Clone BO12763 Report

Search the DGRC for BO12763

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG14265-RB
Protein status:BO12763.pep: validated full length
Sequenced Size:391

Clone Sequence Records

BO12763.5prime Sequence

389 bp (388 high quality bases) assembled on 2006-05-08

> BO12763.5prime
GAAGTTATCAGTCGACATGAAGCTCCACTGGCTGCTATTAGCAGTCGTAC
TGATCTGTGCCCTGTACAGCGCTACGGGCACCAGCCCCACCACGGAAACC
AGCACCAGCACCGAGTCGACCACCGCTACGGGCTCAAGCACTTCGACAAC
CTCGGCCAGCACCTCCTCCTCATCCTCGGACACCACCGAGGCCAGCAGCA
GCAGCAGCGATTCGTCCACCAGTTCCAGCAGCTCGTCCTCTAGCTCCAGC
AGTTCATCCAAGAAGAAGGCTGCCGCCAGAAGGAGGCGTGCCGCTCGCAG
GAGGCGTCGTGCCGCACGCAGGAGACGTGCTGCTGCCGCTCGCAGGCGCG
CCCAGCGCAGGCGCAACAGGGGTGCAAGCTTTCTAGACC

BO12763.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-PB 360 CG14265-RB 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-RB 557 CG14265-RB 35..391 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3236296..3236652 373..17 1785 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:15:02 has no hits.

BO12763.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:13 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-PB 1..360 17..374 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:17 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-PB 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:17:21 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 24..391 5..373 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:47:38 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 24..391 5..373 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:47:38 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3236296..3236663 5..373 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:17:21 Download gff for BO12763.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3130329..3130696 5..373 98   Minus

BO12763.3prime Sequence

389 bp (388 high quality bases) assembled on 2006-05-09

> BO12763.3prime
ATGGTCTAGAAAGCTTGCACCCCTGTTGCGCCTGCGCTGGGCGCGCCTGC
GAGCGGCAGCAGCACGTCTCCTGCGTGCGGCACGACGCCTCCTGCGAGCG
GCACGCCTCCTTCTGGCGGCAGCCTTCTTCTTGGATGAACTGCTGGAGCT
AGAGGACGAGCTGCTGGAACTGGTGGACGAATCGCTGCTGCTGCTGCTGG
CCTCGGTGGTGTCCGAGGATGAGGAGGAGGTGCTGGCCGAGGTTGTCGAA
GTGCTTGAGCCCGTAGCGGTGGTCGACTCGGTGCTGGTGCTGGTTTCCGT
GGTGGGGCTGGTGCCCGTAGCGCTGTACAGGGCACAGATCAGTACGACTG
CTAATAGCAGCCAGTGGAGCTTCATGTCGACTGATAACT

BO12763.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-PB 360 CG14265-RB 1..357 375..19 1785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-RB 557 CG14265-RB 35..391 375..19 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3236296..3236652 19..375 1785 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:16:18 has no hits.

BO12763.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:12 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-PB 1..360 18..375 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:16 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-PB 1..360 18..375 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:01 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 24..391 19..387 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:07 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 24..391 19..387 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:07 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3236296..3236663 19..387 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:01 Download gff for BO12763.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3130329..3130696 19..387 98   Plus

BO12763.complete Sequence

391 bp assembled on 2006-10-11

GenBank Submission: FJ632556

> BO12763.complete
GAAGTTATCAGTCGACATGAAGCTCCACTGGCTGCTATTAGCAGTCGTAC
TGATCTGTGCCCTGTACAGCGCTACGGGCACCAGCCCCACCACGGAAACC
AGCACCAGCACCGAGTCGACCACCGCTACGGGCTCAAGCACTTCGACAAC
CTCGGCCAGCACCTCCTCCTCATCCTCGGACACCACCGAGGCCAGCAGCA
GCAGCAGCGATTCGTCCACCAGTTCCAGCAGCTCGTCCTCTAGCTCCAGC
AGTTCATCCAAGAAGAAGGCTGCCGCCAGAAGGAGGCGTGCCGCTCGCAG
GAGGCGTCGTGCCGCACGCAGGAGACGTGCTGCTGCCGCTCGCAGGCGCG
CCCAGCGCAGGCGCAACAGGGGTGCAAGCTTTCTAGACCAT

BO12763.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-RB 360 CG14265-PB 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-RB 557 CG14265-RB 35..391 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3236296..3236652 373..17 1785 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:36:02 has no hits.

BO12763.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:07:02 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:48 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 20..387 5..373 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:31 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 35..391 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:02 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 20..387 5..373 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:50 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
CG14265-RB 35..391 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:50 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
X 3236294..3236652 17..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:31 Download gff for BO12763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3130327..3130685 17..375 99   Minus

BO12763.pep Sequence

Translation from 16 to 391

> BO12763.pep
MKLHWLLLAVVLICALYSATGTSPTTETSTSTESTTATGSSTSTTSASTS
SSSSDTTEASSSSSDSSTSSSSSSSSSSSSSKKKAAARRRRAARRRRRAA
RRRRAAAARRRAQRRRNRGASFLDH

BO12763.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14265-PB 119 CG14265-PB 1..119 1..119 556 100 Plus
CG14453-PA 133 CG14453-PA 1..117 1..118 238 49.2 Plus
CG32453-PB 120 CG32453-PB 1..103 1..118 205 46.6 Plus
CG32453-PA 120 CG32453-PA 1..103 1..118 205 46.6 Plus
CG14454-PB 120 CG14454-PB 1..103 1..118 205 46.6 Plus
CG14453-PA 133 CG14453-PA 44..125 18..118 181 45.1 Plus