Clone Sequence Records
BO12744.3prime Sequence
945 bp (830 high quality bases) assembled on 2006-05-09
> BO12744.3prime
ATGGTCTAGAAAGCTTGCCACAATATCGTCGGCCACCTGCGACTCCTGCT
CCAGTATCGTGCTCTCCCTCAGCTTGCTCTTCAGATTCTTGCTGGAGTTG
GCCTCCGTCAGGCAGGGCTCGTTTTCGTGATGGTCGTGCTCCTGACCATC
GGTGGGCCCATTGACATGGCCATCTTCCAGCTGCACCTTGCCCAGGTGAC
GACGATAGCGGTACCACACCTTTAGGCCAAGCACCAGCACAAAGTACAGG
AAGGCCAGGCAAATGATCACAATGATAATCCGGGTCACTATTGAATTGGA
CGCGGATTTACTTGACTTCAACACCAGCAGAACATCCTCTCGCTTCAAGC
CCGCACTGCTGCCAATGGTGCAGCCGTAGCGACCCTCATCCTCTGGCCGA
ACATTGCGTATCTCCAGAGTTCCGTTCTCCATTAGGGAAAAGCGTTCCGG
ATCCGTGTTATTCTCGTTCAAGTAGGTGAGATCCTTGTCCCATTGAATGG
TGGGTTTTGGCTCTCCGATTGCCTGGCAGTGGATCACGGCAGTTCCGGCT
TCTGCGACCTCGATGGGTCCCTCCGGCGGAACACTGAACTTCGGGGCCAC
CACCACATTGATGGACACGGTGGCCGTGATTTGACCCTGGCTATTGGAGG
CGATGCAGGTGTACTGACCCCGTTGCTCGTTGCTGACCTGGTTGAAAATC
AGCGTGCCATTCTGATCGGTTACGTTAACAGGGAGAGGTAGCTGGGTTTC
CCTCATCCATTTGACTTGTGGAGCAGGTGTTCCCTGCGCCTTGCAGTGGA
CCTTACTAAGAGTTCCCAACTCCAAGTTTTTGGAGGTTGGCTGTGGCACG
AACTTTAGTTGCTCAATAACCAGGAGCACCCCACTGCTGGAGCTGGCAGC
CACGGAGTCGTCGATGACCAACTGGCACTGATACTGACCGGCATC
BO12744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8964-PA | 1302 | CG8964-RA | 373..1299 | 945..19 | 4610 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otk2-RA | 1968 | CG8964-RA | 757..1683 | 945..19 | 4620 | 99.9 | Minus |
otk-RB | 4769 | CG8967-RB | 2250..2601 | 663..312 | 400 | 74.9 | Minus |
otk-RA | 4671 | CG8967-RA | 2250..2601 | 663..312 | 400 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12023431..12024163 | 19..751 | 3665 | 100 | Plus |
2R | 25286936 | 2R | 12024250..12024445 | 750..945 | 965 | 99.5 | Plus |
2R | 25286936 | 2R | 12003773..12004124 | 312..663 | 380 | 73.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:59:10 has no hits.
BO12744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:34 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-PA | 373..1302 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:28 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-PA | 373..1302 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:26:32 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 757..1683 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:08 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otk2-RA | 757..1683 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:08 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12023431..12024162 | 19..750 | 100 | <- | Plus |
2R | 12024251..12024445 | 751..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:26:32 Download gff for
BO12744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7910936..7911667 | 19..750 | 100 | <- | Plus |
arm_2R | 7911756..7911950 | 751..945 | 99 | | Plus |
BO12744.5prime Sequence
905 bp (846 high quality bases) assembled on 2006-05-08
> BO12744.5prime
GAAGTTATCAGTCGACATGGGGCTGAACGGAAGACGACGATTGTTGGGCT
GCGGCCTGGGATTCTTCTGCCTGATCTTCTGCTCTTACGCCGCGCCAGCA
TCATTTGAGGATGTGAGCATCTCAAGGGGTCCGAAATCCTCGATTACCAT
CAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGATG
GGTATCTTCAGAAGAGCAGCGTCATCCTGCGCTGGCGAAAGGATAGCAAA
ACGTTGCGTCAAGTAGAGCTGGGCAGGATGGACAGCACAACGAGCGAACC
ACAGCTGGAAACCATGCTGCGGGAGGATTCCCGTGTGGCGCTGAGCAAGG
ACAGTGGCGCCCTGCAATTCACAAGCGTGCTGGCCAGCGATGCCGGTCAG
