Clone BO12761 Report

Search the DGRC for BO12761

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG3097-RA
Protein status:BO12761.pep: validated full length
Sequenced Size:1369

Clone Sequence Records

BO12761.3prime Sequence

933 bp (779 high quality bases) assembled on 2006-05-09

> BO12761.3prime
ATGGTCTAGAAAGCTTGCACCGGACGAGCTGGGGCCAATAGCCTGCGCCA
CCGTCTCGACCACTGTCCAGCCCTCGAGAGCTGTGTCCTTGATGAAACGC
GGCGGCAGGACAAATCCGTAGGCTCCACGATCCCTCAGCTCGATGGTGTA
CACATATTTGACACCAAGCGCGGCGCGGCTCCAGTCATCGGAGCCACCGC
CTGCGATTCCCAAAACTTCATGGGTGACCGCTGCCCTGTACGAAGTGCCC
GTCTTCTGGAGGATTCGCTCCGCGGCCAAACTGCTCACTCGCTGCAGGAC
ACTGGCATCCTTGACCTTGACGGCCTTGTAGGCCCACGGATAAACAATCA
TCTGTCCGTAGCTGTGGAAGGTCAAATACGATTCCAGATTGTACTTCCGC
TTGGCCAAAAACTCGGCCACCGCTCGCGTTTCCCGCTCCGAAGCTGGCGC
GGATCCGCGGTACGTATCACTGCACGGATTCGTCGACGAGCCATAGCCAT
TCCAGCCGATGTCGAAGTTACGGTTGAGATCCACACCGCTGCACTGGGCG
CGACGCGATGGCGAGCGATTCTTGCGCCACAGGCGATTCGTTGTTCGACT
GTACTCGTAGCCATCGGGATTCATCACTGGCATTATGTACCAGGTGAGGC
CGCGAATGTGCGCCGGCTGGTTCTCCCAGTCGGACATCAGCTGGTACAGG
ATGAAGGTCACCGTCGCGGGGCTGATCCATTCGCGGGCGTGGATGCCGCC
GTCGATCCACACCTTCTTGTTCTCGCGGGGATTCTCCGAGATTCTAAGCA
CTTTCAGATCGCGTCCCTCGGCCGTTTGGCCAATGGTGTATAGTCGCACG
ATGTTGGGGAATTTGGTGCGGATCTCCCGCATAAAGCTATAGATGGTCTC
CAGATCGTGATAGTCCTTCCAGTGCATGCTGCT

BO12761.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-PA 1338 CG3097-RA 421..1335 933..19 4575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-RA 1983 CG3097-RA 830..1744 933..19 4575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5766094..5766871 19..796 3890 100 Plus
X 23542271 X 5767074..5767213 794..933 700 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:30:12 has no hits.

BO12761.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:08 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-PA 421..1338 16..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:11 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-PA 421..1338 16..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:14 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 830..1748 15..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:48 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 830..1748 15..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:48 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5766090..5766868 15..793 99 <- Plus
X 5767074..5767213 794..933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:14 Download gff for BO12761.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5660123..5660901 15..793 99 <- Plus
arm_X 5661107..5661246 794..933 100   Plus

