Clone BO12744 Report

Search the DGRC for BO12744

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG8964-RA
Protein status:BO12744.pep: validated full length
Sequenced Size:1333

Clone Sequence Records

BO12744.3prime Sequence

945 bp (830 high quality bases) assembled on 2006-05-09

> BO12744.3prime
ATGGTCTAGAAAGCTTGCCACAATATCGTCGGCCACCTGCGACTCCTGCT
CCAGTATCGTGCTCTCCCTCAGCTTGCTCTTCAGATTCTTGCTGGAGTTG
GCCTCCGTCAGGCAGGGCTCGTTTTCGTGATGGTCGTGCTCCTGACCATC
GGTGGGCCCATTGACATGGCCATCTTCCAGCTGCACCTTGCCCAGGTGAC
GACGATAGCGGTACCACACCTTTAGGCCAAGCACCAGCACAAAGTACAGG
AAGGCCAGGCAAATGATCACAATGATAATCCGGGTCACTATTGAATTGGA
CGCGGATTTACTTGACTTCAACACCAGCAGAACATCCTCTCGCTTCAAGC
CCGCACTGCTGCCAATGGTGCAGCCGTAGCGACCCTCATCCTCTGGCCGA
ACATTGCGTATCTCCAGAGTTCCGTTCTCCATTAGGGAAAAGCGTTCCGG
ATCCGTGTTATTCTCGTTCAAGTAGGTGAGATCCTTGTCCCATTGAATGG
TGGGTTTTGGCTCTCCGATTGCCTGGCAGTGGATCACGGCAGTTCCGGCT
TCTGCGACCTCGATGGGTCCCTCCGGCGGAACACTGAACTTCGGGGCCAC
CACCACATTGATGGACACGGTGGCCGTGATTTGACCCTGGCTATTGGAGG
CGATGCAGGTGTACTGACCCCGTTGCTCGTTGCTGACCTGGTTGAAAATC
AGCGTGCCATTCTGATCGGTTACGTTAACAGGGAGAGGTAGCTGGGTTTC
CCTCATCCATTTGACTTGTGGAGCAGGTGTTCCCTGCGCCTTGCAGTGGA
CCTTACTAAGAGTTCCCAACTCCAAGTTTTTGGAGGTTGGCTGTGGCACG
AACTTTAGTTGCTCAATAACCAGGAGCACCCCACTGCTGGAGCTGGCAGC
CACGGAGTCGTCGATGACCAACTGGCACTGATACTGACCGGCATC

BO12744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8964-PA 1302 CG8964-RA 373..1299 945..19 4610 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
otk2-RA 1968 CG8964-RA 757..1683 945..19 4620 99.9 Minus
otk-RB 4769 CG8967-RB 2250..2601 663..312 400 74.9 Minus
otk-RA 4671 CG8967-RA 2250..2601 663..312 400 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12023431..12024163 19..751 3665 100 Plus
2R 25286936 2R 12024250..12024445 750..945 965 99.5 Plus
2R 25286936 2R 12003773..12004124 312..663 380 73.9 Plus
Blast to na_te.dros performed on 2015-02-03 06:59:10 has no hits.

BO12744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:34 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-PA 373..1302 16..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:28 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-PA 373..1302 16..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:26:32 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 757..1683 19..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:08 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
otk2-RA 757..1683 19..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:08 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12023431..12024162 19..750 100 <- Plus
2R 12024251..12024445 751..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:26:32 Download gff for BO12744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7910936..7911667 19..750 100 <- Plus
arm_2R 7911756..7911950 751..945 99   Plus

