Clone Sequence Records
BO12743.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-09
> BO12743.3prime
ATGGTCTAGAAAGCTTGCTGTCGATTCATAACTCGTCAGCAAGGCAGCAT
CAACAGGCTCTAAACAACTGGGACAAGTTAGACTTCTCAACAACCAATCA
TCTATACAATTAACATGATAAATATGCATGCAAGGTAGATAACGTACGGC
TTCATTAACACAAAATTCAGCCATGCAGATAACACATTCTCGTGCTTTCT
TTGAGCTCCCGTCGTATGTTCCTATTGGCAAGTACTGCATTAATCCAATT
CGCTTTGCAATTTTCACTTGATTTTCATCGGAAAGTTGACGATTGTTAGA
AGATGGTGTTAGCGTTGTCGAAGACGACGTGGAAGGGTACAATTCTCGTT
GATAATGCTCTCCCTGATGATACACTGGCTGTGTCCCGCTGATTTGACTG
TCATTGCCGCGTAAAAGTGAAATGTCATCTGAAGTGCTAATTTTTAAGCA
ATTACCCATGTCGACTGATAACT
BO12743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-PA | 444 | CG32850-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-RA | 2311 | CG32850-RA | 282..722 | 459..19 | 2205 | 100 | Minus |
| CG32850-RB | 3965 | CG32850-RB | 60..497 | 459..19 | 2150 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 319445..319796 | 370..19 | 1745 | 99.7 | Minus |
| 4 | 1348131 | 4 | 316417..316509 | 459..367 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:37:40 has no hits.
BO12743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:32 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-PA | 1..444 | 18..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:25 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-PA | 1..444 | 18..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:50:35 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 10..467 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:48 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 10..467 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:48 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 316411..316509 | 367..467 | 97 | -> | Minus |
| 4 | 319449..319803 | 10..366 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:50:35 Download gff for
BO12743.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 337037..337135 | 367..467 | 97 | -> | Minus |
| arm_4 | 340075..340429 | 10..366 | 98 | | Minus |
BO12743.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-08
> BO12743.5prime
GAAGTTATCAGTCGACATGGGTAATTGCTTAAAAATTAGCACTTCAGATG
ACATTTCACTTTTACGCGGCAATGACAGTCAAATCAGCGGGACACAGCCA
GTGTATCATCAGGGAGAGCATTATCAACGAGAATTGTACCCTTCCACGTC
GTCTTCGACAACGCTAACACCATCTTCTAACAATCGTCAACTTTCCGATG
AAAATCAAGTGAAAATTGCAAAGCGAATTGGATTAATGCAGTACTTGCCA
ATAGGAACATACGACGGGAGCTCAAAGAAAGCACGAGAATGTGTTATCTG
CATGGCTGAATTTTGTGTTAATGAAGCCGTACGTTATCTACCTTGCATGC
ATATTTATCATGTTAATTGTATAGATGATTGGTTGTTGAGAAGTCTAACT
TGTCCCAGTTGTTTAGAGCCTGTTGATGCTGCCTTGCTGACGAGTTATGA
ATCGACAGCAAGCTTTCTAGACC
BO12743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-PA | 444 | CG32850-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-RA | 2311 | CG32850-RA | 282..722 | 17..457 | 2205 | 100 | Plus |
| CG32850-RB | 3965 | CG32850-RB | 60..497 | 17..457 | 2150 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 319445..319796 | 106..457 | 1745 | 99.7 | Plus |
| 4 | 1348131 | 4 | 316417..316509 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:23:10 has no hits.
BO12743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:33 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-PA | 1..444 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:26 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-PA | 1..444 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:29 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:39 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 276..729 | 9..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:39 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 316411..316509 | 9..109 | 97 | -> | Plus |
| 4 | 319449..319803 | 110..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:29 Download gff for
BO12743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 337037..337135 | 9..109 | 97 | -> | Plus |
| arm_4 | 340075..340429 | 110..466 | 98 | | Plus |
BO12743.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ632544
> BO12743.complete
GAAGTTATCAGTCGACATGGGTAATTGCTTAAAAATTAGCACTTCAGATG
ACATTTCACTTTTACGCGGCAATGACAGTCAAATCAGCGGGACACAGCCA
GTGTATCATCAGGGAGAGCATTATCAACGAGAATTGTACCCTTCCACGTC
GTCTTCGACAACGCTAACACCATCTTCTAACAATCGTCAACTTTCCGATG
AAAATCAAGTGAAAATTGCAAAGCGAATTGGATTAATGCAGTACTTGCCA
ATAGGAACATACGACGGGAGCTCAAAGAAAGCACGAGAATGTGTTATCTG
CATGGCTGAATTTTGTGTTAATGAAGCCGTACGTTATCTACCTTGCATGC
ATATTTATCATGTTAATTGTATAGATGATTGGTTGTTGAGAAGTCTAACT
TGTCCCAGTTGTTTAGAGCCTGTTGATGCTGCCTTGCTGACGAGTTATGA
ATCGACAGCAAGCTTTCTAGACCAT
BO12743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-RA | 444 | CG32850-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
| CG32850-RB | 441 | CG32850-PB | 1..438 | 17..457 | 2125 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-RA | 2311 | CG32850-RA | 282..722 | 17..457 | 2205 | 100 | Plus |
| CG32850-RB | 3965 | CG32850-RB | 60..497 | 17..457 | 2125 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 319445..319796 | 106..457 | 1745 | 99.7 | Plus |
| 4 | 1348131 | 4 | 316417..316509 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:15:56 has no hits.
BO12743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:44 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 1..444 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:24 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 253..706 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:33 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 282..722 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:44 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 253..706 | 9..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:05 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32850-RA | 282..722 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:05 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 316417..316509 | 17..109 | 100 | -> | Plus |
| 4 | 319449..319796 | 110..459 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:33 Download gff for
BO12743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 337043..337135 | 17..109 | 100 | -> | Plus |
| arm_4 | 340075..340422 | 110..459 | 99 | | Plus |
BO12743.pep Sequence
Translation from 16 to 475
> BO12743.pep
MGNCLKISTSDDISLLRGNDSQISGTQPVYHQGEHYQRELYPSTSSSTTL
TPSSNNRQLSDENQVKIAKRIGLMQYLPIGTYDGSSKKARECVICMAEFC
VNEAVRYLPCMHIYHVNCIDDWLLRSLTCPSCLEPVDAALLTSYESTASF
LDH
BO12743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32850-PA | 147 | CG32850-PA | 1..147 | 1..147 | 783 | 100 | Plus |
| CG32850-PB | 146 | CG32850-PB | 1..146 | 1..147 | 766 | 99.3 | Plus |
