Clone Sequence Records
BO12767.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-05-08
> BO12767.5prime
GAAGTTATCAGTCGACATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCT
TTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGATCCG
AGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGG
CGTGTCCCACTCGTACTTCTTCAGCTGGGAGCATGCTCCTACCCGCAGCC
TGGAGGTGGATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATG
GATGCCGTTTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAG
GATTGCCAGGGGCAATGTGCGATACATTTGGACCTCGGGCAGGAAGTGCA
ACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGT
TGGTTCTGGTCGGGATCGGGGGCAAAGATTGGACCCACTTCGCAGAGGAA
CACCGGCGATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCCGATA
ACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAAC
AACTTCTACAACGATGGCATCAAGTGGCACGACGTGGCCTGCCATCACAT
CAAGCCATTTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCT
CCCGGAACCCCAATGTCCGCTTGGCAAGCTTTCTAGACC
BO12767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-PA | 660 | CG6055-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-RB | 1034 | CG6055-RB | 87..743 | 17..673 | 3285 | 100 | Plus |
CG6055-RA | 1087 | CG6055-RA | 140..796 | 17..673 | 3285 | 100 | Plus |
CG4115-RA | 1115 | CG4115-RA | 307..376 | 201..270 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7471546..7472202 | 17..673 | 3285 | 100 | Plus |
3R | 32079331 | 3R | 12360375..12360444 | 201..270 | 185 | 84.3 | Plus |
2L | 23513712 | 2L | 4797160..4797219 | 592..533 | 180 | 86.7 | Minus |
3R | 32079331 | 3R | 12362803..12362913 | 554..664 | 180 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:41:26 has no hits.
BO12767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:19 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-PA | 1..660 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:26 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-PA | 1..660 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:41:16 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..801 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:51 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..801 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:51 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7471546..7472207 | 17..681 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:41:16 Download gff for
BO12767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7471546..7472207 | 17..681 | 99 | | Plus |
BO12767.3prime Sequence
689 bp (688 high quality bases) assembled on 2006-05-09
> BO12767.3prime
ATGGTCTAGAAAGCTTGCCAAGCGGACATTGGGGTTCCGGGAGCGGACGA
AGTTCAACAGCTCATCGGAGTCCTCGCACACAAATGGCTTGATGTGATGG
CAGGCCACGTCGTGCCACTTGATGCCATCGTTGTAGAAGTTGTTCAGGAT
GGACAGGCAGCTCTCGTCGTTGCCCTGCGCGGCCTCCCGGTTATCGGGCT
GCGGCTGTTGGTATCCGCCCGTTGAAGACCAATCGCCGGTGTTCCTCTGC
GAAGTGGGTCCAATCTTTGCCCCCGATCCCGACCAGAACCAACCGTTCTC
ATTGGGAGGCTGCAGATCGGGCCTGTCGCAGCCAGCGAAGTTGCACTTCC
TGCCCGAGGTCCAAATGTATCGCACATTGCCCCTGGCAATCCTCTGCTTC
ACAAAGTCATTCTCCTGTGGCGTCTCCAGGGAAACGGCATCCATGCAGTG
CCTGCGGCAGATGTTCCTCGCATCCAGCCAATCCACCTCCAGGCTGCGGG
TAGGAGCATGCTCCCAGCTGAAGAAGTACGAGTGGGACACGCCCCTGGCA
TCCCGATAGCTGGCATGGCGCACCCGGTTGGCGCAACTCCTCGGATCGGG
CAGAGCCAGGCGACGTTGGGCCAGCGCCACGGTGGCACCAAAGGCCAGAA
ACATCAGTGCACGCAGCACAGACATGTCGACTGATAACT
BO12767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-PA | 660 | CG6055-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-RB | 1034 | CG6055-RB | 87..743 | 675..19 | 3285 | 100 | Minus |
CG6055-RA | 1087 | CG6055-RA | 140..796 | 675..19 | 3285 | 100 | Minus |
CG4115-RA | 1115 | CG4115-RA | 307..376 | 491..422 | 185 | 84.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7471546..7472202 | 675..19 | 3285 | 100 | Minus |
3R | 32079331 | 3R | 12360375..12360444 | 491..422 | 185 | 84.3 | Minus |
2L | 23513712 | 2L | 4797160..4797219 | 100..159 | 180 | 86.7 | Plus |
3R | 32079331 | 3R | 12362803..12362913 | 138..28 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:09:29 has no hits.