BO12744.5prime Sequence

905 bp (846 high quality bases) assembled on 2006-05-08

> BO12744.5prime
GAAGTTATCAGTCGACATGGGGCTGAACGGAAGACGACGATTGTTGGGCT
GCGGCCTGGGATTCTTCTGCCTGATCTTCTGCTCTTACGCCGCGCCAGCA
TCATTTGAGGATGTGAGCATCTCAAGGGGTCCGAAATCCTCGATTACCAT
CAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGATG
GGTATCTTCAGAAGAGCAGCGTCATCCTGCGCTGGCGAAAGGATAGCAAA
ACGTTGCGTCAAGTAGAGCTGGGCAGGATGGACAGCACAACGAGCGAACC
ACAGCTGGAAACCATGCTGCGGGAGGATTCCCGTGTGGCGCTGAGCAAGG
ACAGTGGCGCCCTGCAATTCACAAGCGTGCTGGCCAGCGATGCCGGTCAG
TATCAGTGCCAGTTGGTCATCGACGACTCCGTGGCTGCCAGCTCCAGCAG
TGGGGTGCTCCTGGTTATTGAGCAACTAAAGTTCGTGCCACAGCCAACCT
CCAAAAACTTGGAGTTGGGAACTCTTAGTAAGGTCCACTGCAAGGCGCAG
GGAACACCTGCTCCACAAGTCAAATGGATGAGGGAAACCCAGCTACCTCT
CCCTGTTAACGTAACCGATCAGAATGGCACGCTGATTTTCAACCAGGTCA
GCAACGAGCAACGGGGTCAGTACACCTGCATCGCCTCCAATAGCCAGGGT
CAAATCACGGCCACCGTGTCCATCAATGTGGTGGTGGCCCCGAAGTTCAG
TGTTCCGCCGGAGGGACCCATCGAGGTCGCAGAAGCCGGAACTGCCGTGA
TCCACTGCCAGGCAATCGGAGAGCCAAAACCCACCATTCAATGGGACAAG
GATCTCACCTACTTGAACGAGAATAACACGGATCCGGAACGCTTTTCCCT
AATGG

BO12744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8964-PA 1302 CG8964-RA 1..889 17..905 4420 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
otk2-RA 1968 CG8964-RA 380..1273 12..905 4440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12024250..12024745 584..89 2465 99.8 Minus
2R 25286936 2R 12023841..12024163 905..583 1615 100 Minus
2R 25286936 2R 12024816..12024893 89..12 375 98.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:57:42 has no hits.

BO12744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:35 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:29 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:23 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 374..1273 5..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:22 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
otk2-RA 374..1273 5..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:22 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12023841..12024162 584..905 100 <- Minus
2R 12024251..12024744 90..583 99 <- Minus
2R 12024816..12024898 5..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:23 Download gff for BO12744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7911346..7911667 584..905 100 <- Minus
arm_2R 7911756..7912249 90..583 99 <- Minus
arm_2R 7912321..7912403 5..89 95   Minus

BO12744.complete Sequence

1333 bp assembled on 2006-10-11

GenBank Submission: FJ632545

> BO12744.complete
GAAGTTATCAGTCGACATGGGGCTGAACGGAAGACGACGATTGTTGGGCT
GCGGCCTGGGATTCTTCTGCCTGATCTTCTGCTCTTACGCCGCGCCAGCA
TCATTTGAGGATGTGAGCATCTCAAGGGGTCCGAAATCCTCGATTACCAT
CAAGGAACAAAGTTCGTTGCAATTGCCCTGTGACTACCAACTGCCGGATG
GGTATCTTCAGAAGAGCAGCGTCATCCTGCGCTGGCGAAAGGATAGCAAA
ACGTTGCGTCAAGTAGAGCTGGGCAGGATGGACAGCACAACGAGCGAACC
ACAGCTGGAAACCATGCTGCGGGAGGATTCCCGTGTGGCGCTGAGCAAGG
ACAGTGGCGCCCTGCAATTCACAAGCGTGCTGGCCAGCGATGCCGGTCAG
TATCAGTGCCAGTTGGTCATCGACGACTCCGTGGCTGCCAGCTCCAGCAG
TGGGGTGCTCCTGGTTATTGAGCAACTAAAGTTCGTGCCACAGCCAACCT
CCAAAAACTTGGAGTTGGGAACTCTTAGTAAGGTCCACTGCAAGGCGCAG
GGAACACCTGCTCCACAAGTCAAATGGATGAGGGAAACCCAGCTACCTCT
CCCTGTTAACGTAACCGATCAGAATGGCACGCTGATTTTCAACCAGGTCA
GCAACGAGCAACGGGGTCAGTACACCTGCATCGCCTCCAATAGCCAGGGT
CAAATCACGGCCACCGTGTCCATCAATGTGGTGGTGGCCCCGAAGTTCAG
TGTTCCGCCGGAGGGACCCATCGAGGTCGCAGAAGCCGGAACTGCCGTGA
TCCACTGCCAGGCAATCGGAGAGCCAAAACCCACCATTCAATGGGACAAG
GATCTCACCTACTTGAACGAGAATAACACGGATCCGGAACGCTTTTCCCT
AATGGAGAACGGAACTCTGGAGATACGCAATGTTCGGCCAGAGGATGAGG
GTCGCTACGGCTGCACCATTGGCAGCAGTGCGGGCTTGAAGCGAGAGGAT
GTTCTGCTGGTGTTGAAGTCAAGTAAATCCGCGTCCAATTCAATAGTGAC
CCGGATTATCATTGTGATCATTTGCCTGGCCTTCCTGTACTTTGTGCTGG
TGCTTGGCCTAAAGGTGTGGTACCGCTATCGTCGTCACCTGGGCAAGGTG
CAGCTGGAAGATGGCCATGTCAATGGGCCCACCGATGGTCAGGAGCACGA
CCATCACGAAAACGAGCCCTGCCTGACGGAGGCCAACTCCAGCAAGAATC
TGAAGAGCAAGCTGAGGGAGAGCACGATACTGGAGCAGGAGTCGCAGGTG
GCCGACGATATTGTGGCAAGCTTTCTAGACCAT

