Clone BO12748 Report

Search the DGRC for BO12748

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17032-RA
Protein status:BO12748.pep: validated full length
Sequenced Size:970

Clone Sequence Records

BO12748.3prime Sequence

921 bp (789 high quality bases) assembled on 2006-05-08

> BO12748.3prime
ATGGTCTAGAAAGCTTGCGCGGCTGACAGAAACTGCCGATCCATGGCTAC
TGCCACGATTGGCTCCTCCATTAGCGAAGCTGTTCGTGGAGCTAAAGTTT
ATTGTCTGTCCATTGGGAAGATGGTAAACCTGACTCAGCGAAGCACCTGC
CGCATTATTGGATCCAAAGGGGCTGGTGTTCTGGGACTGAGTGGCCGTGC
TTGCGGAGGAGGCACCGAATGATCCATTGGCACTCTGCGACTGGAAGCCC
TGAGCCTGCCCACTGGCGGCCGAGGATCCTGAGTTGAGTCCATTGTTGTA
GTTGCTGTGGGCAGCTCCGTTGGATGCGGCCTGCTCCTGGTTGTAACCAC
TGGGTCCGAGTGGTCCCAGCGGATTTAACTCGACGTTGGCATTGGCATTG
CCGCCATCTGGTCCGGCACCAACATCAACACCCGCTTTGGTTCCCCCAGC
GCCGGCCGATGTACCTGCCTGAACTTTTCCACCTTGATTACCGCCGAATC
CGGGATTTCCTCCGAATCCTGGGTTACCGCCGAATTCCTGATTACCGCCG
AAACCCTGATTACCTCCGAATCCCTGGTTGCCTCCAAATCCTTGATTACC
GCCGAATCCACCTCCAAAACCAGGCTCTCCACCGAATCCGCCACCGAAGC
CGGGATTTCCAGCATACTGACCACCAAATTGTCGCCCAAACTGACGCTTC
ACCCTCTTGTGAGCGGCCTGGATTCCGGATATTTGATCCAGGACCGAACG
GACGCGACGCACCTGCGGATTAGACTTCGGTTTGATGTACAAGGCTGATT
CCACCACTACTCCCTCGATAGTGGCGCCCTTGGAAGGCAAATCATCATCG
CCGGTTTGAACCTGCTTCTCGTTGCGCTGCCTCAGTTGAGGAAACGCCGA
CGCAGCTGCCAGACAGATGAG

BO12748.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-PA 939 CG17032-RA 34..936 921..19 4490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-RB 1127 CG17032-RB 121..1023 921..19 4500 99.9 Minus
CG17032-RA 1463 CG17032-RA 457..1359 921..19 4500 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15959688..15960505 836..19 4075 99.9 Minus
3L 28110227 3L 15959299..15959383 921..837 425 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:04:05 has no hits.

BO12748.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:42 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-PA 34..939 15..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:39 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-PA 34..939 15..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:33 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 457..1362 15..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:18 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 457..1362 15..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:18 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15959299..15959383 837..921 100 -> Minus
3L 15959688..15960508 15..836 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:33 Download gff for BO12748.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15952399..15952483 837..921 100 -> Minus
arm_3L 15952788..15953608 15..836 99   Minus

BO12748.5prime Sequence

905 bp (797 high quality bases) assembled on 2006-05-08

> BO12748.5prime
GAAGTTATCAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCC
TCATCTGTCTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAAC
GAGAAGCAGGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCAC
TATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTA
ATCCGCAGGTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATC
CAGGCCGCTCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGG
TCAGTATGCTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTG
GTTTTGGAGGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGA
TTCGGAGGTAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCC
AGGATTCGGAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTC
AGGCAGGTACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTT
GGTGCCGGACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCC
GCTGGGACCACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCA
ACGGAGCTGCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCG
GCCGCCAGTGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATC
ATTCGGTGCCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCC
CCTTTGGATCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGGTTTACCAT
CTTCCCAATGGACAGACAATAAACTTTAGCTCCACGAACAGCTTCGCTAA
TGGAG

BO12748.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-PA 939 CG17032-RA 1..889 17..905 4445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-RB 1127 CG17032-RB 84..976 13..905 4450 99.9 Plus
CG17032-RA 1463 CG17032-RA 420..1312 13..905 4450 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15959688..15960458 135..905 3855 100 Plus
3L 28110227 3L 15959262..15959383 13..134 595 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:27:21 has no hits.

