Clone Sequence Records
BO12757.3prime Sequence
698 bp (697 high quality bases) assembled on 2006-05-09
> BO12757.3prime
ATGGTCTAGAAAGCTTGCAATGCCGCAACAGGACCGCTGGCCCGCAGGAT
CTCCGGGATCCGGGGCCTCCGAGTCATCGGAGTTGTTAAGGTTATCCGTA
TCCGGATTCTGGAGGCGAAGTGGACTCGCATCCGGTTGCCGTTGGCTCAA
CTGCTCCAGCATCAGCTGGGTCAGGAGCTCGAAGAGCTCAGCCACCCCCT
CGTTCTCCTTGGCCGAAGTTTCTACATATTGAGCGCCAACCGTGCGCGCA
TATTGAAGGGCCTCATCGTGCGTTACTGCTCGCTGTTCCTCCAAATCAGT
CTTGTTGCCGACGATTATTAAGGCAATCTCCGTGCCGCGCATTTGCCGGA
GCTCCCGCACCCAGGATTTGACCTTCTGGAACGAGTCTCGGTCCGTTATG
TCATAGACGAGCAGGGCGCCATCGGAGCCGCGATAGTAGATGGGTCCCAG
GGCGTGGAACCGCTCCTGACCAGCCGTGTCCCAAATATTCAACTGCGCCC
TTCTCCCATCCTCCAGGGACATCTTGCGGCTGACAAAGGAAGCCTGCAGG
GTGCTTAGGTGCTGGGCATTGAACCGGTCTTCCATGTAGCGCAGCACCAG
CGACGTCTTGCCCACACAACCTTCGCCCAGCAGCACCGCCTTGAAATTAA
GCGTGGGGCCGTTCCTCGCTCTGCTCGAGCTCATGTCGACTGATAACT
BO12757.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17515-PB | 822 | Rab21-RB | 154..819 | 684..19 | 3305 | 99.8 | Minus |
CG17515-PA | 570 | Rab21-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 1064 | CG17515-RC | 159..824 | 684..19 | 3315 | 99.8 | Minus |
Rab21-RD | 1050 | CG17515-RD | 145..810 | 684..19 | 3315 | 99.8 | Minus |
Rab21-RA | 1077 | CG17515-RA | 234..837 | 622..19 | 3020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23012380..23012983 | 19..622 | 3020 | 100 | Plus |
X | 23542271 | X | 23013041..23013106 | 619..684 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:14:48 has no hits.
BO12757.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:54 Download gff for
BO12757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17515-PB | 150..822 | 18..692 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:41:51 Download gff for
BO12757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 141..814 | 13..692 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:12 Download gff for
BO12757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 141..814 | 13..692 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12 Download gff for
BO12757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23012376..23012981 | 13..620 | 99 | <- | Plus |
X | 23013043..23013110 | 621..692 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:41:51 Download gff for
BO12757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22414212..22414817 | 13..620 | 99 | <- | Plus |
arm_X | 22414879..22414946 | 621..692 | 93 | | Plus |
BO12757.5prime Sequence
698 bp (697 high quality bases) assembled on 2006-05-08
> BO12757.5prime
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACC
BO12757.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17515-PB | 822 | Rab21-RB | 154..819 | 17..682 | 3305 | 99.8 | Plus |
CG17515-PA | 570 | Rab21-RA | 1..567 | 116..682 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 1064 | CG17515-RC | 159..824 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RD | 1050 | CG17515-RD | 145..810 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RA | 1077 | CG17515-RA | 234..837 | 79..682 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23012380..23012983 | 682..79 | 3020 | 100 | Minus |
X | 23542271 | X | 23013041..23013106 | 82..17 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:50 has no hits.
BO12757.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:54 Download gff for
BO12757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17515-PB | 150..822 | 9..683 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:52:33 Download gff for
BO12757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 141..814 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:54 Download gff for
BO12757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 141..814 | 9..688 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:54 Download gff for
BO12757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23012376..23012981 | 81..688 | 99 | <- | Minus |
X | 23013043..23013110 | 9..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:52:33 Download gff for
BO12757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22414212..22414817 | 81..688 | 99 | <- | Minus |
arm_X | 22414879..22414946 | 9..80 | 93 | | Minus |
BO12757.complete Sequence
700 bp assembled on 2006-10-11
GenBank Submission: FJ632552
> BO12757.complete
GAAGTTATCAGTCGACATGAGCTCGAGCAGAGCGAGGAACGGCCCCACGC
TTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAAGACGTCG
CTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACCTAAGCAC
CCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGATGGGAGAA
GGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTTCCACGCC
CTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCGTCTATGA
CATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTGCGGGAGC
TCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGGCAACAAG
ACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCCTTCAATA
TGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAGGAGAACG
AGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCTGGAGCAG
TTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGAATCCGGA
TACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGATCCCGGAG
ATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTGCAAGCTTTCTAGACCAT
BO12757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 669 | CG17515-PC | 1..666 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RD | 669 | CG17515-PD | 1..666 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RA | 570 | CG17515-PA | 1..567 | 116..682 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-RC | 1064 | CG17515-RC | 159..824 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RD | 1050 | CG17515-RD | 145..810 | 17..682 | 3315 | 99.8 | Plus |
Rab21-RA | 1077 | CG17515-RA | 234..837 | 79..682 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23012380..23012983 | 682..79 | 3020 | 100 | Minus |
X | 23542271 | X | 23013041..23013106 | 82..17 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:25:42 has no hits.
BO12757.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:30 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 1..669 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:07 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 150..823 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:46 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..810 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:30 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RC | 150..823 | 9..688 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:36 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab21-RD | 145..810 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:36 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23012376..23012981 | 81..684 | 99 | <- | Minus |
X | 23013043..23013106 | 17..80 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:46 Download gff for
BO12757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 22414212..22414817 | 81..684 | 99 | <- | Minus |
arm_X | 22414879..22414942 | 17..80 | 98 | | Minus |
BO12757.pep Sequence
Translation from 16 to 700
> BO12757.pep
MSSSRARNGPTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASF
VSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRD
SFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVG
AQYVETSAKENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLN
NSDDSEAPDPGDPAGQRSCCGIASFLDH
BO12757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab21-PC | 222 | CG17515-PC | 1..222 | 1..222 | 1136 | 99.5 | Plus |
Rab21-PD | 222 | CG17515-PD | 1..222 | 1..222 | 1136 | 99.5 | Plus |
Rab21-PA | 189 | CG17515-PA | 1..189 | 34..222 | 974 | 100 | Plus |
Rab5-PI | 219 | CG3664-PI | 20..183 | 8..168 | 384 | 46.7 | Plus |
Rab5-PH | 219 | CG3664-PH | 20..183 | 8..168 | 384 | 46.7 | Plus |