Clone Sequence Records
BO12761.3prime Sequence
933 bp (779 high quality bases) assembled on 2006-05-09
> BO12761.3prime
ATGGTCTAGAAAGCTTGCACCGGACGAGCTGGGGCCAATAGCCTGCGCCA
CCGTCTCGACCACTGTCCAGCCCTCGAGAGCTGTGTCCTTGATGAAACGC
GGCGGCAGGACAAATCCGTAGGCTCCACGATCCCTCAGCTCGATGGTGTA
CACATATTTGACACCAAGCGCGGCGCGGCTCCAGTCATCGGAGCCACCGC
CTGCGATTCCCAAAACTTCATGGGTGACCGCTGCCCTGTACGAAGTGCCC
GTCTTCTGGAGGATTCGCTCCGCGGCCAAACTGCTCACTCGCTGCAGGAC
ACTGGCATCCTTGACCTTGACGGCCTTGTAGGCCCACGGATAAACAATCA
TCTGTCCGTAGCTGTGGAAGGTCAAATACGATTCCAGATTGTACTTCCGC
TTGGCCAAAAACTCGGCCACCGCTCGCGTTTCCCGCTCCGAAGCTGGCGC
GGATCCGCGGTACGTATCACTGCACGGATTCGTCGACGAGCCATAGCCAT
TCCAGCCGATGTCGAAGTTACGGTTGAGATCCACACCGCTGCACTGGGCG
CGACGCGATGGCGAGCGATTCTTGCGCCACAGGCGATTCGTTGTTCGACT
GTACTCGTAGCCATCGGGATTCATCACTGGCATTATGTACCAGGTGAGGC
CGCGAATGTGCGCCGGCTGGTTCTCCCAGTCGGACATCAGCTGGTACAGG
ATGAAGGTCACCGTCGCGGGGCTGATCCATTCGCGGGCGTGGATGCCGCC
GTCGATCCACACCTTCTTGTTCTCGCGGGGATTCTCCGAGATTCTAAGCA
CTTTCAGATCGCGTCCCTCGGCCGTTTGGCCAATGGTGTATAGTCGCACG
ATGTTGGGGAATTTGGTGCGGATCTCCCGCATAAAGCTATAGATGGTCTC
CAGATCGTGATAGTCCTTCCAGTGCATGCTGCT
BO12761.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-PA | 1338 | CG3097-RA | 421..1335 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-RA | 1983 | CG3097-RA | 830..1744 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5766094..5766871 | 19..796 | 3890 | 100 | Plus |
X | 23542271 | X | 5767074..5767213 | 794..933 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:30:12 has no hits.
BO12761.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:08 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-PA | 421..1338 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:11 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-PA | 421..1338 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:14 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 830..1748 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:48 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 830..1748 | 15..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:48 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5766090..5766868 | 15..793 | 99 | <- | Plus |
X | 5767074..5767213 | 794..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:14 Download gff for
BO12761.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5660123..5660901 | 15..793 | 99 | <- | Plus |
arm_X | 5661107..5661246 | 794..933 | 100 | | Plus |
BO12761.5prime Sequence
916 bp (843 high quality bases) assembled on 2006-05-08
> BO12761.5prime
GAAGTTATCAGTCGACATGACGCAAAAAACTATGTTGCTGCAGTTGCTGC
TCCTTGTGGCAGCCGTAGCAGCCAGCTTGGCCAACGAGTTGCCCTCCAAT
CTCACACTGCTGGATGCCAACGAGATACCGCAACGGTACGATGAGGCGCA
GCTCTGGAGGATCTACAACATCTCGGAGGCGATGCAAAAGCGTGTGCCCG
TGGGCCAAATGCTGGAGCAGAAGTTCGGTGGCAATATCTGGAAGGAGAAC
TCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCCGCCCG
CAGCTTTCTATCCGCCCATCGTCTGGATCCCCAGATTCTCTCCCACAACA
TTCAATCCATGATCGACGAGGAGCTTCTCGAAGGCATTCAGTCCAGTTCG
TTTGGTCACGGAAGGAGAACGAAAAAGGCCGCCAGGAGCAGCATGCACTG