TATCAGTGCCAGTTGGTCATCGACGACTCCGTGGCTGCCAGCTCCAGCAG
TGGGGTGCTCCTGGTTATTGAGCAACTAAAGTTCGTGCCACAGCCAACCT
CCAAAAACTTGGAGTTGGGAACTCTTAGTAAGGTCCACTGCAAGGCGCAG
GGAACACCTGCTCCACAAGTCAAATGGATGAGGGAAACCCAGCTACCTCT
CCCTGTTAACGTAACCGATCAGAATGGCACGCTGATTTTCAACCAGGTCA
GCAACGAGCAACGGGGTCAGTACACCTGCATCGCCTCCAATAGCCAGGGT
CAAATCACGGCCACCGTGTCCATCAATGTGGTGGTGGCCCCGAAGTTCAG
TGTTCCGCCGGAGGGACCCATCGAGGTCGCAGAAGCCGGAACTGCCGTGA
TCCACTGCCAGGCAATCGGAGAGCCAAAACCCACCATTCAATGGGACAAG
GATCTCACCTACTTGAACGAGAATAACACGGATCCGGAACGCTTTTCCCT
AATGG
BO12744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8964-PA | 1302 | CG8964-RA | 1..889 | 17..905 | 4420 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otk2-RA | 1968 | CG8964-RA | 380..1273 | 12..905 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12024250..12024745 | 584..89 | 2465 | 99.8 | Minus |
2R | 25286936 | 2R | 12023841..12024163 | 905..583 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 12024816..12024893 | 89..12 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:57:42 has no hits.
BO12744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:35 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:29 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:23 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 374..1273 | 5..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:22 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otk2-RA | 374..1273 | 5..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:22 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12023841..12024162 | 584..905 | 100 | <- | Minus |
2R | 12024251..12024744 | 90..583 | 99 | <- | Minus |
2R | 12024816..12024898 | 5..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:23 Download gff for
BO12744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7911346..7911667 | 584..905 | 100 | <- | Minus |
arm_2R | 7911756..7912249 | 90..583 | 99 | <- | Minus |
arm_2R | 7912321..7912403 | 5..89 | 95 | | Minus |
BO12744.complete Sequence
1333 bp assembled on 2006-10-11
GenBank Submission: FJ632545
> BO12744.complete
GAAGTTATCAGTCGACATGGGGCTGAACGGAAGACGACGATTGTTGGGCT
GCGGCCTGGGATTCTTCTGCCTGATCTTCTGCTCTTACGCCGCGCCAGCA
TCATTTGAGGATGTGAGCATCTCAAGGGGTCCGAAATCCTCGATTACCAT
CAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGATG
GGTATCTTCAGAAGAGCAGCGTCATCCTGCGCTGGCGAAAGGATAGCAAA
ACGTTGCGTCAAGTAGAGCTGGGCAGGATGGACAGCACAACGAGCGAACC
ACAGCTGGAAACCATGCTGCGGGAGGATTCCCGTGTGGCGCTGAGCAAGG
ACAGTGGCGCCCTGCAATTCACAAGCGTGCTGGCCAGCGATGCCGGTCAG
TATCAGTGCCAGTTGGTCATCGACGACTCCGTGGCTGCCAGCTCCAGCAG
TGGGGTGCTCCTGGTTATTGAGCAACTAAAGTTCGTGCCACAGCCAACCT
CCAAAAACTTGGAGTTGGGAACTCTTAGTAAGGTCCACTGCAAGGCGCAG
GGAACACCTGCTCCACAAGTCAAATGGATGAGGGAAACCCAGCTACCTCT
CCCTGTTAACGTAACCGATCAGAATGGCACGCTGATTTTCAACCAGGTCA
GCAACGAGCAACGGGGTCAGTACACCTGCATCGCCTCCAATAGCCAGGGT
CAAATCACGGCCACCGTGTCCATCAATGTGGTGGTGGCCCCGAAGTTCAG
TGTTCCGCCGGAGGGACCCATCGAGGTCGCAGAAGCCGGAACTGCCGTGA
TCCACTGCCAGGCAATCGGAGAGCCAAAACCCACCATTCAATGGGACAAG
GATCTCACCTACTTGAACGAGAATAACACGGATCCGGAACGCTTTTCCCT
AATGGAGAACGGAACTCTGGAGATACGCAATGTTCGGCCAGAGGATGAGG
GTCGCTACGGCTGCACCATTGGCAGCAGTGCGGGCTTGAAGCGAGAGGAT
GTTCTGCTGGTGTTGAAGTCAAGTAAATCCGCGTCCAATTCAATAGTGAC
CCGGATTATCATTGTGATCATTTGCCTGGCCTTCCTGTACTTTGTGCTGG
TGCTTGGCCTAAAGGTGTGGTACCGCTATCGTCGTCACCTGGGCAAGGTG
