Clone Sequence Records
BO12752.3prime Sequence
779 bp (778 high quality bases) assembled on 2006-05-08
> BO12752.3prime
ATGGTCTAGAAAGCTTGCGCTGGCGTGCGCTGTACTCGTGCTGTTGTCGT
GGTTGTAGTGCTCCGTGTTGACAATCACCTGCACCACATATCCCTGGTGT
ATGCTGCACTCGTCGATTGGCACCTTGTCGCCCAGGAGTTTTCCGCTGTA
GAACCATCGCTGGCAGCAGGCGTCGACACCCTCCGCGGCCTGAAGCTTTT
TCTTGCACTGCCCCACGGTGTCCTTGGAGTAAACGGGTAGTTTAACATCA
GTCATGGTCGATGATATGCGCAGCTTCAAGAAGATATCGGTGCCGCCATC
CACGGGCTCAGAGTATTCGGCAGGCGAGTCGCGCCCGTTCTCCTCCTTTA
CGATATTTATGGGATATGACAGACAGTAGATGGGCACTTTGTACTGGGTG
CCCAGCTCATCGTAGCATTCTGTAAGGTAGCCATTGGGAACCGACACGTT
AGCCCCATCCAGGATGGCCTGGGCCATCTGAAAGTCAAGACCCTCGGCCG
CGGTGGTTGCCGCCCGTAGCGCATCCCAGATCTCCTTGCGACCGTCGAAG
GCCGGCGCAGTATCCCAGAACTCGTCCCGCTTGGACCGCAGCTGACCCTC
GGTCAGTGGCACGTCGGACCGCCACCTGATAGTCTCGTGGCAAAGCGGTC
GGTTCTTGCGCGCCGCACCCATGGCAATGCCTGCACTGGCCGGACGCGAG
ATGCTCGCAGAGGAGACGCTCATCGTCTCGTTGTCGGGGTTCATGCGACA
TACACAGGCGCCCATGTCGACTGATAACT
BO12752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-PA | 750 | CG1172-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 2443 | CG1172-RB | 260..1006 | 765..19 | 3735 | 100 | Minus |
CG1172-RC | 4339 | CG1172-RC | 260..1006 | 765..19 | 3735 | 100 | Minus |
CG1172-RA | 2017 | CG1172-RA | 260..1006 | 765..19 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5394473..5394727 | 685..431 | 1275 | 100 | Minus |
3R | 32079331 | 3R | 5395522..5395764 | 431..189 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 5396002..5396177 | 194..19 | 880 | 100 | Minus |
3R | 32079331 | 3R | 5394309..5394394 | 765..680 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:03:21 has no hits.
BO12752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:51 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:48 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-PA | 1..750 | 18..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:30 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 270..1026 | 13..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:17 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 254..1010 | 13..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:17 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5394303..5394393 | 681..771 | 97 | -> | Minus |
3R | 5394478..5394727 | 431..680 | 100 | -> | Minus |
3R | 5395523..5395763 | 190..430 | 100 | -> | Minus |
3R | 5396007..5396181 | 13..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:30 Download gff for
BO12752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1220025..1220115 | 681..771 | 97 | -> | Minus |
arm_3R | 1220200..1220449 | 431..680 | 100 | -> | Minus |
arm_3R | 1221245..1221485 | 190..430 | 100 | -> | Minus |
arm_3R | 1221729..1221903 | 13..189 | 98 | | Minus |
BO12752.5prime Sequence
779 bp (778 high quality bases) assembled on 2006-05-08
> BO12752.5prime
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCGCAAGCTTTCTAGACC
BO12752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-PA | 750 | CG1172-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 2443 | CG1172-RB | 260..1006 | 17..763 | 3735 | 100 | Plus |
CG1172-RC | 4339 | CG1172-RC | 260..1006 | 17..763 | 3735 | 100 | Plus |
CG1172-RA | 2017 | CG1172-RA | 260..1006 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5394473..5394727 | 97..351 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 5395522..5395764 | 351..593 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 5396002..5396177 | 588..763 | 880 | 100 | Plus |
3R | 32079331 | 3R | 5394309..5394394 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:28:54 has no hits.
BO12752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:52 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:50 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-PA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:50 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 270..1026 | 11..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:11 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 254..1010 | 11..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:11 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5394303..5394393 | 11..101 | 97 | -> | Plus |
3R | 5394478..5394727 | 102..351 | 100 | -> | Plus |
3R | 5395523..5395763 | 352..592 | 100 | -> | Plus |
3R | 5396007..5396181 | 593..769 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:50 Download gff for
BO12752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1220025..1220115 | 11..101 | 97 | -> | Plus |
arm_3R | 1220200..1220449 | 102..351 | 100 | -> | Plus |
arm_3R | 1221245..1221485 | 352..592 | 100 | -> | Plus |
arm_3R | 1221729..1221903 | 593..769 | 98 | | Plus |
BO12752.complete Sequence
781 bp assembled on 2006-10-11
GenBank Submission: FJ632549
> BO12752.complete
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCGCAAGCTTTCTAGACCAT
BO12752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 750 | CG1172-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG1172-RC | 750 | CG1172-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
CG1172-RA | 750 | CG1172-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-RB | 2443 | CG1172-RB | 260..1006 | 17..763 | 3735 | 100 | Plus |
CG1172-RC | 4339 | CG1172-RC | 260..1006 | 17..763 | 3735 | 100 | Plus |
CG1172-RA | 2017 | CG1172-RA | 260..1006 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5394473..5394727 | 97..351 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 5395522..5395764 | 351..593 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 5396002..5396177 | 588..763 | 880 | 100 | Plus |
3R | 32079331 | 3R | 5394309..5394394 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:18 has no hits.
BO12752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:29 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 1..750 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:06 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 248..1004 | 11..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:32 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 276..1022 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:29 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 248..1004 | 11..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:41 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1172-RA | 260..1006 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:41 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5394309..5394393 | 17..101 | 100 | -> | Plus |
3R | 5394478..5394727 | 102..351 | 100 | -> | Plus |
3R | 5395523..5395763 | 352..592 | 100 | -> | Plus |
3R | 5396007..5396177 | 593..765 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:32 Download gff for
BO12752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1220031..1220115 | 17..101 | 100 | -> | Plus |
arm_3R | 1220200..1220449 | 102..351 | 100 | -> | Plus |
arm_3R | 1221245..1221485 | 352..592 | 100 | -> | Plus |
arm_3R | 1221729..1221899 | 593..765 | 98 | | Plus |
BO12752.pep Sequence
Translation from 16 to 781
> BO12752.pep
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHASA
SFLDH
BO12752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1172-PB | 249 | CG1172-PB | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PC | 249 | CG1172-PC | 1..249 | 1..249 | 1326 | 100 | Plus |
CG1172-PA | 249 | CG1172-PA | 1..249 | 1..249 | 1326 | 100 | Plus |