Clone BO12747 Report

Search the DGRC for BO12747

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG7264-RA
Protein status:BO12747.pep: validated full length
Sequenced Size:1177

Clone Sequence Records

BO12747.3prime Sequence

929 bp (798 high quality bases) assembled on 2006-05-08

> BO12747.3prime
ATGGTCTAGAAAGCTTGCACGTGAGTTCTTGTTGAACTGATCGTAAAAGT
CATCGGAGACGGCATTGGTTAGGCCCACAAGGGCTTCCTTGCGCTGGCGA
TCCTGCTCCACGGCCAACTTGGAATTCGCCCGCATCAGCTCATCGAATTC
CGCCTTACGTCGGCGATCATCCTCGATTTGGTGAAGGACCAGGGTGCGGT
CCATATTAATGGAGTATTGCTCCCACTGTTTGTCCATCATCTGGGCCTCC
GTCTTGCGCTGAATAGACAAACGAAGCTGCTGATCTTGTCCAAGACGAAA
CACGCGAAGTTCTTCGGGCGTCATGCCGCGATACATGAAGGCAATCTTCT
TGTTCGGATCGGTGCGCGATTGAGCCACATCCGGATTTTCAGTTAGCATA
TCGCTGGAGAGCATGTTATAGATCTCGGCCATGTCATCCTCGTACTTTTC
ACGCTTTTCCCTTTCGCGGTCCAATTGCTTCTGCTTGGCCATGTTGATAT
TGAACTGACGCACTCGCTGGATGACTTGGTTGCGCATCTGGTGATCAGAC
TTGGCCATCTCCTGCAGATGCTTGTCTCTGCAACCAACGTTGTCCATCAA
CACATTATCGGCCTGCTTGCGAGCATCCTCCGCCCTCTTACGCTCCTGCA
CTTGCTGATCCAGCCAGGCTCTTTGCTGCTCCCGCTGCCGCTGCTTTCTG
TCAGAGTTATAGAGGTCCTCGCCTTGAAAGATCTGGGCACTGGACACGCC
CAGCGAAATGTCATTGTCGGCGACTCTTGTTGGACGTGCCTTCTTCAAGA
AATTCGGATCATTTAGGTCGAATTCGCGGCGCTGCTCCTTGCGCTGATAG
CGGCAGCGATAATAGTTAAGATCCGAGTCCACCACACGCTGTTTTTTCTC
CAACTCCATTTCCTGGGCCAGGATCAGAC

BO12747.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-PA 1146 CG7264-RA 233..1143 929..19 4555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-RB 1412 CG7264-RB 291..1201 929..19 4555 100 Minus
CG7264-RA 1700 CG7264-RA 579..1489 929..19 4555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11829723..11830633 929..19 4555 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:06:12 has no hits.

BO12747.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:40 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-PA 233..1146 18..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:36 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-PA 233..1146 18..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:58 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 579..1489 19..929 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:55 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 579..1489 19..929 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:55 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11829723..11830633 19..929 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:58 Download gff for BO12747.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11822823..11823733 19..929 100   Minus

BO12747.5prime Sequence

899 bp (818 high quality bases) assembled on 2006-05-08

> BO12747.5prime
GAAGTTATCAGTCGACATGACGCTCAAAATCGGTATATGCACCAAGCAGG
ATCTCGACGAGGCGATGAAGCTGCAGAAGCGGGAGCAGTACGAAGATGAG
CGGAAGCGGCGCATTTTTAATGCCAAACAGCGTCTTTACGGGCTCGACCT
AGAAATGCTGGATCGCCAAATACTTGAGAAAAAGAAGCAGCGAACCGCCC
AGATGGAGTGCGACAAGAAATTTGAAGAACAGGAGCAGCTGCAGAAGCGT
CTGATCCTGGCCCAGGAAATGGAGTTGGAGAAAAAACAGCGTGTGGTGGA
CTCGGATCTTAACTATTATCGCTGCCGCTATCAGCGCAAGGAGCAGCGCC
GCGAATTCGACCTAAATGATCCGAATTTCTTGAAGAAGGCACGTCCAACA
AGAGTCGCCGACAATGACATTTCGCTGGGCGTGTCCAGTGCCCAGATCTT
TCAAGGCGAGGACCTCTATAACTCTGACAGAAAGCAGCGGCAGCGGGAGC
AGCAAAGAGCCTGGCTGGATCAGCAAGTGCAGGAGCGTAAGAGGGCGGAG
GATGCTCGCAAGCAGGCCGATAATGTGTTGATGGACAACGTTGGTTGCAG
AGACAAGCATCTGCAGGAGATGGCCAAGTCTGATCACCAGATGCGCAACC
AAGTCATCCAGCGAGTGCGTCAGTTCAATATCAACATGGCCAAGCAGAAG
CAATTGGACCGCGAAAGGGAAAAGCGTGAAAAGTACGAGGATGACATGGC
CGAGATCTATAACATGCTCTCCAGCGATATGCTAACTGAAAATCCGGATG
TGGCTCAATCGCGCACCGATCCGAAACAGAAGATTGCCTTCATGTATCGC
GGCATGACGCCCGAAGAACTTCGCGTGTTTCGTCTTGGACAAGATCAGC

BO12747.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-PA 1146 CG7264-RA 1..883 17..899 4365 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-RB 1412 CG7264-RB 59..941 17..899 4385 99.8 Plus
CG7264-RA 1700 CG7264-RA 347..1229 17..899 4385 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11829616..11830373 142..899 3760 99.7 Plus
3L 28110227 3L 11829435..11829560 17..142 630 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:27:31 has no hits.

