Clone Sequence Records
BO12758.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO12758.3prime
ATGGTCTAGAAAGCTTGCGGCATCGTACACGGACTTCAGGGCCAATTCGG
GCTTGTCGTAGCCCAGTTCCTCGATGGTTGGGATGCCCAGCTCCTGCAGT
GTGGGGGTGATCTTCTCCAGCAAGTAGGGATAGAGGGTGGCCTTTTGGTC
GCCGCACTTGTCCTTGCATCCCTCCAGCCACCTGATGGCCAGTGCAATGT
CGTTGACGCGACGGCTGGCACGCAGACCGGCCTCGATGATCTTGGGGCTG
GGCACCAGATCCATGCCCAGCAGATCGTTCATGCCCTTGCGGATCTCCCA
GCCATCGATGCCCTCACGGCTGAAGTACTTCTCGTAGCGCTTGTCGAACT
CCTCCGCCGATTCCTCGGTTCCGTGCAGACAGCGCACGGCGGCCACGCGC
GACGATGTGCCGACGAGGCTGCTGCGGAGGGCGCTTGCCAGGTTACGGGC
CGTGATGCTCAACATGTCGACTGATAACT
BO12758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14724-PA | 450 | CoVa-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
| CG14724-PB | 450 | CoVa-RB | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-RC | 635 | CG14724-RC | 46..494 | 467..19 | 2245 | 100 | Minus |
| CoVa-RA | 730 | CG14724-RA | 141..589 | 467..19 | 2245 | 100 | Minus |
| CoVa-RB | 701 | CG14724-RB | 113..560 | 466..19 | 2240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11819711..11820158 | 466..19 | 2240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:46:06 has no hits.
BO12758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:02 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-PB | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:02 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14724-PB | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:44 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 13..472 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:55 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 13..472 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:55 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11819711..11820163 | 13..466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:44 Download gff for
BO12758.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7645433..7645885 | 13..466 | 99 | | Minus |
BO12758.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO12758.5prime
GAAGTTATCAGTCGACATGTTGAGCATCACGGCCCGTAACCTGGCAAGCG
CCCTCCGCAGCAGCCTCGTCGGCACATCGTCGCGCGTGGCCGCCGTGCGC
TGTCTGCACGGAACCGAGGAATCGGCGGAGGAGTTCGACAAGCGCTACGA
GAAGTACTTCAGCCGTGAGGGCATCGATGGCTGGGAGATCCGCAAGGGCA
TGAACGATCTGCTGGGCATGGATCTGGTGCCCAGCCCCAAGATCATCGAG
GCCGGTCTGCGTGCCAGCCGTCGCGTCAACGACATTGCACTGGCCATCAG
GTGGCTGGAGGGATGCAAGGACAAGTGCGGCGACCAAAAGGCCACCCTCT
ATCCCTACTTGCTGGAGAAGATCACCCCCACACTGCAGGAGCTGGGCATC
CCAACCATCGAGGAACTGGGCTACGACAAGCCCGAATTGGCCCTGAAGTC
CGTGTACGATGCCGCAAGCTTTCTAGACC
BO12758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14724-PA | 450 | CoVa-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG14724-PB | 450 | CoVa-RB | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-RC | 635 | CG14724-RC | 46..494 | 15..463 | 2245 | 100 | Plus |
| CoVa-RA | 730 | CG14724-RA | 141..589 | 15..463 | 2245 | 100 | Plus |
| CoVa-RB | 701 | CG14724-RB | 113..560 | 16..463 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11819711..11820158 | 16..463 | 2240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:04:13 has no hits.
BO12758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:03 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-PB | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:04 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14724-PB | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:40 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 10..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:25 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 10..469 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:25 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11819711..11820163 | 16..469 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:40 Download gff for
BO12758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7645433..7645885 | 16..469 | 99 | | Plus |
BO12758.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632553
> BO12758.complete
GAAGTTATCAGTCGACATGTTGAGCATCACGGCCCGTAACCTGGCAAGCG
CCCTCCGCAGCAGCCTCGTCGGCACATCGTCGCGCGTGGCCGCCGTGCGC
TGTCTGCACGGAACCGAGGAATCGGCGGAGGAGTTCGACAAGCGCTACGA
GAAGTACTTCAGCCGTGAGGGCATCGATGGCTGGGAGATCCGCAAGGGCA
TGAACGATCTGCTGGGCATGGATCTGGTGCCCAGCCCCAAGATCATCGAG
GCCGGTCTGCGTGCCAGCCGTCGCGTCAACGACATTGCACTGGCCATCAG
GTGGCTGGAGGGATGCAAGGACAAGTGCGGCGACCAAAAGGCCACCCTCT
ATCCCTACTTGCTGGAGAAGATCACCCCCACACTGCAGGAGCTGGGCATC
CCAACCATCGAGGAACTGGGCTACGACAAGCCCGAATTGGCCCTGAAGTC
CGTGTACGATGCCGCAAGCTTTCTAGACCAT
BO12758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-RC | 450 | CG14724-PC | 1..447 | 17..463 | 2235 | 100 | Plus |
| CoVa-RB | 450 | CG14724-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
| CoVa-RA | 450 | CG14724-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-RC | 635 | CG14724-RC | 46..494 | 15..463 | 2245 | 100 | Plus |
| CoVa-RA | 730 | CG14724-RA | 141..589 | 15..463 | 2245 | 100 | Plus |
| CoVa-RB | 701 | CG14724-RB | 113..560 | 16..463 | 2240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11819711..11820158 | 16..463 | 2240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:08:48 has no hits.
BO12758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:31 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RB | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:09 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 10..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:35 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 148..589 | 22..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:31 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 136..594 | 10..469 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:52 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVa-RA | 148..589 | 22..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:52 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11819717..11820158 | 22..465 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:35 Download gff for
BO12758.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7645439..7645880 | 22..465 | 99 | | Plus |
BO12758.pep Sequence
Translation from 16 to 481
> BO12758.pep
MLSITARNLASALRSSLVGTSSRVAAVRCLHGTEESAEEFDKRYEKYFSR
EGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGC
KDKCGDQKATLYPYLLEKITPTLQELGIPTIEELGYDKPELALKSVYDAA
SFLDH
BO12758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVa-PC | 149 | CG14724-PC | 1..149 | 1..149 | 762 | 100 | Plus |
| CoVa-PB | 149 | CG14724-PB | 1..149 | 1..149 | 762 | 100 | Plus |
| CoVa-PA | 149 | CG14724-PA | 1..149 | 1..149 | 762 | 100 | Plus |
