Clone BO12752 Report

Search the DGRC for BO12752

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG1172-RA
Protein status:BO12752.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO12752.3prime Sequence

779 bp (778 high quality bases) assembled on 2006-05-08

> BO12752.3prime
ATGGTCTAGAAAGCTTGCGCTGGCGTGCGCTGTACTCGTGCTGTTGTCGT
GGTTGTAGTGCTCCGTGTTGACAATCACCTGCACCACATATCCCTGGTGT
ATGCTGCACTCGTCGATTGGCACCTTGTCGCCCAGGAGTTTTCCGCTGTA
GAACCATCGCTGGCAGCAGGCGTCGACACCCTCCGCGGCCTGAAGCTTTT
TCTTGCACTGCCCCACGGTGTCCTTGGAGTAAACGGGTAGTTTAACATCA
GTCATGGTCGATGATATGCGCAGCTTCAAGAAGATATCGGTGCCGCCATC
CACGGGCTCAGAGTATTCGGCAGGCGAGTCGCGCCCGTTCTCCTCCTTTA
CGATATTTATGGGATATGACAGACAGTAGATGGGCACTTTGTACTGGGTG
CCCAGCTCATCGTAGCATTCTGTAAGGTAGCCATTGGGAACCGACACGTT
AGCCCCATCCAGGATGGCCTGGGCCATCTGAAAGTCAAGACCCTCGGCCG
CGGTGGTTGCCGCCCGTAGCGCATCCCAGATCTCCTTGCGACCGTCGAAG
GCCGGCGCAGTATCCCAGAACTCGTCCCGCTTGGACCGCAGCTGACCCTC
GGTCAGTGGCACGTCGGACCGCCACCTGATAGTCTCGTGGCAAAGCGGTC
GGTTCTTGCGCGCCGCACCCATGGCAATGCCTGCACTGGCCGGACGCGAG
ATGCTCGCAGAGGAGACGCTCATCGTCTCGTTGTCGGGGTTCATGCGACA
TACACAGGCGCCCATGTCGACTGATAACT

BO12752.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PA 750 CG1172-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 2443 CG1172-RB 260..1006 765..19 3735 100 Minus
CG1172-RC 4339 CG1172-RC 260..1006 765..19 3735 100 Minus
CG1172-RA 2017 CG1172-RA 260..1006 765..19 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5394473..5394727 685..431 1275 100 Minus
3R 32079331 3R 5395522..5395764 431..189 1215 100 Minus
3R 32079331 3R 5396002..5396177 194..19 880 100 Minus
3R 32079331 3R 5394309..5394394 765..680 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:03:21 has no hits.

BO12752.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:51 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-PA 1..750 18..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:48 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-PA 1..750 18..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:30 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 270..1026 13..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:17 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 254..1010 13..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:17 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5394303..5394393 681..771 97 -> Minus
3R 5394478..5394727 431..680 100 -> Minus
3R 5395523..5395763 190..430 100 -> Minus
3R 5396007..5396181 13..189 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:30 Download gff for BO12752.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1220025..1220115 681..771 97 -> Minus
arm_3R 1220200..1220449 431..680 100 -> Minus
arm_3R 1221245..1221485 190..430 100 -> Minus
arm_3R 1221729..1221903 13..189 98   Minus

BO12752.5prime Sequence

779 bp (778 high quality bases) assembled on 2006-05-08

> BO12752.5prime
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCGCAAGCTTTCTAGACC

BO12752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PA 750 CG1172-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 2443 CG1172-RB 260..1006 17..763 3735 100 Plus
CG1172-RC 4339 CG1172-RC 260..1006 17..763 3735 100 Plus
CG1172-RA 2017 CG1172-RA 260..1006 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5394473..5394727 97..351 1275 100 Plus
3R 32079331 3R 5395522..5395764 351..593 1215 100 Plus
3R 32079331 3R 5396002..5396177 588..763 880 100 Plus
3R 32079331 3R 5394309..5394394 17..102 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:28:54 has no hits.

