1039 | 31..987 | 1704 | 38 | Plus |
Aats-val-PB | 1049 | CG4062-PB | 84..1039 | 31..987 | 1704 | 38 | Plus |
Aats-val-PC | 1055 | CG4062-PC | 84..1045 | 31..987 | 1698 | 37.8 | Plus |