Clone Sequence Records
BO12747.3prime Sequence
929 bp (798 high quality bases) assembled on 2006-05-08
> BO12747.3prime
ATGGTCTAGAAAGCTTGCACGTGAGTTCTTGTTGAACTGATCGTAAAAGT
CATCGGAGACGGCATTGGTTAGGCCCACAAGGGCTTCCTTGCGCTGGCGA
TCCTGCTCCACGGCCAACTTGGAATTCGCCCGCATCAGCTCATCGAATTC
CGCCTTACGTCGGCGATCATCCTCGATTTGGTGAAGGACCAGGGTGCGGT
CCATATTAATGGAGTATTGCTCCCACTGTTTGTCCATCATCTGGGCCTCC
GTCTTGCGCTGAATAGACAAACGAAGCTGCTGATCTTGTCCAAGACGAAA
CACGCGAAGTTCTTCGGGCGTCATGCCGCGATACATGAAGGCAATCTTCT
TGTTCGGATCGGTGCGCGATTGAGCCACATCCGGATTTTCAGTTAGCATA
TCGCTGGAGAGCATGTTATAGATCTCGGCCATGTCATCCTCGTACTTTTC
ACGCTTTTCCCTTTCGCGGTCCAATTGCTTCTGCTTGGCCATGTTGATAT
TGAACTGACGCACTCGCTGGATGACTTGGTTGCGCATCTGGTGATCAGAC
TTGGCCATCTCCTGCAGATGCTTGTCTCTGCAACCAACGTTGTCCATCAA
CACATTATCGGCCTGCTTGCGAGCATCCTCCGCCCTCTTACGCTCCTGCA
CTTGCTGATCCAGCCAGGCTCTTTGCTGCTCCCGCTGCCGCTGCTTTCTG
TCAGAGTTATAGAGGTCCTCGCCTTGAAAGATCTGGGCACTGGACACGCC
CAGCGAAATGTCATTGTCGGCGACTCTTGTTGGACGTGCCTTCTTCAAGA
AATTCGGATCATTTAGGTCGAATTCGCGGCGCTGCTCCTTGCGCTGATAG
CGGCAGCGATAATAGTTAAGATCCGAGTCCACCACACGCTGTTTTTTCTC
CAACTCCATTTCCTGGGCCAGGATCAGAC
BO12747.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-PA | 1146 | CG7264-RA | 233..1143 | 929..19 | 4555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-RB | 1412 | CG7264-RB | 291..1201 | 929..19 | 4555 | 100 | Minus |
CG7264-RA | 1700 | CG7264-RA | 579..1489 | 929..19 | 4555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11829723..11830633 | 929..19 | 4555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:06:12 has no hits.
BO12747.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:40 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-PA | 233..1146 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:36 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-PA | 233..1146 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:58 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 579..1489 | 19..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:55 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 579..1489 | 19..929 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:55 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11829723..11830633 | 19..929 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:58 Download gff for
BO12747.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11822823..11823733 | 19..929 | 100 | | Minus |
BO12747.5prime Sequence
899 bp (818 high quality bases) assembled on 2006-05-08
> BO12747.5prime
GAAGTTATCAGTCGACATGACGCTCAAAATCGGTATATGCACCAAGCAGG
ATCTCGACGAGGCGATGAAGCTGCAGAAGCGGGAGCAGTACGAAGATGAG
CGGAAGCGGCGCATTTTTAATGCCAAACAGCGTCTTTACGGGCTCGACCT
AGAAATGCTGGATCGCCAAATACTTGAGAAAAAGAAGCAGCGAACCGCCC
AGATGGAGTGCGACAAGAAATTTGAAGAACAGGAGCAGCTGCAGAAGCGT
CTGATCCTGGCCCAGGAAATGGAGTTGGAGAAAAAACAGCGTGTGGTGGA
CTCGGATCTTAACTATTATCGCTGCCGCTATCAGCGCAAGGAGCAGCGCC
GCGAATTCGACCTAAATGATCCGAATTTCTTGAAGAAGGCACGTCCAACA
AGAGTCGCCGACAATGACATTTCGCTGGGCGTGTCCAGTGCCCAGATCTT
TCAAGGCGAGGACCTCTATAACTCTGACAGAAAGCAGCGGCAGCGGGAGC
AGCAAAGAGCCTGGCTGGATCAGCAAGTGCAGGAGCGTAAGAGGGCGGAG
GATGCTCGCAAGCAGGCCGATAATGTGTTGATGGACAACGTTGGTTGCAG
AGACAAGCATCTGCAGGAGATGGCCAAGTCTGATCACCAGATGCGCAACC
AAGTCATCCAGCGAGTGCGTCAGTTCAATATCAACATGGCCAAGCAGAAG
CAATTGGACCGCGAAAGGGAAAAGCGTGAAAAGTACGAGGATGACATGGC
CGAGATCTATAACATGCTCTCCAGCGATATGCTAACTGAAAATCCGGATG
TGGCTCAATCGCGCACCGATCCGAAACAGAAGATTGCCTTCATGTATCGC
GGCATGACGCCCGAAGAACTTCGCGTGTTTCGTCTTGGACAAGATCAGC
BO12747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-PA | 1146 | CG7264-RA | 1..883 | 17..899 | 4365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-RB | 1412 | CG7264-RB | 59..941 | 17..899 | 4385 | 99.8 | Plus |
CG7264-RA | 1700 | CG7264-RA | 347..1229 | 17..899 | 4385 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11829616..11830373 | 142..899 | 3760 | 99.7 | Plus |
3L | 28110227 | 3L | 11829435..11829560 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:31 has no hits.