BO12767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:18 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-PA | 1..660 | 15..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:24 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-PA | 1..660 | 15..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:39 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..801 | 11..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:19 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..801 | 11..675 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:19 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7471546..7472207 | 11..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:39 Download gff for
BO12767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7471546..7472207 | 11..675 | 99 | | Minus |
BO12767.complete Sequence
691 bp assembled on 2006-10-11
GenBank Submission: FJ632558
> BO12767.complete
GAAGTTATCAGTCGACATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCT
TTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGATCCG
AGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGG
CGTGTCCCACTCGTACTTCTTCAGCTGGGAGCATGCTCCTACCCGCAGCC
TGGAGGTGGATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATG
GATGCCGTTTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAG
GATTGCCAGGGGCAATGTGCGATACATTTGGACCTCGGGCAGGAAGTGCA
ACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGT
TGGTTCTGGTCGGGATCGGGGGCAAAGATTGGACCCACTTCGCAGAGGAA
CACCGGCGATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCCGATA
ACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAAC
AACTTCTACAACGATGGCATCAAGTGGCACGACGTGGCCTGCCATCACAT
CAAGCCATTTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCT
CCCGGAACCCCAATGTCCGCTTGGCAAGCTTTCTAGACCAT
BO12767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-RB | 660 | CG6055-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG6055-RA | 660 | CG6055-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG4115-RA | 663 | CG4115-PA | 185..254 | 201..270 | 185 | 84.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-RB | 1034 | CG6055-RB | 87..743 | 17..673 | 3285 | 100 | Plus |
CG6055-RA | 1087 | CG6055-RA | 140..796 | 17..673 | 3285 | 100 | Plus |
CG4115-RA | 1115 | CG4115-RA | 307..376 | 201..270 | 185 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7471546..7472202 | 17..673 | 3285 | 100 | Plus |
3R | 32079331 | 3R | 12360375..12360444 | 201..270 | 185 | 84.3 | Plus |
2L | 23513712 | 2L | 4797160..4797219 | 592..533 | 180 | 86.7 | Minus |
3R | 32079331 | 3R | 12362803..12362913 | 554..664 | 180 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:17:54 has no hits.
BO12767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:34 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 1..660 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:19 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 137..798 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:27 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..796 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:34 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 137..798 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:14 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6055-RA | 140..796 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:14 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7471546..7472202 | 17..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:27 Download gff for
BO12767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7471546..7472202 | 17..675 | 99 | | Plus |
BO12767.pep Sequence
Translation from 16 to 691
> BO12767.pep
MSVLRALMFLAFGATVALAQRRLALPDPRSCANRVRHASYRDARGVSHSY
FFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDFVKQRIARGN
VRYIWTSGRKCNFAGCDRPDLQPPNENGWFWSGSGAKIGPTSQRNTGDWS
STGGYQQPQPDNREAAQGNDESCLSILNNFYNDGIKWHDVACHHIKPFVC
EDSDELLNFVRSRNPNVRLASFLDH
BO12767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6055-PB | 219 | CG6055-PB | 1..219 | 1..219 | 1209 | 100 | Plus |
CG6055-PA | 219 | CG6055-PA | 1..219 | 1..219 | 1209 | 100 | Plus |
CG4115-PA | 220 | CG4115-PA | 26..220 | 22..219 | 666 | 59.3 | Plus |
Clect27-PB | 231 | CG3244-PB | 32..231 | 21..219 | 509 | 48.5 | Plus |
Clect27-PA | 231 | CG3244-PA | 32..231 | 21..219 | 509 | 48.5 | Plus |