Clone Sequence Records
BO12754.3prime Sequence
584 bp (583 high quality bases) assembled on 2006-05-08
> BO12754.3prime
ATGGTCTAGAAAGCTTGCTAGCAGAACACATAGGGACTTTTTCGGCTTCT
TCTGTTTCTTCTCGGGCGACTTCTTGTTGATCTGCCGGACCAGGTCGTAG
AAAATATCGTTCACATTCACTTTGGCTTTGGCTGAGGTCTCCATGAAGGC
GCAGTTGAACTGGGTGGCCAGGTTCTTGCCCAGCTCCTTGCCGACGACGC
GCTCCTCTTCGAGGTCGCACTTGTTGCCCACGAGCACCATGGGCACATCG
TCCGTGTCCTTCACCCGGAGTATCTGCTCGCGCAGGTCCTGCAGATCGTT
AAACGTCGATTGCGCCGTGATCGAGTAGACCAGCACGAATCCCTGGCCGT
TCTTCATGTACAAATCCCGCATGGCCGTGAACTGCTCCGTACCCGCCGTG
TCCAGGATCTCCAGCATGCACTGCTGTCCGTCCACCTCCACCTGCTTCCT
GTAACTGTCCTCGATGGTGGGATCGTACTTCTCCACGAAGATGCACTGGA
CAAACTGGACTGTCAGCGCGGATTTGCCCACGCCGCCGCTTCCAAGGACC
ACGATTTTGTACTCACGCATGTCGACTGATAACT
BO12754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1956-PA | 555 | R-RA | 1..552 | 570..19 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 2702 | CG1956-RC | 605..1157 | 571..19 | 2765 | 100 | Minus |
R-RB | 2872 | CG1956-RB | 775..1327 | 571..19 | 2765 | 100 | Minus |
R-RA | 2741 | CG1956-RA | 644..1196 | 571..19 | 2765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1860660..1861212 | 19..571 | 2765 | 100 | Plus |
3R | 32079331 | 3R | 9512159..9512282 | 438..561 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:44:46 has no hits.
BO12754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:44:55 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:54 Download gff for
BO12754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1956-PA | 1..555 | 15..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:00 Download gff for
BO12754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 637..1204 | 11..578 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:48 Download gff for
BO12754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 637..1204 | 11..578 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:48 Download gff for
BO12754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1860652..1861219 | 11..578 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:00 Download gff for
BO12754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1860652..1861219 | 11..578 | 98 | | Plus |
BO12754.5prime Sequence
584 bp (583 high quality bases) assembled on 2006-05-08
> BO12754.5prime
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTAGCAAGCTTTCTAGACC
BO12754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1956-PA | 555 | R-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 2702 | CG1956-RC | 605..1157 | 16..568 | 2765 | 100 | Plus |
R-RB | 2872 | CG1956-RB | 775..1327 | 16..568 | 2765 | 100 | Plus |
R-RA | 2741 | CG1956-RA | 644..1196 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1860660..1861212 | 568..16 | 2765 | 100 | Minus |
3R | 32079331 | 3R | 9512159..9512282 | 149..26 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:39:46 has no hits.
BO12754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:44:56 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:55 Download gff for
BO12754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1956-PA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:42 Download gff for
BO12754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 637..1204 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:52 Download gff for
BO12754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 637..1204 | 9..576 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:52 Download gff for
BO12754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1860652..1861219 | 9..576 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:42 Download gff for
BO12754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1860652..1861219 | 9..576 | 98 | | Minus |
BO12754.complete Sequence
586 bp assembled on 2006-10-11
GenBank Submission: FJ632550
> BO12754.complete
GAAGTTATCAGTCGACATGCGTGAGTACAAAATCGTGGTCCTTGGAAGCG
GCGGCGTGGGCAAATCCGCGCTGACAGTCCAGTTTGTCCAGTGCATCTTC
GTGGAGAAGTACGATCCCACCATCGAGGACAGTTACAGGAAGCAGGTGGA
GGTGGACGGACAGCAGTGCATGCTGGAGATCCTGGACACGGCGGGTACGG
AGCAGTTCACGGCCATGCGGGATTTGTACATGAAGAACGGCCAGGGATTC
GTGCTGGTCTACTCGATCACGGCGCAATCGACGTTTAACGATCTGCAGGA
CCTGCGCGAGCAGATACTCCGGGTGAAGGACACGGACGATGTGCCCATGG
TGCTCGTGGGCAACAAGTGCGACCTCGAAGAGGAGCGCGTCGTCGGCAAG
GAGCTGGGCAAGAACCTGGCCACCCAGTTCAACTGCGCCTTCATGGAGAC
CTCAGCCAAAGCCAAAGTGAATGTGAACGATATTTTCTACGACCTGGTCC
GGCAGATCAACAAGAAGTCGCCCGAGAAGAAACAGAAGAAGCCGAAAAAG
TCCCTATGTGTTCTGCTAGCAAGCTTTCTAGACCAT
BO12754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 555 | CG1956-PC | 1..552 | 17..568 | 2760 | 100 | Plus |
R-RB | 555 | CG1956-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
R-RA | 555 | CG1956-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-RC | 2702 | CG1956-RC | 605..1157 | 16..568 | 2765 | 100 | Plus |
R-RB | 2872 | CG1956-RB | 775..1327 | 16..568 | 2765 | 100 | Plus |
R-RA | 2741 | CG1956-RA | 644..1196 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1860660..1861212 | 568..16 | 2765 | 100 | Minus |
3R | 32079331 | 3R | 9512159..9512282 | 149..26 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:39:50 has no hits.
BO12754.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:04 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:10 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 632..1199 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:47 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 645..1196 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:04 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 632..1199 | 9..576 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:17 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
R-RA | 645..1196 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:17 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1860658..1861211 | 17..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:47 Download gff for
BO12754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1860658..1861211 | 17..570 | 99 | | Minus |
BO12754.pep Sequence
Translation from 16 to 586
> BO12754.pep
MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYRKQVEVDGQQ
CMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQI
LRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAK
VNVNDIFYDLVRQINKKSPEKKQKKPKKSLCVLLASFLDH
BO12754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R-PC | 184 | CG1956-PC | 1..184 | 1..184 | 939 | 100 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 1..184 | 939 | 100 | Plus |
R-PA | 184 | CG1956-PA | 1..184 | 1..184 | 939 | 100 | Plus |
Rap2l-PA | 182 | CG3204-PA | 1..182 | 1..184 | 523 | 56 | Plus |
Ras85D-PA | 189 | CG9375-PA | 1..182 | 1..178 | 515 | 54.1 | Plus |