BO12747.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:41 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:37 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:02 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 338..1229 8..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:06 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 338..1229 8..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:06 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11829426..11829560 8..142 97 -> Plus
3L 11829617..11830373 143..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:02 Download gff for BO12747.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11822526..11822660 8..142 97 -> Plus
arm_3L 11822717..11823473 143..899 99   Plus

BO12747.complete Sequence

1177 bp assembled on 2006-10-11

GenBank Submission: FJ632546

> BO12747.complete
GAAGTTATCAGTCGACATGACGCTCAAAATCGGTATATGCACCAAGCAGG
ATCTCGACGAGGCGATGAAGCTGCAGAAGCGGGAGCAGTACGAAGATGAG
CGGAAGCGGCGCATTTTTAATGCCAAACAGCGTCTTTACGGGCTCGACCT
AGAAATGCTGGATCGCCAAATACTTGAGAAAAAGAAGCAGCGAACCGCCC
AGATGGAGTGCGACAAGAAATTTGAAGAACAGGAGCAGCTGCAGAAGCGT
CTGATCCTGGCCCAGGAAATGGAGTTGGAGAAAAAACAGCGTGTGGTGGA
CTCGGATCTTAACTATTATCGCTGCCGCTATCAGCGCAAGGAGCAGCGCC
GCGAATTCGACCTAAATGATCCGAATTTCTTGAAGAAGGCACGTCCAACA
AGAGTCGCCGACAATGACATTTCGCTGGGCGTGTCCAGTGCCCAGATCTT
TCAAGGCGAGGACCTCTATAACTCTGACAGAAAGCAGCGGCAGCGGGAGC
AGCAAAGAGCCTGGCTGGATCAGCAAGTGCAGGAGCGTAAGAGGGCGGAG
GATGCTCGCAAGCAGGCCGATAATGTGTTGATGGACAACGTTGGTTGCAG
AGACAAGCATCTGCAGGAGATGGCCAAGTCTGATCACCAGATGCGCAACC
AAGTCATCCAGCGAGTGCGTCAGTTCAATATCAACATGGCCAAGCAGAAG
CAATTGGACCGCGAAAGGGAAAAGCGTGAAAAGTACGAGGATGACATGGC
CGAGATCTATAACATGCTCTCCAGCGATATGCTAACTGAAAATCCGGATG
TGGCTCAATCGCGCACCGATCCGAACAAGAAGATTGCCTTCATGTATCGC
GGCATGACGCCCGAAGAACTTCGCGTGTTTCGTCTTGGACAAGATCAGCA
GCTTCGTTTGTCTATTCAGCGCAAGACGGAGGCCCAGATGATGGACAAAC
AGTGGGAGCAATACTCCATTAATATGGACCGCACCCTGGTCCTTCACCAA
ATCGAGGATGATCGCCGACGTAAGGCGGAATTCGATGAGCTGATGCGGGC
GAATTCCAAGTTGGCCGTGGAGCAGGATCGCCAGCGCAAGGAAGCCCTTG
TGGGCCTAACCAATGCCGTCTCCGATGACTTTTACGATCAGTTCAACAAG
AACTCACGTGCAAGCTTTCTAGACCAT

BO12747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-RB 1146 CG7264-PB 1..1143 17..1159 5715 100 Plus
CG7264-RA 1146 CG7264-PA 1..1143 17..1159 5715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-RB 1412 CG7264-RB 59..1201 17..1159 5715 100 Plus
CG7264-RA 1700 CG7264-RA 347..1489 17..1159 5715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11829616..11830633 142..1159 5090 100 Plus
3L 28110227 3L 11829435..11829560 17..142 630 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:41:58 has no hits.

BO12747.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:46 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 1..1146 17..1160 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:28 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 338..1489 8..1159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:27 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 347..1489 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:46 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 338..1489 8..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:25 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
CG7264-RA 347..1489 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:25 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11829435..11829560 17..142 100 -> Plus
3L 11829617..11830633 143..1161 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:27 Download gff for BO12747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11822535..11822660 17..142 100 -> Plus
arm_3L 11822717..11823733 143..1161 99   Plus

BO12747.pep Sequence

Translation from 16 to 1177

> BO12747.pep
MTLKIGICTKQDLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDR
QILEKKKQRTAQMECDKKFEEQEQLQKRLILAQEMELEKKQRVVDSDLNY
YRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDL
YNSDRKQRQREQQRAWLDQQVQERKRAEDARKQADNVLMDNVGCRDKHLQ
EMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDDMAEIYNM
LSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPEELRVFRLGQDQQLRLSI
QRKTEAQMMDKQWEQYSINMDRTLVLHQIEDDRRRKAEFDELMRANSKLA
VEQDRQRKEALVGLTNAVSDDFYDQFNKNSRASFLDH

BO12747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7264-PB 381 CG7264-PB 1..381 1..381 1950 100 Plus
CG7264-PA 381 CG7264-PA 1..381 1..381 1950 100 Plus