BO12761.5prime Sequence

916 bp (843 high quality bases) assembled on 2006-05-08

> BO12761.5prime
GAAGTTATCAGTCGACATGACGCAAAAAACTATGTTGCTGCAGTTGCTGC
TCCTTGTGGCAGCCGTAGCAGCCAGCTTGGCCAACGAGTTGCCCTCCAAT
CTCACACTGCTGGATGCCAACGAGATACCGCAACGGTACGATGAGGCGCA
GCTCTGGAGGATCTACAACATCTCGGAGGCGATGCAAAAGCGTGTGCCCG
TGGGCCAAATGCTGGAGCAGAAGTTCGGTGGCAATATCTGGAAGGAGAAC
TCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCCGCCCG
CAGCTTTCTATCCGCCCATCGTCTGGATCCCCAGATTCTCTCCCACAACA
TTCAATCCATGATCGACGAGGAGCTTCTCGAAGGCATTCAGTCCAGTTCG
TTTGGTCACGGAAGGAGAACGAAAAAGGCCGCCAGGAGCAGCATGCACTG
GAAGGACTATCACGATCTGGAGACCATCTATAGCTTTATGCGGGAGATCC
GCACCAAATTCCCCAACATCGTGCGACTATACACCATTGGCCAAACGGCC
GAGGGACGCGATCTGAAAGTGCTTAGAATCTCGGAGAATCCCCGCGAGAA
CAAGAAGGTGTGGATCGACGGCGGCATCCACGCCCGCGAATGGATCAGCC
CCGCGACGGTGACCTTCATCCTGTACCAGCTGATGTCCGACTGGGAGAAC
CAGCCGGCGCACATTCGCGGCCTCACCTGGTACATAATGCCAGTGATGAA
TCCCGATGGCTACGAGTACAGTCGAACAACGAATCGCCTGTGGCGCAAGA
ATCGCTCGCCATCGCGTCGCGCCCAGTGCAGCGGTGTGGATCTCAACCGT
AACTTCCACATCGGCTGGAATGGCTATGGCTCGTCGACGAATCCGTGCAG
TGATACGTACCGCGGA

BO12761.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-PA 1338 CG3097-RA 1..900 17..916 4475 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-RA 1983 CG3097-RA 410..1309 17..916 4485 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5767289..5767694 422..17 2030 100 Minus
X 23542271 X 5766529..5766871 916..574 1700 99.7 Minus
X 23542271 X 5767074..5767227 576..423 770 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:01:56 has no hits.

BO12761.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:09 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:12 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:45 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 405..1308 13..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:55 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 405..1308 13..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:55 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5766530..5766868 577..915 99 <- Minus
X 5767074..5767227 423..576 100 <- Minus
X 5767289..5767699 13..422 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:45 Download gff for BO12761.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5660563..5660901 577..915 99 <- Minus
arm_X 5661107..5661260 423..576 100 <- Minus
arm_X 5661322..5661732 13..422 99   Minus

BO12761.complete Sequence

1369 bp assembled on 2006-10-11

GenBank Submission: FJ632554

> BO12761.complete
GAAGTTATCAGTCGACATGACGCAAAAAACTATGTTGCTGCAGTTGCTGC
TCCTTGTGGCAGCCGTAGCAGCCAGCTTGGCCAACGAGTTGCCCTCCAAT
CTCACACTGCTGGATGCCAACGAGATACCGCAACGGTACGATGAGGCGCA
GCTCTGGAGGATCTACAACATCTCGGAGGCGATGCAAAAGCGTGTGCCCG
TGGGCCAAATGCTGGAGCAGAAGTTCGGTGGCAATATCTGGAAGGAGAAC
TCCAAGTTTCTGGACATCTCCATTGCCAGGGATCAACTGAAGGCCGCCCG
CAGCTTTCTATCCGCCCATCGTCTGGATCCCCAGATTCTCTCCCACAACA
TTCAATCCATGATCGACGAGGAGCTTCTCGAAGGCATTCAGTCCAGTTCG
TTTGGTCACGGAAGGAGAACGAAAAAGGCCGCCAGGAGCAGCATGCACTG
GAAGGACTATCACGATCTGGAGACCATCTATAGCTTTATGCGGGAGATCC
GCACCAAATTCCCCAACATCGTGCGACTATACACCATTGGCCAAACGGCC
GAGGGACGCGATCTGAAAGTGCTTAGAATCTCGGAGAATCCCCGCGAGAA
CAAGAAGGTGTGGATCGACGGCGGCATCCACGCCCGCGAATGGATCAGCC
CCGCGACGGTGACCTTCATCCTGTACCAGCTGATGTCCGACTGGGAGAAC
CAGCCGGCGCACATTCGCGGCCTCACCTGGTACATAATGCCAGTGATGAA
TCCCGATGGCTACGAGTACAGTCGAACAACGAATCGCCTGTGGCGCAAGA
ATCGCTCGCCATCGCGTCGCGCCCAGTGCAGCGGTGTGGATCTCAACCGT
AACTTCGACATCGGCTGGAATGGCTATGGCTCGTCGACGAATCCGTGCAG
TGATACGTACCGCGGATCCGCGCCAGCTTCGGAGCGGGAAACGCGAGCGG
TGGCCGAGTTTTTGGCCAAGCGGAAGTACAATCTGGAATCGTATTTGACC
TTCCACAGCTACGGACAGATGATTGTTTATCCGTGGGCCTACAAGGCCGT
CAAGGTCAAGGATGCCAGTGTCCTGCAGCGAGTGAGCAGTTTGGCCGCGG
AGCGAATCCTCCAGAAGACGGGCACTTCGTACAGGGCAGCGGTCACCCAT
GAAGTTTTGGGAATCGCAGGCGGTGGCTCCGATGACTGGAGCCGCGCCGC
GCTTGGTGTCAAATATGTGTACACCATCGAGCTGAGGGATCGTGGAGCCT
ACGGATTTGTCCTGCCGCCGCGTTTCATCAAGGACACAGCTCTCGAGGGC
TGGACAGTGGTCGAGACGGTGGCGCAGGCTATTGGCCCCAGCTCGTCCGG
TGCAAGCTTTCTAGACCAT