BO12748.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:43 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:40 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-PA 1..889 17..905 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:00 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 418..1312 9..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:04 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 418..1312 9..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:04 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15959260..15959383 9..134 97 -> Plus
3L 15959688..15960458 135..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:00 Download gff for BO12748.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15952360..15952483 9..134 97 -> Plus
arm_3L 15952788..15953558 135..905 100   Plus

BO12748.complete Sequence

970 bp assembled on 2006-10-11

GenBank Submission: FJ632547

> BO12748.complete
GAAGTTATCAGTCGACATGAATGTATCAATTCCGGTGCTATTTGTGGCCC
TCATCTGTCTGGCAGCTGCGTCGGCGTTTCCTCAACTGAGGCAGCGCAAC
GAGAAGCAGGTTCAAACCGGCGATGATGATTTGCCTTCCAAGGGCGCCAC
TATCGAGGAAGTAGTGGTGGAATCAGCCTTGTACATCAAACCGAAGTCTA
ATCCGCAGGTGCGTCGCGTCCGTTCGGTCCTGGATCAAATATCCGGAATC
CAGGCCGCTCACAAGAGGGTGAAGCGTCAGTTTGGGCGACAATTTGGTGG
TCAGTATGCTGGAAATCCCGGCTTCGGTGGCGGATTCGGTGGAGAGCCTG
GTTTTGGAGGTGGATTCGGCGGTAATCAAGGATTTGGAGGCAACCAGGGA
TTCGGAGGTAATCAGGGTTTCGGCGGTAATCAGGAATTCGGCGGTAACCC
AGGATTCGGAGGAAATCCCGGATTCGGCGGTAATCAAGGTGGAAAAGTTC
AGGCAGGTACATCGGCCGGCGCTGGGGGAACCAAAGCGGGTGTTGATGTT
GGTGCCGGACCAGATGGCGGCAATGCCAATGCCAACGTCGAGTTAAATCC
GCTGGGACCACTCGGACCCAGTGGTTACAACCAGGAGCAGGCCGCATCCA
ACGGAGCTGCCCACAGCAACTACAACAATGGACTCAACTCAGGATCCTCG
GCCGCCAGTGGGCAGGCTCAGGGCTTCCAGTCGCAGAGTGCCAATGGATC
ATTCGGTGCCTCCTCCGCAAGCACGGCCACTCAGTCCCAGAACACCAGCC
CCTTTGGATCCAATAATGCGGCAGGTGCTTCGCTGAGTCAGGTTTACCAT
CTTCCCAATGGACAGACAATAAACTTTAGCTCCACGAACAGCTTCGCTAA
TGGAGGAGCCAATCGTGGCAGTAGCCATGGATCGGCAGTTTCTGTCAGCC
GCGCAAGCTTTCTAGACCAT

BO12748.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-RB 939 CG17032-PB 1..936 17..952 4680 100 Plus
CG17032-RA 939 CG17032-PA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-RB 1127 CG17032-RB 84..1023 13..952 4685 99.9 Plus
CG17032-RA 1463 CG17032-RA 420..1359 13..952 4685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15959688..15960505 135..952 4090 100 Plus
3L 28110227 3L 15959262..15959383 13..134 595 99.2 Plus
Blast to na_te.dros performed on 2014-11-26 16:29:42 has no hits.

BO12748.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:50 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 1..939 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:20 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 418..1362 9..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:22 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 424..1359 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:50 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 418..1362 9..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:31 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
CG17032-RA 424..1359 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:31 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15959266..15959383 17..134 100 -> Plus
3L 15959688..15960505 135..954 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:22 Download gff for BO12748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15952366..15952483 17..134 100 -> Plus
arm_3L 15952788..15953605 135..954 99   Plus

BO12748.pep Sequence

Translation from 16 to 970

> BO12748.pep
MNVSIPVLFVALICLAAASAFPQLRQRNEKQVQTGDDDLPSKGATIEEVV
VESALYIKPKSNPQVRRVRSVLDQISGIQAAHKRVKRQFGRQFGGQYAGN
PGFGGGFGGEPGFGGGFGGNQGFGGNQGFGGNQGFGGNQEFGGNPGFGGN
PGFGGNQGGKVQAGTSAGAGGTKAGVDVGAGPDGGNANANVELNPLGPLG
PSGYNQEQAASNGAAHSNYNNGLNSGSSAASGQAQGFQSQSANGSFGASS
ASTATQSQNTSPFGSNNAAGASLSQVYHLPNGQTINFSSTNSFANGGANR
GSSHGSAVSVSRASFLDH

BO12748.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17032-PB 312 CG17032-PB 1..312 1..312 1629 100 Plus
CG17032-PA 312 CG17032-PA 1..312 1..312 1629 100 Plus
CG7296-PB 161 CG7296-PB 36..160 95..216 279 47.6 Plus
CG7296-PA 161 CG7296-PA 36..160 95..216 279 47.6 Plus
CG7296-PB 161 CG7296-PB 47..156 90..197 260 51.8 Plus
CG7296-PA 161 CG7296-PA 47..156 90..197 260 51.8 Plus
CG7296-PB 161 CG7296-PB 19..157 88..247 251 38.1 Plus
CG7296-PA 161 CG7296-PA 19..157 88..247 251 38.1 Plus
CG7299-PC 177 CG7299-PC 54..173 93..211 219 43.9 Plus