Clone Sequence Records
BO12762.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-09
> BO12762.3prime
ATGGTCTAGAAAGCTTGCGTGAACTAACTCCGACAGTTTTTGACGCCTAA
ACTCCTTTCTCGCCTCGTCCAGAAGCACATTGTGCAGCAGATTCCGGTTC
TGAGAATGATCCGCCGCCAGCGAAGGGTAGGGATTGCCCCGAAGCTCCAG
CACAGACCGCCTGTAGTAAATGCCAGGATACTCCCGAGGGGCTTTGTACA
TGCGAGTGTAGGACACATTGTAAGTCTCATAGCGCGGTACCAGCACCTTG
AAGAGCTTATGAACCAGTTGCTTTTCCAGCAGCCAATAGTCCGCCAGTTC
CATGGTGGCTTGGTGTCGGTCCCCATGGCGTATGGCATTGGAAATGAGCA
GTTCGGCGTAGCCACGAGCTTCATCGGCACGGTTGTAGAACAGTTCAATA
CGCTCGTGCTTCACCAACGCAGTGACGGTCTTACGCAGCTTCAGCAGCCG
ACCTTCCGGGCCATCGACATTCTTCAGATGGCGCTTGTTGGGCCTGACCG
CTATACGCAGCTGTGACATGAGCTTTGTTACATCGGCTTGATTCATGTCG
ACTGATAACT
BO12762.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13880-PA | 531 | mRpL17-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL17-RB | 1092 | CG13880-RB | 74..601 | 546..19 | 2640 | 100 | Minus |
| mRpL17-RA | 756 | CG13880-RA | 74..601 | 546..19 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 265111..265441 | 349..19 | 1655 | 100 | Minus |
| 3L | 28110227 | 3L | 264852..265049 | 546..349 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:11:40 has no hits.
BO12762.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:10 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13880-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:14 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13880-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:15 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 64..609 | 12..556 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:48 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 64..609 | 12..556 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:48 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 264842..265049 | 349..556 | 98 | -> | Minus |
| 3L | 265112..265449 | 12..348 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:15 Download gff for
BO12762.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 264842..265049 | 349..556 | 98 | -> | Minus |
| arm_3L | 265112..265449 | 12..348 | 99 | | Minus |
BO12762.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO12762.5prime
GAAGTTATCAGTCGACATGAATCAAGCCGATGTAACAAAGCTCATGTCAC
AGCTGCGTATAGCGGTCAGGCCCAACAAGCGCCATCTGAAGAATGTCGAT
GGCCCGGAAGGTCGGCTGCTGAAGCTGCGTAAGACCGTCACTGCGTTGGT
GAAGCACGAGCGTATTGAACTGTTCTACAACCGTGCCGATGAAGCTCGTG
GCTACGCCGAACTGCTCATTTCCAATGCCATACGCCATGGGGACCGACAC
CAAGCCACCATGGAACTGGCGGACTATTGGCTGCTGGAAAAGCAACTGGT
TCATAAGCTCTTCAAGGTGCTGGTACCGCGCTATGAGACTTACAATGTGT
CCTACACTCGCATGTACAAAGCCCCTCGGGAGTATCCTGGCATTTACTAC
AGGCGGTCTGTGCTGGAGCTTCGGGGCAATCCCTACCCTTCGCTGGCGGC
GGATCATTCTCAGAACCGGAATCTGCTGCACAATGTGCTTCTGGACGAGG
CGAGAAAGGAGTTTAGGCGTCAAAAACTGTCGGAGTTAGTTCACGCAAGC
TTTCTAGACC
BO12762.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13880-PA | 531 | mRpL17-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL17-RB | 1092 | CG13880-RB | 74..601 | 17..544 | 2640 | 100 | Plus |
| mRpL17-RA | 756 | CG13880-RA | 74..601 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 265111..265441 | 214..544 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 264852..265049 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:27:36 has no hits.
BO12762.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:11 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13880-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:15 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13880-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:22:11 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 64..609 | 7..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:40 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 64..609 | 7..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:40 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 264842..265049 | 7..214 | 98 | -> | Plus |
| 3L | 265112..265449 | 215..551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:22:11 Download gff for
BO12762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 264842..265049 | 7..214 | 98 | -> | Plus |
| arm_3L | 265112..265449 | 215..551 | 99 | | Plus |
BO12762.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ632555
> BO12762.complete
GAAGTTATCAGTCGACATGAATCAAGCCGATGTAACAAAGCTCATGTCAC
AGCTGCGTATAGCGGTCAGGCCCAACAAGCGCCATCTGAAGAATGTCGAT
GGCCCGGAAGGTCGGCTGCTGAAGCTGCGTAAGACCGTCACTGCGTTGGT
GAAGCACGAGCGTATTGAACTGTTCTACAACCGTGCCGATGAAGCTCGTG
GCTACGCCGAACTGCTCATTTCCAATGCCATACGCCATGGGGACCGACAC
CAAGCCACCATGGAACTGGCGGACTATTGGCTGCTGGAAAAGCAACTGGT
TCATAAGCTCTTCAAGGTGCTGGTACCGCGCTATGAGACTTACAATGTGT
CCTACACTCGCATGTACAAAGCCCCTCGGGAGTATCCTGGCATTTACTAC
AGGCGGTCTGTGCTGGAGCTTCGGGGCAATCCCTACCCTTCGCTGGCGGC
GGATCATTCTCAGAACCGGAATCTGCTGCACAATGTGCTTCTGGACGAGG
CGAGAAAGGAGTTTAGGCGTCAAAAACTGTCGGAGTTAGTTCACGCAAGC
TTTCTAGACCAT
BO12762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL17-RB | 531 | CG13880-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
| mRpL17-RA | 531 | CG13880-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL17-RB | 1092 | CG13880-RB | 74..601 | 17..544 | 2640 | 100 | Plus |
| mRpL17-RA | 756 | CG13880-RA | 74..601 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 265111..265441 | 214..544 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 264852..265049 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:03:34 has no hits.
BO12762.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:01 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:05 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 61..606 | 7..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:36 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 74..601 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:02 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 61..606 | 7..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:45 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL17-RA | 74..601 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:45 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 264852..265049 | 17..214 | 100 | -> | Plus |
| 3L | 265112..265441 | 215..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:36 Download gff for
BO12762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 264852..265049 | 17..214 | 100 | -> | Plus |
| arm_3L | 265112..265441 | 215..546 | 99 | | Plus |
BO12762.pep Sequence
Translation from 16 to 562
> BO12762.pep
MNQADVTKLMSQLRIAVRPNKRHLKNVDGPEGRLLKLRKTVTALVKHERI
ELFYNRADEARGYAELLISNAIRHGDRHQATMELADYWLLEKQLVHKLFK
VLVPRYETYNVSYTRMYKAPREYPGIYYRRSVLELRGNPYPSLAADHSQN
RNLLHNVLLDEARKEFRRQKLSELVHASFLDH
BO12762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL17-PB | 176 | CG13880-PB | 1..176 | 1..176 | 910 | 100 | Plus |
| mRpL17-PA | 176 | CG13880-PA | 1..176 | 1..176 | 910 | 100 | Plus |
