Clone Sequence Records
BO12755.3prime Sequence
380 bp (379 high quality bases) assembled on 2006-05-09
> BO12755.3prime
ATGGTCTAGAAAGCTTGCAATGGTTTGGTTATCTACGCTGAGGGCATCCA
CTAACTGGGAAATTCGTTGAGCTCGCGTCAATTTCCACGATACGCAGGAC
AAAGCCGTGATGAAGAAGCCAATCGCCATTAGGAGAATGGCCTCGGAAGT
CTCATCCTGCCAGGCTTTTGAGACAACGCACAGTAAAATGAATCCGCTGA
GCAGGCAAAAGGATCCAACTACGACGGCCAGTGTTATGAGTATGATCACC
GGATCGTTTAGAGGACCATAATCAAAGAGTGTACGGCAGAGGGACGTTTT
CCGGGGCATAGGAGTACCACAGGCTTGAGAATAGGTGGGTAGAATGGGAA
CAGCTCTGCACTCCATGTCGACTGATAACT
BO12755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30080-PA | 351 | CG30080-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42662-RC | 1695 | CG42662-RC | 21..369 | 367..19 | 1745 | 100 | Minus |
| CG42662-RB | 2791 | CG42662-RB | 21..369 | 367..19 | 1745 | 100 | Minus |
| CG30080-RC | 1695 | CG30080-RC | 21..369 | 367..19 | 1745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15701379..15701573 | 126..320 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 15701217..15701324 | 19..126 | 540 | 100 | Plus |
| 2R | 25286936 | 2R | 15701629..15701676 | 320..367 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:05:06 has no hits.
BO12755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:56 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:56 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:58:43 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42662-RC | 11..375 | 11..378 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:59 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RC | 11..375 | 11..378 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:59 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15701211..15701323 | 11..125 | 97 | <- | Plus |
| 2R | 15701379..15701572 | 126..319 | 100 | <- | Plus |
| 2R | 15701629..15701686 | 320..378 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:58:43 Download gff for
BO12755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11588716..11588828 | 11..125 | 97 | <- | Plus |
| arm_2R | 11588884..11589077 | 126..319 | 100 | <- | Plus |
| arm_2R | 11589134..11589191 | 320..378 | 93 | | Plus |
BO12755.5prime Sequence
380 bp (379 high quality bases) assembled on 2006-05-08
> BO12755.5prime
GAAGTTATCAGTCGACATGGAGTGCAGAGCTGTTCCCATTCTACCCACCT
ATTCTCAAGCCTGTGGTACTCCTATGCCCCGGAAAACGTCCCTCTGCCGT
ACACTCTTTGATTATGGTCCTCTAAACGATCCGGTGATCATACTCATAAC
ACTGGCCGTCGTAGTTGGATCCTTTTGCCTGCTCAGCGGATTCATTTTAC
TGTGCGTTGTCTCAAAAGCCTGGCAGGATGAGACTTCCGAGGCCATTCTC
CTAATGGCGATTGGCTTCTTCATCACGGCTTTGTCCTGCGTATCGTGGAA
ATTGACGCGAGCTCAACGAATTTCCCAGTTAGTGGATGCCCTCAGCGTAG
ATAACCAAACCATTGCAAGCTTTCTAGACC
BO12755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30080-PA | 351 | CG30080-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42662-RC | 1695 | CG42662-RC | 21..369 | 16..364 | 1745 | 100 | Plus |
| CG42662-RB | 2791 | CG42662-RB | 21..369 | 16..364 | 1745 | 100 | Plus |
| CG30080-RC | 1695 | CG30080-RC | 21..369 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15701379..15701573 | 257..63 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 15701217..15701324 | 364..257 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 15701629..15701676 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:15:25 has no hits.
BO12755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:57 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:23:58 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:25 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42662-RC | 11..375 | 5..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:41 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RC | 11..375 | 5..372 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:41 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15701211..15701323 | 258..372 | 97 | <- | Minus |
| 2R | 15701379..15701572 | 64..257 | 100 | <- | Minus |
| 2R | 15701629..15701686 | 5..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:25 Download gff for
BO12755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11588716..11588828 | 258..372 | 97 | <- | Minus |
| arm_2R | 11588884..11589077 | 64..257 | 100 | <- | Minus |
| arm_2R | 11589134..11589191 | 5..63 | 93 | | Minus |
BO12755.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ632551
> BO12755.complete
GAAGTTATCAGTCGACATGGAGTGCAGAGCTGTTCCCATTCTACCCACCT
ATTCTCAAGCCTGTGGTACTCCTATGCCCCGGAAAACGTCCCTCTGCCGT
ACACTCTTTGATTATGGTCCTCTAAACGATCCGGTGATCATACTCATAAC
ACTGGCCGTCGTAGTTGGATCCTTTTGCCTGCTCAGCGGATTCATTTTAC
TGTGCGTTGTCTCAAAAGCCTGGCAGGATGAGACTTCCGAGGCCATTCTC
CTAATGGCGATTGGCTTCTTCATCACGGCTTTGTCCTGCGTATCGTGGAA
ATTGACGCGAGCTCAACGAATTTCCCAGTTAGTGGATGCCCTCAGCGTAG
ATAACCAAACCATTGCAAGCTTTCTAGACCAT
BO12755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30080-RC | 351 | CG30080-PC | 1..348 | 17..364 | 1740 | 100 | Plus |
| CG30080-RA | 351 | CG30080-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42662-RC | 1695 | CG42662-RC | 21..369 | 16..364 | 1745 | 100 | Plus |
| CG42662-RB | 2791 | CG42662-RB | 21..369 | 16..364 | 1745 | 100 | Plus |
| CG30080-RC | 1695 | CG30080-RC | 21..369 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15701379..15701573 | 257..63 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 15701217..15701324 | 364..257 | 540 | 100 | Minus |
| 2R | 25286936 | 2R | 15701629..15701676 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:26 has no hits.
BO12755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:03 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:07 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RA | 9..373 | 5..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:48 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42662-RC | 22..369 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:03 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RA | 9..373 | 5..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:26 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30080-RC | 22..369 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:26 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15701213..15701323 | 258..366 | 98 | <- | Minus |
| 2R | 15701379..15701572 | 64..257 | 100 | <- | Minus |
| 2R | 15701629..15701675 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:48 Download gff for
BO12755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11588884..11589077 | 64..257 | 100 | <- | Minus |
| arm_2R | 11589134..11589180 | 17..63 | 100 | | Minus |
| arm_2R | 11588718..11588828 | 258..366 | 98 | <- | Minus |
BO12755.pep Sequence
Translation from 16 to 382
> BO12755.pep
MECRAVPILPTYSQACGTPMPRKTSLCRTLFDYGPLNDPVIILITLAVVV
GSFCLLSGFILLCVVSKAWQDETSEAILLMAIGFFITALSCVSWKLTRAQ
RISQLVDALSVDNQTIASFLDH
BO12755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30080-PC | 116 | CG30080-PC | 1..116 | 1..116 | 594 | 100 | Plus |
| CG30080-PA | 116 | CG30080-PA | 1..116 | 1..116 | 594 | 100 | Plus |
