Clone BO12767 Report

Search the DGRC for BO12767

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG6055-RA
Protein status:BO12767.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO12767.5prime Sequence

689 bp (688 high quality bases) assembled on 2006-05-08

> BO12767.5prime
GAAGTTATCAGTCGACATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCT
TTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGATCCG
AGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGG
CGTGTCCCACTCGTACTTCTTCAGCTGGGAGCATGCTCCTACCCGCAGCC
TGGAGGTGGATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATG
GATGCCGTTTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAG
GATTGCCAGGGGCAATGTGCGATACATTTGGACCTCGGGCAGGAAGTGCA
ACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGT
TGGTTCTGGTCGGGATCGGGGGCAAAGATTGGACCCACTTCGCAGAGGAA
CACCGGCGATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCCGATA
ACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAAC
AACTTCTACAACGATGGCATCAAGTGGCACGACGTGGCCTGCCATCACAT
CAAGCCATTTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCT
CCCGGAACCCCAATGTCCGCTTGGCAAGCTTTCTAGACC

BO12767.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-PA 660 CG6055-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-RB 1034 CG6055-RB 87..743 17..673 3285 100 Plus
CG6055-RA 1087 CG6055-RA 140..796 17..673 3285 100 Plus
CG4115-RA 1115 CG4115-RA 307..376 201..270 185 84.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7471546..7472202 17..673 3285 100 Plus
3R 32079331 3R 12360375..12360444 201..270 185 84.3 Plus
2L 23513712 2L 4797160..4797219 592..533 180 86.7 Minus
3R 32079331 3R 12362803..12362913 554..664 180 77.5 Plus
Blast to na_te.dros performed on 2015-02-13 08:41:26 has no hits.

BO12767.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:19 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-PA 1..660 17..677 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:26 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-PA 1..660 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:41:16 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..801 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:51 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..801 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:51 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7471546..7472207 17..681 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:41:16 Download gff for BO12767.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7471546..7472207 17..681 99   Plus

BO12767.3prime Sequence

689 bp (688 high quality bases) assembled on 2006-05-09

> BO12767.3prime
ATGGTCTAGAAAGCTTGCCAAGCGGACATTGGGGTTCCGGGAGCGGACGA
AGTTCAACAGCTCATCGGAGTCCTCGCACACAAATGGCTTGATGTGATGG
CAGGCCACGTCGTGCCACTTGATGCCATCGTTGTAGAAGTTGTTCAGGAT
GGACAGGCAGCTCTCGTCGTTGCCCTGCGCGGCCTCCCGGTTATCGGGCT
GCGGCTGTTGGTATCCGCCCGTTGAAGACCAATCGCCGGTGTTCCTCTGC
GAAGTGGGTCCAATCTTTGCCCCCGATCCCGACCAGAACCAACCGTTCTC
ATTGGGAGGCTGCAGATCGGGCCTGTCGCAGCCAGCGAAGTTGCACTTCC
TGCCCGAGGTCCAAATGTATCGCACATTGCCCCTGGCAATCCTCTGCTTC
ACAAAGTCATTCTCCTGTGGCGTCTCCAGGGAAACGGCATCCATGCAGTG
CCTGCGGCAGATGTTCCTCGCATCCAGCCAATCCACCTCCAGGCTGCGGG
TAGGAGCATGCTCCCAGCTGAAGAAGTACGAGTGGGACACGCCCCTGGCA
TCCCGATAGCTGGCATGGCGCACCCGGTTGGCGCAACTCCTCGGATCGGG
CAGAGCCAGGCGACGTTGGGCCAGCGCCACGGTGGCACCAAAGGCCAGAA
ACATCAGTGCACGCAGCACAGACATGTCGACTGATAACT

BO12767.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-PA 660 CG6055-RA 1..657 675..19 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-RB 1034 CG6055-RB 87..743 675..19 3285 100 Minus
CG6055-RA 1087 CG6055-RA 140..796 675..19 3285 100 Minus
CG4115-RA 1115 CG4115-RA 307..376 491..422 185 84.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7471546..7472202 675..19 3285 100 Minus
3R 32079331 3R 12360375..12360444 491..422 185 84.3 Minus
2L 23513712 2L 4797160..4797219 100..159 180 86.7 Plus
3R 32079331 3R 12362803..12362913 138..28 180 77.5 Minus
Blast to na_te.dros performed on 2015-02-12 19:09:29 has no hits.