BO12747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:41 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:37 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:02 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 338..1229 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:06 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 338..1229 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:06 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11829426..11829560 | 8..142 | 97 | -> | Plus |
3L | 11829617..11830373 | 143..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:02 Download gff for
BO12747.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11822526..11822660 | 8..142 | 97 | -> | Plus |
arm_3L | 11822717..11823473 | 143..899 | 99 | | Plus |
BO12747.complete Sequence
1177 bp assembled on 2006-10-11
GenBank Submission: FJ632546
> BO12747.complete
GAAGTTATCAGTCGACATGACGCTCAAAATCGGTATATGCACCAAGCAGG
ATCTCGACGAGGCGATGAAGCTGCAGAAGCGGGAGCAGTACGAAGATGAG
CGGAAGCGGCGCATTTTTAATGCCAAACAGCGTCTTTACGGGCTCGACCT
AGAAATGCTGGATCGCCAAATACTTGAGAAAAAGAAGCAGCGAACCGCCC
AGATGGAGTGCGACAAGAAATTTGAAGAACAGGAGCAGCTGCAGAAGCGT
CTGATCCTGGCCCAGGAAATGGAGTTGGAGAAAAAACAGCGTGTGGTGGA
CTCGGATCTTAACTATTATCGCTGCCGCTATCAGCGCAAGGAGCAGCGCC
GCGAATTCGACCTAAATGATCCGAATTTCTTGAAGAAGGCACGTCCAACA
AGAGTCGCCGACAATGACATTTCGCTGGGCGTGTCCAGTGCCCAGATCTT
TCAAGGCGAGGACCTCTATAACTCTGACAGAAAGCAGCGGCAGCGGGAGC
AGCAAAGAGCCTGGCTGGATCAGCAAGTGCAGGAGCGTAAGAGGGCGGAG
GATGCTCGCAAGCAGGCCGATAATGTGTTGATGGACAACGTTGGTTGCAG
AGACAAGCATCTGCAGGAGATGGCCAAGTCTGATCACCAGATGCGCAACC
AAGTCATCCAGCGAGTGCGTCAGTTCAATATCAACATGGCCAAGCAGAAG
CAATTGGACCGCGAAAGGGAAAAGCGTGAAAAGTACGAGGATGACATGGC
CGAGATCTATAACATGCTCTCCAGCGATATGCTAACTGAAAATCCGGATG
TGGCTCAATCGCGCACCGATCCGAACAAGAAGATTGCCTTCATGTATCGC
GGCATGACGCCCGAAGAACTTCGCGTGTTTCGTCTTGGACAAGATCAGCA
GCTTCGTTTGTCTATTCAGCGCAAGACGGAGGCCCAGATGATGGACAAAC
AGTGGGAGCAATACTCCATTAATATGGACCGCACCCTGGTCCTTCACCAA
ATCGAGGATGATCGCCGACGTAAGGCGGAATTCGATGAGCTGATGCGGGC
GAATTCCAAGTTGGCCGTGGAGCAGGATCGCCAGCGCAAGGAAGCCCTTG
TGGGCCTAACCAATGCCGTCTCCGATGACTTTTACGATCAGTTCAACAAG
AACTCACGTGCAAGCTTTCTAGACCAT
BO12747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-RB | 1146 | CG7264-PB | 1..1143 | 17..1159 | 5715 | 100 | Plus |
CG7264-RA | 1146 | CG7264-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-RB | 1412 | CG7264-RB | 59..1201 | 17..1159 | 5715 | 100 | Plus |
CG7264-RA | 1700 | CG7264-RA | 347..1489 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11829616..11830633 | 142..1159 | 5090 | 100 | Plus |
3L | 28110227 | 3L | 11829435..11829560 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:41:58 has no hits.
BO12747.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:46 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 1..1146 | 17..1160 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:28 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 338..1489 | 8..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:27 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 347..1489 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:46 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 338..1489 | 8..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:25 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7264-RA | 347..1489 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:25 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11829435..11829560 | 17..142 | 100 | -> | Plus |
3L | 11829617..11830633 | 143..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:27 Download gff for
BO12747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11822535..11822660 | 17..142 | 100 | -> | Plus |
arm_3L | 11822717..11823733 | 143..1161 | 99 | | Plus |
BO12747.pep Sequence
Translation from 16 to 1177
> BO12747.pep
MTLKIGICTKQDLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDR
QILEKKKQRTAQMECDKKFEEQEQLQKRLILAQEMELEKKQRVVDSDLNY
YRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDL
YNSDRKQRQREQQRAWLDQQVQERKRAEDARKQADNVLMDNVGCRDKHLQ
EMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDDMAEIYNM
LSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPEELRVFRLGQDQQLRLSI
QRKTEAQMMDKQWEQYSINMDRTLVLHQIEDDRRRKAEFDELMRANSKLA
VEQDRQRKEALVGLTNAVSDDFYDQFNKNSRASFLDH
BO12747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7264-PB | 381 | CG7264-PB | 1..381 | 1..381 | 1950 | 100 | Plus |
CG7264-PA | 381 | CG7264-PA | 1..381 | 1..381 | 1950 | 100 | Plus |