Clone Sequence Records
BO12748.3prime Sequence
921 bp (789 high quality bases) assembled on 2006-05-08
> BO12748.3prime
ATGGTCTAGAAAGCTTGCGCGGCTGACAGAAACTGCCGATCCATGGCTAC
TGCCACGATTGGCTCCTCCATTAGCGAAGCTGTTCGTGGAGCTAAAGTTT
ATTGTCTGTCCATTGGGAAGATGGTAAACCTGACTCAGCGAAGCACCTGC
CGCATTATTGGATCCAAAGGGGCTGGTGTTCTGGGACTGAGTGGCCGTGC
TTGCGGAGGAGGCACCGAATGATCCATTGGCACTCTGCGACTGGAAGCCC
TGAGCCTGCCCACTGGCGGCCGAGGATCCTGAGTTGAGTCCATTGTTGTA
GTTGCTGTGGGCAGCTCCGTTGGATGCGGCCTGCTCCTGGTTGTAACCAC
TGGGTCCGAGTGGTCCCAGCGGATTTAACTCGACGTTGGCATTGGCATTG
CCGCCATCTGGTCCGGCACCAACATCAACACCCGCTTTGGTTCCCCCAGC
GCCGGCCGATGTACCTGCCTGAACTTTTCCACCTTGATTACCGCCGAATC
CGGGATTTCCTCCGAATCCTGGGTTACCGCCGAATTCCTGATTACCGCCG
AAACCCTGATTACCTCCGAATCCCTGGTTGCCTCCAAATCCTTGATTACC
GCCGAATCCACCTCCAAAACCAGGCTCTCCACCGAATCCGCCACCGAAGC
CGGGATTTCCAGCATACTGACCACCAAATTGTCGCCCAAACTGACGCTTC
ACCCTCTTGTGAGCGGCCTGGATTCCGGATATTTGATCCAGGACCGAACG
GACGCGACGCACCTGCGGATTAGACTTCGGTTTGATGTACAAGGCTGATT
CCACCACTACTCCCTCGATAGTGGCGCCCTTGGAAGGCAAATCATCATCG
CCGGTTTGAACCTGCTTCTCGTTGCGCTGCCTCAGTTGAGGAAACGCCGA
CGCAGCTGCCAGACAGATGAG
BO12748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-PA | 939 | CG17032-RA | 34..936 | 921..19 | 4490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-RB | 1127 | CG17032-RB | 121..1023 | 921..19 | 4500 | 99.9 | Minus |
CG17032-RA | 1463 | CG17032-RA | 457..1359 | 921..19 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15959688..15960505 | 836..19 | 4075 | 99.9 | Minus |
3L | 28110227 | 3L | 15959299..15959383 | 921..837 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:04:05 has no hits.
BO12748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:42 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-PA | 34..939 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:39 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-PA | 34..939 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:33 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 457..1362 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:18 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 457..1362 | 15..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:18 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15959299..15959383 | 837..921 | 100 | -> | Minus |
3L | 15959688..15960508 | 15..836 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:33 Download gff for
BO12748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15952399..15952483 | 837..921 | 100 | -> | Minus |
arm_3L | 15952788..15953608 | 15..836 | 99 | | Minus |
BO12748.5prime Sequence
905 bp (797 high quality bases) assembled on 2006-05-08
> BO12748.5prime
GAAGTTATCAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCC
TCATCTGTCTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAAC
GAGAAGCAGGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCAC
TATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTA
ATCCGCAGGTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATC
CAGGCCGCTCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGG
TCAGTATGCTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTG
GTTTTGGAGGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGA
TTCGGAGGTAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCC
AGGATTCGGAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTC
AGGCAGGTACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTT
GGTGCCGGACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCC
GCTGGGACCACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCA
ACGGAGCTGCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCG
GCCGCCAGTGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATC
ATTCGGTGCCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCC
CCTTTGGATCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGGTTTACCAT
CTTCCCAATGGACAGACAATAAACTTTAGCTCCACGAACAGCTTCGCTAA
TGGAG
BO12748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-PA | 939 | CG17032-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-RB | 1127 | CG17032-RB | 84..976 | 13..905 | 4450 | 99.9 | Plus |
CG17032-RA | 1463 | CG17032-RA | 420..1312 | 13..905 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15959688..15960458 | 135..905 | 3855 | 100 | Plus |
3L | 28110227 | 3L | 15959262..15959383 | 13..134 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:27:21 has no hits.