CAGCTGGAAGATGGCCATGTCAATGGGCCCACCGATGGTCAGGAGCACGA
CCATCACGAAAACGAGCCCTGCCTGACGGAGGCCAACTCCAGCAAGAATC
TGAAGAGCAAGCTGAGGGAGAGCACGATACTGGAGCAGGAGTCGCAGGTG
GCCGACGATATTGTGGCAAGCTTTCTAGACCAT
BO12744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otk2-RA | 1302 | CG8964-PA | 1..1299 | 17..1315 | 6480 | 99.9 | Plus |
otk-RB | 3060 | CG8967-PB | 1333..1684 | 671..1022 | 380 | 73.9 | Plus |
otk-RA | 3102 | CG8967-PA | 1333..1684 | 671..1022 | 380 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otk2-RA | 1968 | CG8964-RA | 380..1683 | 12..1315 | 6490 | 99.8 | Plus |
otk-RB | 4769 | CG8967-RB | 2250..2601 | 671..1022 | 380 | 73.9 | Plus |
otk-RA | 4671 | CG8967-RA | 2250..2601 | 671..1022 | 380 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12023431..12024163 | 1315..583 | 3665 | 100 | Minus |
2R | 25286936 | 2R | 12024250..12024745 | 584..89 | 2465 | 99.8 | Minus |
2R | 25286936 | 2R | 12003773..12004124 | 1022..671 | 380 | 73.9 | Minus |
2R | 25286936 | 2R | 12024816..12024893 | 89..12 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:02 has no hits.
BO12744.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:45 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 1..1302 | 17..1318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:26 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 372..1681 | 5..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:52 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 385..1683 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:45 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8964-RA | 372..1681 | 5..1315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:05 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
otk2-RA | 385..1683 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:05 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12023428..12024162 | 584..1317 | 99 | <- | Minus |
2R | 12024251..12024744 | 90..583 | 99 | <- | Minus |
2R | 12024816..12024888 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:52 Download gff for
BO12744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7910933..7911667 | 584..1317 | 99 | <- | Minus |
arm_2R | 7911756..7912249 | 90..583 | 99 | <- | Minus |
arm_2R | 7912321..7912393 | 17..89 | 100 | | Minus |
BO12744.pep Sequence
Translation from 16 to 1333
> BO12744.pep
MGLNGRRRLLGCGLGFFCLIFCSYAAPASFEDVSISRGPKSSITIKEQSS
LQLPCDYQLPDGYLQKSSVILRWRKDSKTLRQVELGRMDSTTSEPQLETM
LREDSRVALSKDSGALQFTSVLASDAGQYQCQLVIDDSVAASSSSGVLLV
IEQLKFVPQPTSKNLELGTLSKVHCKAQGTPAPQVKWMRETQLPLPVNVT
DQNGTLIFNQVSNEQRGQYTCIASNSQGQITATVSINVVVAPKFSVPPEG
PIEVAEAGTAVIHCQAIGEPKPTIQWDKDLTYLNENNTDPERFSLMENGT
LEIRNVRPEDEGRYGCTIGSSAGLKREDVLLVLKSSKSASNSIVTRIIIV
IICLAFLYFVLVLGLKVWYRYRRHLGKVQLEDGHVNGPTDGQEHDHHENE
PCLTEANSSKNLKSKLRESTILEQESQVADDIVASFLDH
BO12744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
otk2-PA | 433 | CG8964-PA | 1..433 | 1..433 | 2224 | 100 | Plus |
otk-PA | 1033 | CG8967-PA | 246..669 | 25..435 | 1067 | 53.4 | Plus |
otk-PB | 1019 | CG8967-PB | 246..669 | 25..435 | 1067 | 53.4 | Plus |
tutl-PH | 1533 | CG15427-PH | 373..657 | 37..337 | 246 | 26.8 | Plus |
tutl-PE | 902 | CG15427-PE | 350..632 | 39..337 | 244 | 26.7 | Plus |
tutl-PH | 1533 | CG15427-PH | 209..451 | 113..323 | 188 | 22.9 | Plus |