Clone BO12757 Report

Search the DGRC for BO12757

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:57
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO12757.pep:
Sequenced Size:700

Clone Sequence Records

BO12757.3prime Sequence

698 bp (697 high quality bases) assembled on 2006-05-09

> BO12757.3prime
ATGGTCTAGAAAGCTTGCAATGCCGCAACAGGACCGCTGGCCCGCAGGAT
CTCCGGGATCCGGGGCCTCCGAGTCATCGGAGTTGTTAAGGTTATCCGTA
TCCGGATTCTGGAGGCGAAGTGGACTCGCATCCGGTTGCCGTTGGCTCAA
CTGCTCCAGCATCAGCTGGGTCAGGAGCTCGAAGAGCTCAGCCACCCCCT
CGTTCTCCTTGGCCGAAGTTTCTACATATTGAGCGCCAACCGTGCGCGCA
TATTGAAGGGCCTCATCGTGCGTTACTGCTCGCTGTTCCTCCAAATCAGT
CTTGTTGCCGACGATTATTAAGGCAATCTCCGTGCCGCGCATTTGCCGGA
GCTCCCGCACCCAGGATTTGACCTTCTGGAACGAGTCTCGGTCCGTTATG
TCATAGACGAGCAGGGCGCCATCGGAGCCGCGATAGTAGATGGGTCCCAG
GGCGTGGAACCGCTCCTGACCAGCCGTGTCCCAAATATTCAACTGCGCCC
TTCTCCCATCCTCCAGGGACATCTTGCGGCTGACAAAGGAAGCCTGCAGG
GTGCTTAGGTGCTGGGCATTGAACCGGTCTTCCATGTAGCGCAGCACCAG
CGACGTCTTGCCCACACAACCTTCGCCCAGCAGCACCGCCTTGAAATTAA
GCGTGGGGCCGTTCCTCGCTCTGCTCGAGCTCATGTCGACTGATAACT

BO12757.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17515-PB 822 Rab21-RB 154..819 684..19 3305 99.8 Minus
CG17515-PA 570 Rab21-RA 1..567 585..19 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..824 684..19 3315 99.8 Minus
Rab21-RD 1050 CG17515-RD 145..810 684..19 3315 99.8 Minus
Rab21-RA 1077 CG17515-RA 234..837 622..19 3020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012380..23012983 19..622 3020 100 Plus
X 23542271 X 23013041..23013106 619..684 315 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:14:48 has no hits.

BO12757.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:54 Download gff for BO12757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17515-PB 150..822 18..692 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:41:51 Download gff for BO12757.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 141..814 13..692 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:12 Download gff for BO12757.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 141..814 13..692 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12 Download gff for BO12757.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23012376..23012981 13..620 99 <- Plus
X 23013043..23013110 621..692 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:41:51 Download gff for BO12757.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414212..22414817 13..620 99 <- Plus
arm_X 22414879..22414946 621..692 93   Plus

BO12757.5prime Sequence

698 bp (697 high quality bases) assembled on 2006-05-08

> BO12757.5prime
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACC

BO12757.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17515-PB 822 Rab21-RB 154..819 17..682 3305 99.8 Plus
CG17515-PA 570 Rab21-RA 1..567 116..682 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..824 17..682 3315 99.8 Plus
Rab21-RD 1050 CG17515-RD 145..810 17..682 3315 99.8 Plus
Rab21-RA 1077 CG17515-RA 234..837 79..682 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012380..23012983 682..79 3020 100 Minus
X 23542271 X 23013041..23013106 82..17 315 98.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:50 has no hits.

BO12757.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:54 Download gff for BO12757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17515-PB 150..822 9..683 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:52:33 Download gff for BO12757.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 141..814 9..688 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:54 Download gff for BO12757.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 141..814 9..688 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:54 Download gff for BO12757.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23012376..23012981 81..688 99 <- Minus
X 23013043..23013110 9..80 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:52:33 Download gff for BO12757.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414212..22414817 81..688 99 <- Minus
arm_X 22414879..22414946 9..80 93   Minus

BO12757.complete Sequence

700 bp assembled on 2006-10-11

GenBank Submission: FJ632552

> BO12757.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACCAT

BO12757.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 669 CG17515-PC 1..666 17..682 3315 99.8 Plus
Rab21-RD 669 CG17515-PD 1..666 17..682 3315 99.8 Plus
Rab21-RA 570 CG17515-PA 1..567 116..682 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1064 CG17515-RC 159..824 17..682 3315 99.8 Plus
Rab21-RD 1050 CG17515-RD 145..810 17..682 3315 99.8 Plus
Rab21-RA 1077 CG17515-RA 234..837 79..682 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012380..23012983 682..79 3020 100 Minus
X 23542271 X 23013041..23013106 82..17 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 10:25:42 has no hits.

BO12757.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:30 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:07 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 150..823 9..688 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:46 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..810 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:30 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 150..823 9..688 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:36 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 145..810 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:36 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012376..23012981 81..684 99 <- Minus
X 23013043..23013106 17..80 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:46 Download gff for BO12757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414212..22414817 81..684 99 <- Minus
arm_X 22414879..22414942 17..80 98   Minus

BO12757.pep Sequence

Translation from 16 to 700

> BO12757.pep
MSSSRARNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGIASFLDH

BO12757.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 1..222 1136 99.5 Plus
Rab21-PD 222 CG17515-PD 1..222 1..222 1136 99.5 Plus
Rab21-PA 189 CG17515-PA 1..189 34..222 974 100 Plus
Rab5-PI 219 CG3664-PI 20..183 8..168 384 46.7 Plus
Rab5-PH 219 CG3664-PH 20..183 8..168 384 46.7 Plus