BO12767.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:18 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-PA 1..660 15..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:24 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-PA 1..660 15..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:39 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..801 11..675 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:19 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..801 11..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:19 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7471546..7472207 11..675 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:39 Download gff for BO12767.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7471546..7472207 11..675 99   Minus

BO12767.complete Sequence

691 bp assembled on 2006-10-11

GenBank Submission: FJ632558

> BO12767.complete
GAAGTTATCAGTCGACATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCT
TTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGATCCG
AGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGG
CGTGTCCCACTCGTACTTCTTCAGCTGGGAGCATGCTCCTACCCGCAGCC
TGGAGGTGGATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATG
GATGCCGTTTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAG
GATTGCCAGGGGCAATGTGCGATACATTTGGACCTCGGGCAGGAAGTGCA
ACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGT
TGGTTCTGGTCGGGATCGGGGGCAAAGATTGGACCCACTTCGCAGAGGAA
CACCGGCGATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCCGATA
ACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAAC
AACTTCTACAACGATGGCATCAAGTGGCACGACGTGGCCTGCCATCACAT
CAAGCCATTTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCT
CCCGGAACCCCAATGTCCGCTTGGCAAGCTTTCTAGACCAT

BO12767.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-RB 660 CG6055-PB 1..657 17..673 3285 100 Plus
CG6055-RA 660 CG6055-PA 1..657 17..673 3285 100 Plus
CG4115-RA 663 CG4115-PA 185..254 201..270 185 84.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-RB 1034 CG6055-RB 87..743 17..673 3285 100 Plus
CG6055-RA 1087 CG6055-RA 140..796 17..673 3285 100 Plus
CG4115-RA 1115 CG4115-RA 307..376 201..270 185 84.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7471546..7472202 17..673 3285 100 Plus
3R 32079331 3R 12360375..12360444 201..270 185 84.3 Plus
2L 23513712 2L 4797160..4797219 592..533 180 86.7 Minus
3R 32079331 3R 12362803..12362913 554..664 180 77.5 Plus
Blast to na_te.dros performed on 2014-11-28 01:17:54 has no hits.

BO12767.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:34 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 1..660 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:19 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 137..798 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:27 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..796 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:34 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 137..798 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:14 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
CG6055-RA 140..796 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:14 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7471546..7472202 17..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:27 Download gff for BO12767.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7471546..7472202 17..675 99   Plus

BO12767.pep Sequence

Translation from 16 to 691

> BO12767.pep
MSVLRALMFLAFGATVALAQRRLALPDPRSCANRVRHASYRDARGVSHSY
FFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDFVKQRIARGN
VRYIWTSGRKCNFAGCDRPDLQPPNENGWFWSGSGAKIGPTSQRNTGDWS
STGGYQQPQPDNREAAQGNDESCLSILNNFYNDGIKWHDVACHHIKPFVC
EDSDELLNFVRSRNPNVRLASFLDH

BO12767.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6055-PB 219 CG6055-PB 1..219 1..219 1209 100 Plus
CG6055-PA 219 CG6055-PA 1..219 1..219 1209 100 Plus
CG4115-PA 220 CG4115-PA 26..220 22..219 666 59.3 Plus
Clect27-PB 231 CG3244-PB 32..231 21..219 509 48.5 Plus
Clect27-PA 231 CG3244-PA 32..231 21..219 509 48.5 Plus