BO12748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:43 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:40 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-PA | 1..889 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:00 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 418..1312 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:04 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 418..1312 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:04 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15959260..15959383 | 9..134 | 97 | -> | Plus |
3L | 15959688..15960458 | 135..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:00 Download gff for
BO12748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15952360..15952483 | 9..134 | 97 | -> | Plus |
arm_3L | 15952788..15953558 | 135..905 | 100 | | Plus |
BO12748.complete Sequence
970 bp assembled on 2006-10-11
GenBank Submission: FJ632547
> BO12748.complete
GAAGTTATCAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCC
TCATCTGTCTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAAC
GAGAAGCAGGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCAC
TATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTA
ATCCGCAGGTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATC
CAGGCCGCTCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGG
TCAGTATGCTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTG
GTTTTGGAGGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGA
TTCGGAGGTAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCC
AGGATTCGGAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTC
AGGCAGGTACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTT
GGTGCCGGACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCC
GCTGGGACCACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCA
ACGGAGCTGCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCG
GCCGCCAGTGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATC
ATTCGGTGCCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCC
CCTTTGGATCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGGTTTACCAT
CTTCCCAATGGACAGACAATAAACTTTAGCTCCACGAACAGCTTCGCTAA
TGGAGGAGCCAATCGTGGCAGTAGCCATGGATCGGCAGTTTCTGTCAGCC
GCGCAAGCTTTCTAGACCAT
BO12748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-RB | 939 | CG17032-PB | 1..936 | 17..952 | 4680 | 100 | Plus |
CG17032-RA | 939 | CG17032-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-RB | 1127 | CG17032-RB | 84..1023 | 13..952 | 4685 | 99.9 | Plus |
CG17032-RA | 1463 | CG17032-RA | 420..1359 | 13..952 | 4685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15959688..15960505 | 135..952 | 4090 | 100 | Plus |
3L | 28110227 | 3L | 15959262..15959383 | 13..134 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:29:42 has no hits.
BO12748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:50 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:20 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 418..1362 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:22 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 424..1359 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:50 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 418..1362 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:31 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17032-RA | 424..1359 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:31 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15959266..15959383 | 17..134 | 100 | -> | Plus |
3L | 15959688..15960505 | 135..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:22 Download gff for
BO12748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15952366..15952483 | 17..134 | 100 | -> | Plus |
arm_3L | 15952788..15953605 | 135..954 | 99 | | Plus |
BO12748.pep Sequence
Translation from 16 to 970
> BO12748.pep
MNVSIPVLFVALICLAAASAFPQLRQRNEKQVQTGDDDLPSKGATIEEVV
VESALYIKPKSNPQVRRVRSVLDQISGIQAAHKRVKRQFGRQFGGQYAGN
PGFGGGFGGEPGFGGGFGGNQGFGGNQGFGGNQGFGGNQEFGGNPGFGGN
PGFGGNQGGKVQAGTSAGAGGTKAGVDVGAGPDGGNANANVELNPLGPLG
PSGYNQEQAASNGAAHSNYNNGLNSGSSAASGQAQGFQSQSANGSFGASS
ASTATQSQNTSPFGSNNAAGASLSQVYHLPNGQTINFSSTNSFANGGANR
GSSHGSAVSVSRASFLDH
BO12748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17032-PB | 312 | CG17032-PB | 1..312 | 1..312 | 1629 | 100 | Plus |
CG17032-PA | 312 | CG17032-PA | 1..312 | 1..312 | 1629 | 100 | Plus |
CG7296-PB | 161 | CG7296-PB | 36..160 | 95..216 | 279 | 47.6 | Plus |
CG7296-PA | 161 | CG7296-PA | 36..160 | 95..216 | 279 | 47.6 | Plus |
CG7296-PB | 161 | CG7296-PB | 47..156 | 90..197 | 260 | 51.8 | Plus |
CG7296-PA | 161 | CG7296-PA | 47..156 | 90..197 | 260 | 51.8 | Plus |
CG7296-PB | 161 | CG7296-PB | 19..157 | 88..247 | 251 | 38.1 | Plus |
CG7296-PA | 161 | CG7296-PA | 19..157 | 88..247 | 251 | 38.1 | Plus |
CG7299-PC | 177 | CG7299-PC | 54..173 | 93..211 | 219 | 43.9 | Plus |