BO12752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:52 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-PA 1..750 17..764 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:50 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-PA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:50 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 270..1026 11..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:11 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 254..1010 11..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:11 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5394303..5394393 11..101 97 -> Plus
3R 5394478..5394727 102..351 100 -> Plus
3R 5395523..5395763 352..592 100 -> Plus
3R 5396007..5396181 593..769 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:50 Download gff for BO12752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1220025..1220115 11..101 97 -> Plus
arm_3R 1220200..1220449 102..351 100 -> Plus
arm_3R 1221245..1221485 352..592 100 -> Plus
arm_3R 1221729..1221903 593..769 98   Plus

BO12752.complete Sequence

781 bp assembled on 2006-10-11

GenBank Submission: FJ632549

> BO12752.complete
GAAGTTATCAGTCGACATGGGCGCCTGTGTATGTCGCATGAACCCCGACA
ACGAGACGATGAGCGTCTCCTCTGCGAGCATCTCGCGTCCGGCCAGTGCA
GGCATTGCCATGGGTGCGGCGCGCAAGAACCGACCGCTTTGCCACGAGAC
TATCAGGTGGCGGTCCGACGTGCCACTGACCGAGGGTCAGCTGCGGTCCA
AGCGGGACGAGTTCTGGGATACTGCGCCGGCCTTCGACGGTCGCAAGGAG
ATCTGGGATGCGCTACGGGCGGCAACCACCGCGGCCGAGGGTCTTGACTT
TCAGATGGCCCAGGCCATCCTGGATGGGGCTAACGTGTCGGTTCCCAATG
GCTACCTTACAGAATGCTACGATGAGCTGGGCACCCAGTACAAAGTGCCC
ATCTACTGTCTGTCATATCCCATAAATATCGTAAAGGAGGAGAACGGGCG
CGACTCGCCTGCCGAATACTCTGAGCCCGTGGATGGCGGCACCGATATCT
TCTTGAAGCTGCGCATATCATCGACCATGACTGATGTTAAACTACCCGTT
TACTCCAAGGACACCGTGGGGCAGTGCAAGAAAAAGCTTCAGGCCGCGGA
GGGTGTCGACGCCTGCTGCCAGCGATGGTTCTACAGCGGAAAACTCCTGG
GCGACAAGGTGCCAATCGACGAGTGCAGCATACACCAGGGATATGTGGTG
CAGGTGATTGTCAACACGGAGCACTACAACCACGACAACAGCACGAGTAC
AGCGCACGCCAGCGCAAGCTTTCTAGACCAT

BO12752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 750 CG1172-PB 1..747 17..763 3735 100 Plus
CG1172-RC 750 CG1172-PC 1..747 17..763 3735 100 Plus
CG1172-RA 750 CG1172-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-RB 2443 CG1172-RB 260..1006 17..763 3735 100 Plus
CG1172-RC 4339 CG1172-RC 260..1006 17..763 3735 100 Plus
CG1172-RA 2017 CG1172-RA 260..1006 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5394473..5394727 97..351 1275 100 Plus
3R 32079331 3R 5395522..5395764 351..593 1215 100 Plus
3R 32079331 3R 5396002..5396177 588..763 880 100 Plus
3R 32079331 3R 5394309..5394394 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:18 has no hits.

BO12752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:29 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 1..750 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:06 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 248..1004 11..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:32 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 276..1022 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:29 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 248..1004 11..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:41 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
CG1172-RA 260..1006 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:41 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5394309..5394393 17..101 100 -> Plus
3R 5394478..5394727 102..351 100 -> Plus
3R 5395523..5395763 352..592 100 -> Plus
3R 5396007..5396177 593..765 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:32 Download gff for BO12752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1220031..1220115 17..101 100 -> Plus
arm_3R 1220200..1220449 102..351 100 -> Plus
arm_3R 1221245..1221485 352..592 100 -> Plus
arm_3R 1221729..1221899 593..765 98   Plus

BO12752.pep Sequence

Translation from 16 to 781

> BO12752.pep
MGACVCRMNPDNETMSVSSASISRPASAGIAMGAARKNRPLCHETIRWRS
DVPLTEGQLRSKRDEFWDTAPAFDGRKEIWDALRAATTAAEGLDFQMAQA
ILDGANVSVPNGYLTECYDELGTQYKVPIYCLSYPINIVKEENGRDSPAE
YSEPVDGGTDIFLKLRISSTMTDVKLPVYSKDTVGQCKKKLQAAEGVDAC
CQRWFYSGKLLGDKVPIDECSIHQGYVVQVIVNTEHYNHDNSTSTAHASA
SFLDH

BO12752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1172-PB 249 CG1172-PB 1..249 1..249 1326 100 Plus
CG1172-PC 249 CG1172-PC 1..249 1..249 1326 100 Plus
CG1172-PA 249 CG1172-PA 1..249 1..249 1326 100 Plus