BO12761.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-RA 1338 CG3097-PA 1..1335 17..1351 6675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-RA 1983 CG3097-RA 410..1744 17..1351 6675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5766094..5766871 1351..574 3890 100 Minus
X 23542271 X 5767289..5767694 422..17 2030 100 Minus
X 23542271 X 5767074..5767227 576..423 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:22:33 has no hits.

BO12761.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:33 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 1..1338 17..1354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:12 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 404..1747 13..1355 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:20 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 410..1744 17..1353 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:33 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 404..1747 13..1355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:00 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
CG3097-RA 410..1744 17..1353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:00 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
X 5766091..5766868 577..1353 99 <- Minus
X 5767074..5767227 423..576 100 <- Minus
X 5767289..5767694 17..422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:20 Download gff for BO12761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5660124..5660901 577..1353 99 <- Minus
arm_X 5661107..5661260 423..576 100 <- Minus
arm_X 5661322..5661727 17..422 100   Minus

BO12761.pep Sequence

Translation from 16 to 1369

> BO12761.pep
MTQKTMLLQLLLLVAAVAASLANELPSNLTLLDANEIPQRYDEAQLWRIY
NISEAMQKRVPVGQMLEQKFGGNIWKENSKFLDISIARDQLKAARSFLSA
HRLDPQILSHNIQSMIDEELLEGIQSSSFGHGRRTKKAARSSMHWKDYHD
LETIYSFMREIRTKFPNIVRLYTIGQTAEGRDLKVLRISENPRENKKVWI
DGGIHAREWISPATVTFILYQLMSDWENQPAHIRGLTWYIMPVMNPDGYE
YSRTTNRLWRKNRSPSRRAQCSGVDLNRNFDIGWNGYGSSTNPCSDTYRG
SAPASERETRAVAEFLAKRKYNLESYLTFHSYGQMIVYPWAYKAVKVKDA
SVLQRVSSLAAERILQKTGTSYRAAVTHEVLGIAGGGSDDWSRAALGVKY
VYTIELRDRGAYGFVLPPRFIKDTALEGWTVVETVAQAIGPSSSGASFLD
H

BO12761.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3097-PA 445 CG3097-PA 1..445 1..445 2318 100 Plus
CG3108-PA 1132 CG3108-PA 693..1112 17..439 854 42.8 Plus
CG42264-PA 634 CG42264-PA 218..633 39..439 617 32.9 Plus
CG42264-PB 521 CG42264-PB 77..520 32..439 611 33.2 Plus
CG18585-PB 422 CG18585-PB 3..395 6..418 586 32.7 Plus