Clone Sequence Records
BO12769.3prime Sequence
840 bp (824 high quality bases) assembled on 2006-05-09
> BO12769.3prime
ATGGTCTAGAAAGCTTGCAAACCTTTTATCGCCAAACTGTAGCCACACCT
TTACGTATGGATCAGATTTTCCGTTGATATCTTTGGCTTTCAAATTTCTC
GCTTTAATTAGTGTTAAAGTCAAAATTGAGTTCGACGGGTGATAGCAAAG
GGAGGAGAGAAGTTCTCCGCATTTATCCTTTGCAGGGGGCTTTAAAGCCT
TCCAAAAAGATTGTTTTCCAGCAAAGTCAACCTGACATAAAGGAAGAAAT
ACTTCCCCTATGGAGTCATCTCTTGAAAACCGATCGTAATCAAAAACATG
TAAGTGTAAAACACGTGATTGAAGTTTTTGAATTGGAAAACCTTCAAAAT
AAAATGTTTCATTCCATCGTGGATTAAGGGTTCGCCGTTTTATTTTGGTT
TCCAATCTATGCTTTTTATCTGGTAACAGCGTTACACGAACATATGGATC
GGAAGTACCACTCAAATCTTTTGCTGGAAGCTCTTTTCCTTGAAGAACTT
TCAAAATTAATGTTGTGTTTTGGAAATCATACTCCAAGGAGAAATGTATT
TGCCCAACATTTTCACTTGGATCGGTGCTATCCAAATACATGTCTGTCAT
TGAGATACTTTTATTTGCAGAATCTTTCGTAGTCCCATCTCCAGGATTTC
CAACTGAAGAAATGATTTGCGGTTTTGTTTGAGAGGCCCCCGACCCGCCA
ATCAAAGGAGTTCTAAGACTTAAAAATCCATTTAATTTCCTGTTAATATT
ATTTTGGAGAGGAGTCGTGATAGCATGTGCCACCGGCACTTGCGGTTTTG
TAGGTGGATTACCAGAGTCAACAATATCCTGAGCAGCCCG
BO12769.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2381-PB | 984 | Syt7-RB | 160..981 | 840..19 | 4110 | 100 | Minus |
| CG2381-PC | 1251 | Syt7-RC | 160..978 | 840..22 | 4095 | 100 | Minus |
| CG2381-PA | 1251 | Syt7-RA | 160..978 | 840..22 | 4095 | 100 | Minus |
| CG2381-PE | 1251 | Syt7-RE | 160..978 | 840..22 | 4095 | 100 | Minus |
| CG2381-PG | 1251 | Syt7-RG | 160..978 | 840..22 | 4095 | 100 | Minus |
| CG2381-PF | 852 | Syt7-RF | 1..579 | 600..22 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RB | 2684 | CG2381-RB | 204..1025 | 840..19 | 4110 | 100 | Minus |
| Syt7-RM | 2830 | CG2381-RM | 285..1103 | 840..22 | 4095 | 100 | Minus |
| Syt7-RA | 2794 | CG2381-RA | 249..1067 | 840..22 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 311..615 | 1525 | 100 | Plus |
| 4 | 1348131 | 4 | 281724..281894 | 63..233 | 855 | 100 | Plus |
| 4 | 1348131 | 4 | 302386..302527 | 698..839 | 710 | 100 | Plus |
| 4 | 1348131 | 4 | 281946..282028 | 230..312 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 302242..302324 | 616..698 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 280497..280538 | 22..63 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:37:37 has no hits.
