Clone Sequence Records
BO12765.complete Sequence
538 bp assembled on 2010-02-09
GenBank Submission: FJ632557
> BO12765.complete
GAAGTTATCAGTCGACATGGCAGCCACATTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACCAT
BO12765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc4-RA | 507 | CG5972-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc4-RA | 712 | CG5972-RA | 118..621 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6125249..6125752 | 17..520 | 2520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:21:03 has no hits.
BO12765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:51 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc-p20-RA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:19 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc-p20-RA | 112..615 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:26 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 118..621 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:58 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arc-p20-RA | 112..615 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:22 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 118..621 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:22 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6125249..6125752 | 17..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:26 Download gff for
BO12765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6125249..6125752 | 17..522 | 99 | | Plus |
BO12765.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12765.3prime
ATGGTCTAGAAAGCTTGCGAACCGTTTGAGGAACTCCTCGGCGCAGGTGC
GTGCCCTGGCATTGACCGCCAGTTTCATTTCGCTGATCTCCTTGTCGATC
TCCTCCATGAAGCTAATGACAAAGTCCACCAGTTTGTGCTTATACATCTG
CTCCGTGTGGAAGTTGGTGATGAGGAAGCTTATGTCGTAGCCCTCGATGG
GCTTGCGGCGCAGTATGACGAACGACTCGGCGCGTCGCATCATGAACCTG
GTGAACTTGTGGCACAGTATGCGCTCAATCTCGTCGGCCTGCTTCACGGC
GATGCTCACGCGCACCGAGTTAATGGACGGCTCGATCAGCACCTTCTCCC
GCTCGTTGCGCGACACGACGACGGGCGTGAGCACCAGCTCCTTGCTGGAA
CAGATCTCCACCTCCGGCTTGTTGTGCCGCTCCACCACCTGCGAGGGGAA
GTCCTGCAGGCACATCGCCGCCGTCAGCGAGTGTCGCACGGCGGTCAGGT
AGGGCTTCAATGTGGCTGCCATGTCGACTGATAACT
BO12765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5972-PA | 507 | Arc-p20-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc4-RA | 712 | CG5972-RA | 118..621 | 522..19 | 2520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6125249..6125752 | 522..19 | 2520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:42:33 has no hits.
BO12765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:14 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5972-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:19 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5972-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:42:20 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 110..621 | 19..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:43 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 110..621 | 19..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:43 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6125241..6125752 | 19..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:42:20 Download gff for
BO12765.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6125241..6125752 | 19..530 | 99 | | Minus |
BO12765.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12765.5prime
GAAGTTATCAGTCGACATGGCAGCCACATTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACC
BO12765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5972-PA | 507 | Arc-p20-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc4-RA | 712 | CG5972-RA | 118..621 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6125249..6125752 | 17..520 | 2520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:52:35 has no hits.
BO12765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:15 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5972-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:20 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5972-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:20 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 110..621 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:27 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc4-RA | 110..621 | 9..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:27 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6125241..6125752 | 9..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:20 Download gff for
BO12765.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6125241..6125752 | 9..520 | 99 | | Plus |
BO12765.pep Sequence
Translation from 16 to 538
> BO12765.pep
MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTP
VVVSRNEREKVLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAES
FVILRRKPIEGYDISFLITNFHTEQMYKHKLVDFVISFMEEIDKEISEMK
LAVNARARTCAEEFLKRFASFLDH
BO12765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc4-PA | 168 | CG5972-PA | 1..168 | 1..168 | 844 | 100 | Plus |