BO12744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
otk2-RA 1302 CG8964-PA 1..1299 17..1315 6480 99.9 Plus
otk-RB 3060 CG8967-PB 1333..1684 671..1022 380 73.9 Plus
otk-RA 3102 CG8967-PA 1333..1684 671..1022 380 73.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
otk2-RA 1968 CG8964-RA 380..1683 12..1315 6490 99.8 Plus
otk-RB 4769 CG8967-RB 2250..2601 671..1022 380 73.9 Plus
otk-RA 4671 CG8967-RA 2250..2601 671..1022 380 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12023431..12024163 1315..583 3665 100 Minus
2R 25286936 2R 12024250..12024745 584..89 2465 99.8 Minus
2R 25286936 2R 12003773..12004124 1022..671 380 73.9 Minus
2R 25286936 2R 12024816..12024893 89..12 375 98.7 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:02 has no hits.

BO12744.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:45 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 1..1302 17..1318 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:26 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 372..1681 5..1315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:52 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 385..1683 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:45 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
CG8964-RA 372..1681 5..1315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:05 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
otk2-RA 385..1683 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:05 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12023428..12024162 584..1317 99 <- Minus
2R 12024251..12024744 90..583 99 <- Minus
2R 12024816..12024888 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:52 Download gff for BO12744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7910933..7911667 584..1317 99 <- Minus
arm_2R 7911756..7912249 90..583 99 <- Minus
arm_2R 7912321..7912393 17..89 100   Minus

BO12744.pep Sequence

Translation from 16 to 1333

> BO12744.pep
MGLNGRRRLLGCGLGFFCLIFCSYAAPASFEDVSISRGPKSSITIKEQSS
LQLPCDYQLPDGYLQKSSVILRWRKDSKTLRQVELGRMDSTTSEPQLETM
LREDSRVALSKDSGALQFTSVLASDAGQYQCQLVIDDSVAASSSSGVLLV
IEQLKFVPQPTSKNLELGTLSKVHCKAQGTPAPQVKWMRETQLPLPVNVT
DQNGTLIFNQVSNEQRGQYTCIASNSQGQITATVSINVVVAPKFSVPPEG
PIEVAEAGTAVIHCQAIGEPKPTIQWDKDLTYLNENNTDPERFSLMENGT
LEIRNVRPEDEGRYGCTIGSSAGLKREDVLLVLKSSKSASNSIVTRIIIV
IICLAFLYFVLVLGLKVWYRYRRHLGKVQLEDGHVNGPTDGQEHDHHENE
PCLTEANSSKNLKSKLRESTILEQESQVADDIVASFLDH

BO12744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
otk2-PA 433 CG8964-PA 1..433 1..433 2224 100 Plus
otk-PA 1033 CG8967-PA 246..669 25..435 1067 53.4 Plus
otk-PB 1019 CG8967-PB 246..669 25..435 1067 53.4 Plus
tutl-PH 1533 CG15427-PH 373..657 37..337 246 26.8 Plus
tutl-PE 902 CG15427-PE 350..632 39..337 244 26.7 Plus
tutl-PH 1533 CG15427-PH 209..451 113..323 188 22.9 Plus