GAAGGACTATCACGATCTGGAGACCATCTATAGCTTTATGCGGGAGATCC
GCACCAAATTCCCCAACATCGTGCGACTATACACCATTGGCCAAACGGCC
GAGGGACGCGATCTGAAAGTGCTTAGAATCTCGGAGAATCCCCGCGAGAA
CAAGAAGGTGTGGATCGACGGCGGCATCCACGCCCGCGAATGGATCAGCC
CCGCGACGGTGACCTTCATCCTGTACCAGCTGATGTCCGACTGGGAGAAC
CAGCCGGCGCACATTCGCGGCCTCACCTGGTACATAATGCCAGTGATGAA
TCCCGATGGCTACGAGTACAGTCGAACAACGAATCGCCTGTGGCGCAAGA
ATCGCTCGCCATCGCGTCGCGCCCAGTGCAGCGGTGTGGATCTCAACCGT
AACTTCCACATCGGCTGGAATGGCTATGGCTCGTCGACGAATCCGTGCAG
TGATACGTACCGCGGA
BO12761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-PA | 1338 | CG3097-RA | 1..900 | 17..916 | 4475 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-RA | 1983 | CG3097-RA | 410..1309 | 17..916 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5767289..5767694 | 422..17 | 2030 | 100 | Minus |
X | 23542271 | X | 5766529..5766871 | 916..574 | 1700 | 99.7 | Minus |
X | 23542271 | X | 5767074..5767227 | 576..423 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:01:56 has no hits.
BO12761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:09 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:12 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:45 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 405..1308 | 13..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:55 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 405..1308 | 13..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:55 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5766530..5766868 | 577..915 | 99 | <- | Minus |
X | 5767074..5767227 | 423..576 | 100 | <- | Minus |
X | 5767289..5767699 | 13..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:45 Download gff for
BO12761.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5660563..5660901 | 577..915 | 99 | <- | Minus |
arm_X | 5661107..5661260 | 423..576 | 100 | <- | Minus |
arm_X | 5661322..5661732 | 13..422 | 99 | | Minus |
BO12761.complete Sequence
1369 bp assembled on 2006-10-11
GenBank Submission: FJ632554
> BO12761.complete
GAAGTTATCAGTCGACATGACGCAAAAAACTATGTTGCTGCAGTTGCTGC
TCCTTGTGGCAGCCGTAGCAGCCAGCTTGGCCAACGAGTTGCCCTCCAAT
CTCACACTGCTGGATGCCAACGAGATACCGCAACGGTACGATGAGGCGCA
GCTCTGGAGGATCTACAACATCTCGGAGGCGATGCAAAAGCGTGTGCCCG
TGGGCCAAATGCTGGAGCAGAAGTTCGGTGGCAATATCTGGAAGGAGAAC
TCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCCGCCCG
CAGCTTTCTATCCGCCCATCGTCTGGATCCCCAGATTCTCTCCCACAACA
TTCAATCCATGATCGACGAGGAGCTTCTCGAAGGCATTCAGTCCAGTTCG
TTTGGTCACGGAAGGAGAACGAAAAAGGCCGCCAGGAGCAGCATGCACTG
GAAGGACTATCACGATCTGGAGACCATCTATAGCTTTATGCGGGAGATCC
GCACCAAATTCCCCAACATCGTGCGACTATACACCATTGGCCAAACGGCC
GAGGGACGCGATCTGAAAGTGCTTAGAATCTCGGAGAATCCCCGCGAGAA
CAAGAAGGTGTGGATCGACGGCGGCATCCACGCCCGCGAATGGATCAGCC
CCGCGACGGTGACCTTCATCCTGTACCAGCTGATGTCCGACTGGGAGAAC
CAGCCGGCGCACATTCGCGGCCTCACCTGGTACATAATGCCAGTGATGAA
TCCCGATGGCTACGAGTACAGTCGAACAACGAATCGCCTGTGGCGCAAGA
ATCGCTCGCCATCGCGTCGCGCCCAGTGCAGCGGTGTGGATCTCAACCGT
AACTTCGACATCGGCTGGAATGGCTATGGCTCGTCGACGAATCCGTGCAG
TGATACGTACCGCGGATCCGCGCCAGCTTCGGAGCGGGAAACGCGAGCGG
TGGCCGAGTTTTTGGCCAAGCGGAAGTACAATCTGGAATCGTATTTGACC
