Clone BO12754 Report

Search the DGRC for BO12754

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptR-RA
Protein status:BO12754.pep: validated full length
Sequenced Size:586

Clone Sequence Records

BO12754.3prime Sequence

584 bp (583 high quality bases) assembled on 2006-05-08

> BO12754.3prime
ATGGTCTAGAAAGCTTGCTAGCAGAACACATAGGGACTTTTTCGGCTTCT
TCTGTTTCTTCTCGGGCGACTTCTTGTTGATCTGCCGGACCAGGTCGTAG
AAAATATCGTTCACATTCACTTTGGCTTTGGCTGAGGTCTCCATGAAGGC
GCAGTTGAACTGGGTGGCCAGGTTCTTGCCCAGCTCCTTGCCGACGACGC
GCTCCTCTTCGAGGTCGCACTTGTTGCCCACGAGCACCATGGGCACATCG
TCCGTGTCCTTCACCCGGAGTATCTGCTCGCGCAGGTCCTGCAGATCGTT
AAACGTCGATTGCGCCGTGATCGAGTAGACCAGCACGAATCCCTGGCCGT
TCTTCATGTACAAATCCCGCATGGCCGTGAACTGCTCCGTACCCGCCGTG
TCCAGGATCTCCAGCATGCACTGCTGTCCGTCCACCTCCACCTGCTTCCT
GTAACTGTCCTCGATGGTGGGATCGTACTTCTCCACGAAGATGCACTGGA
CAAACTGGACTGTCAGCGCGGATTTGCCCACGCCGCCGCTTCCAAGGACC
ACGATTTTGTACTCACGCATGTCGACTGATAACT

BO12754.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1956-PA 555 R-RA 1..552 570..19 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 2702 CG1956-RC 605..1157 571..19 2765 100 Minus
R-RB 2872 CG1956-RB 775..1327 571..19 2765 100 Minus
R-RA 2741 CG1956-RA 644..1196 571..19 2765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1860660..1861212 19..571 2765 100 Plus
3R 32079331 3R 9512159..9512282 438..561 200 77.4 Plus
Blast to na_te.dros performed on 2015-02-12 18:44:46 has no hits.

BO12754.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:44:55 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:54 Download gff for BO12754.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1956-PA 1..555 15..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:00 Download gff for BO12754.3prime
Subject Subject Range Query Range Percent Splice Strand
R-RA 637..1204 11..578 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:48 Download gff for BO12754.3prime
Subject Subject Range Query Range Percent Splice Strand
R-RA 637..1204 11..578 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:48 Download gff for BO12754.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1860652..1861219 11..578 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:00 Download gff for BO12754.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1860652..1861219 11..578 98   Plus

BO12754.5prime Sequence

584 bp (583 high quality bases) assembled on 2006-05-08

> BO12754.5prime
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTAGCAAGCTTTCTAGACC

BO12754.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1956-PA 555 R-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 2702 CG1956-RC 605..1157 16..568 2765 100 Plus
R-RB 2872 CG1956-RB 775..1327 16..568 2765 100 Plus
R-RA 2741 CG1956-RA 644..1196 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1860660..1861212 568..16 2765 100 Minus
3R 32079331 3R 9512159..9512282 149..26 200 77.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:39:46 has no hits.

BO12754.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:44:56 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:55 Download gff for BO12754.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1956-PA 1..555 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:42 Download gff for BO12754.5prime
Subject Subject Range Query Range Percent Splice Strand
R-RA 637..1204 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:52 Download gff for BO12754.5prime
Subject Subject Range Query Range Percent Splice Strand
R-RA 637..1204 9..576 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:52 Download gff for BO12754.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1860652..1861219 9..576 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:42 Download gff for BO12754.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1860652..1861219 9..576 98   Minus

BO12754.complete Sequence

586 bp assembled on 2006-10-11

GenBank Submission: FJ632550

> BO12754.complete
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTAGCAAGCTTTCTAGACCAT

BO12754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 555 CG1956-PC 1..552 17..568 2760 100 Plus
R-RB 555 CG1956-PB 1..552 17..568 2760 100 Plus
R-RA 555 CG1956-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
R-RC 2702 CG1956-RC 605..1157 16..568 2765 100 Plus
R-RB 2872 CG1956-RB 775..1327 16..568 2765 100 Plus
R-RA 2741 CG1956-RA 644..1196 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1860660..1861212 568..16 2765 100 Minus
3R 32079331 3R 9512159..9512282 149..26 200 77.4 Minus
Blast to na_te.dros performed on 2014-11-27 08:39:50 has no hits.

BO12754.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:04 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 1..555 17..572 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:10 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 632..1199 9..576 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:47 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 645..1196 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:04 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 632..1199 9..576 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:17 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
R-RA 645..1196 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:17 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1860658..1861211 17..570 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:47 Download gff for BO12754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1860658..1861211 17..570 99   Minus

BO12754.pep Sequence

Translation from 16 to 586

> BO12754.pep
MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQ
CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQI
LRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAK
VNVNDIFYDLVRQINKKSPEKKQKKPKKSLCVLLASFLDH

BO12754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
R-PC 184 CG1956-PC 1..184 1..184 939 100 Plus
R-PB 184 CG1956-PB 1..184 1..184 939 100 Plus
R-PA 184 CG1956-PA 1..184 1..184 939 100 Plus
Rap2l-PA 182 CG3204-PA 1..182 1..184 523 56 Plus
Ras85D-PA 189 CG9375-PA 1..182 1..178 515 54.1 Plus