TTCCACAGCTACGGACAGATGATTGTTTATCCGTGGGCCTACAAGGCCGT
CAAGGTCAAGGATGCCAGTGTCCTGCAGCGAGTGAGCAGTTTGGCCGCGG
AGCGAATCCTCCAGAAGACGGGCACTTCGTACAGGGCAGCGGTCACCCAT
GAAGTTTTGGGAATCGCAGGCGGTGGCTCCGATGACTGGAGCCGCGCCGC
GCTTGGTGTCAAATATGTGTACACCATCGAGCTGAGGGATCGTGGAGCCT
ACGGATTTGTCCTGCCGCCGCGTTTCATCAAGGACACAGCTCTCGAGGGC
TGGACAGTGGTCGAGACGGTGGCGCAGGCTATTGGCCCCAGCTCGTCCGG
TGCAAGCTTTCTAGACCAT
BO12761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-RA | 1338 | CG3097-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-RA | 1983 | CG3097-RA | 410..1744 | 17..1351 | 6675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5766094..5766871 | 1351..574 | 3890 | 100 | Minus |
X | 23542271 | X | 5767289..5767694 | 422..17 | 2030 | 100 | Minus |
X | 23542271 | X | 5767074..5767227 | 576..423 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:22:33 has no hits.
BO12761.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:33 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 1..1338 | 17..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:12 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 404..1747 | 13..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:20 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 410..1744 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:33 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 404..1747 | 13..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:00 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3097-RA | 410..1744 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:00 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5766091..5766868 | 577..1353 | 99 | <- | Minus |
X | 5767074..5767227 | 423..576 | 100 | <- | Minus |
X | 5767289..5767694 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:20 Download gff for
BO12761.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5660124..5660901 | 577..1353 | 99 | <- | Minus |
arm_X | 5661107..5661260 | 423..576 | 100 | <- | Minus |
arm_X | 5661322..5661727 | 17..422 | 100 | | Minus |
BO12761.pep Sequence
Translation from 16 to 1369
> BO12761.pep
MTQKTMLLQLLLLVAAVAASLANELPSNLTLLDANEIPQRYDEAQLWRIY
NISEAMQKRVPVGQMLEQKFGGNIWKENSKFLDISIARDQLKAARSFLSA
HRLDPQILSHNIQSMIDEELLEGIQSSSFGHGRRTKKAARSSMHWKDYHD
LETIYSFMREIRTKFPNIVRLYTIGQTAEGRDLKVLRISENPRENKKVWI
DGGIHAREWISPATVTFILYQLMSDWENQPAHIRGLTWYIMPVMNPDGYE
YSRTTNRLWRKNRSPSRRAQCSGVDLNRNFDIGWNGYGSSTNPCSDTYRG
SAPASERETRAVAEFLAKRKYNLESYLTFHSYGQMIVYPWAYKAVKVKDA
SVLQRVSSLAAERILQKTGTSYRAAVTHEVLGIAGGGSDDWSRAALGVKY
VYTIELRDRGAYGFVLPPRFIKDTALEGWTVVETVAQAIGPSSSGASFLD
H
BO12761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3097-PA | 445 | CG3097-PA | 1..445 | 1..445 | 2318 | 100 | Plus |
CG3108-PA | 1132 | CG3108-PA | 693..1112 | 17..439 | 854 | 42.8 | Plus |
CG42264-PA | 634 | CG42264-PA | 218..633 | 39..439 | 617 | 32.9 | Plus |
CG42264-PB | 521 | CG42264-PB | 77..520 | 32..439 | 611 | 33.2 | Plus |
CG18585-PB | 422 | CG18585-PB | 3..395 | 6..418 | 586 | 32.7 | Plus |