BO12769.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:21 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2381-PB | 160..984 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:31 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2381-PB | 160..984 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:50:48 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 204..1028 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:06 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 204..1028 | 15..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:06 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 302386..302527 | 698..840 | 99 | | Plus |
| 4 | 302242..302323 | 616..697 | 100 | <- | Plus |
| 4 | 280497..280537 | 18..62 | 91 | <- | Plus |
| 4 | 281724..281892 | 63..231 | 100 | <- | Plus |
| 4 | 281948..282028 | 232..312 | 100 | <- | Plus |
| 4 | 282436..282738 | 313..615 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:50:48 Download gff for
BO12769.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 322868..322949 | 616..697 | 100 | <- | Plus |
| arm_4 | 323012..323153 | 698..840 | 99 | | Plus |
| arm_4 | 301123..301163 | 18..62 | 91 | <- | Plus |
| arm_4 | 302350..302518 | 63..231 | 100 | <- | Plus |
| arm_4 | 302574..302654 | 232..312 | 100 | <- | Plus |
| arm_4 | 303062..303364 | 313..615 | 100 | <- | Plus |
BO12769.5prime Sequence
823 bp (795 high quality bases) assembled on 2006-05-08
> BO12769.5prime
GAAGTTATCAGTCGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTA
TATTGGGATTAATTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTG
TGGTGGAGGCATAAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGA
TGAGGAATCTAGTAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACT
CTGGTAATCCACCTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACG
ACTCCTCTCCAAAATAATATTAACAGGAAATTAAATGGATTTTTAAGTCT
TAGAACTCCTTTGATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAA
TCATTTCTTCAGTTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCA
AATAAAAGTATCTCAATGACAGACATGTATTTGGATAGCACCGATCCAAG
TGAAAATGTTGGGCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACA
CAACATTAATTTTGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGAT
TTGAGTGGTACTTCCGATCCATATGTTCGTGTAACGCTGTTACCAGATAA
AAAGCATAGATTGGAAACCAAAATAAAACGGCGAACCCTTAATCCACGAT
GGAATGAAACATTTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCA
CGTGTTTTACACTTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGA
CTCCATAGGGGAAGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAA
AACAATCTTTTTGGAAGGCTTTA
BO12769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2381-PB | 984 | Syt7-RB | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG2381-PC | 1251 | Syt7-RC | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG2381-PA | 1251 | Syt7-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG2381-PE | 1251 | Syt7-RE | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG2381-PG | 1251 | Syt7-RG | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG2381-PF | 852 | Syt7-RF | 1..408 | 416..823 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RI | 2596 | CG2381-RI | 102..911 | 14..823 | 4050 | 100 | Plus |
| Syt7-RM | 2830 | CG2381-RM | 123..932 | 14..823 | 4050 | 100 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..896 | 15..823 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 705..401 | 1525 | 100 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 178..14 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 318..177 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 786..704 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 400..318 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 281854..281894 | 823..783 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:36 has no hits.
BO12769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:23 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2381-PE | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:32 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2381-PG | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:52:29 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RI | 95..910 | 5..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:25 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RM | 118..931 | 8..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:25 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 281855..281892 | 785..822 | 100 | <- | Minus |
| 4 | 281948..282028 | 704..784 | 100 | <- | Minus |
| 4 | 282436..282738 | 401..703 | 100 | <- | Minus |
| 4 | 302242..302323 | 319..400 | 100 | <- | Minus |
| 4 | 302386..302526 | 178..318 | 100 | <- | Minus |
| 4 | 305016..305184 | 5..177 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:52:29 Download gff for
BO12769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 302574..302654 | 704..784 | 100 | <- | Minus |
| arm_4 | 302481..302518 | 785..822 | 100 | <- | Minus |
| arm_4 | 303062..303364 | 401..703 | 100 | <- | Minus |
| arm_4 | 322868..322949 | 319..400 | 100 | <- | Minus |
| arm_4 | 323012..323152 | 178..318 | 100 | <- | Minus |
| arm_4 | 325642..325810 | 5..177 | 97 | | Minus |
BO12769.complete Sequence
1015 bp assembled on 2006-10-11
GenBank Submission: FJ638707
> BO12769.complete
GAAGTTATCAGTCGACATGGCAAGCATAGTACTTATAGCTTGCTTGGCTA
TATTGGGATTAATTATTACAATCGCTCTTTTTCTGGCTGGAGGATACTTG
TGGTGGAGGCATAAAAGATCACAGTTACAGTTTATTGAACCAAATGAAGA
TGAGGAATCTAGTAGTTATAGTCTTCGGGCTGCTCAGGATATTGTTGACT
CTGGTAATCCACCTACAAAACCGCAAGTGCCGGTGGCACATGCTATCACG
ACTCCTCTCCAAAATAATATTAACAGGAAATTAAATGGATTTTTAAGTCT
TAGAACTCCTTTGATTGGCGGGTCGGGGGCCTCTCAAACAAAACCGCAAA
TCATTTCTTCAGTTGGAAATCCTGGAGATGGGACTACGAAAGATTCTGCA
AATAAAAGTATCTCAATGACAGACATGTATTTGGATAGCACCGATCCAAG
TGAAAATGTTGGGCAAATACATTTCTCCTTGGAGTATGATTTCCAAAACA
CAACATTAATTTTGAAAGTTCTTCAAGGAAAAGAGCTTCCAGCAAAAGAT
TTGAGTGGTACTTCCGATCCATATGTTCGTGTAACGCTGTTACCAGATAA
AAAGCATAGATTGGAAACCAAAATAAAACGGCGAACCCTTAATCCACGAT
GGAATGAAACATTTTATTTTGAAGGTTTTCCAATTCAAAAACTTCAATCA
CGTGTTTTACACTTACATGTTTTTGATTACGATCGGTTTTCAAGAGATGA
CTCCATAGGGGAAGTATTTCTTCCTTTATGTCAGGTTGACTTTGCTGGAA
AACAATCTTTTTGGAAGGCTTTAAAGCCCCCTGCAAAGGATAAATGCGGA
GAACTTCTCTCCTCCCTTTGCTATCACCCGTCGAACTCAATTTTGACTTT
AACACTAATTAAAGCGAGAAATTTGAAAGCCAAAGATATCAACGGAAAAT
CTGATCCATACGTAAAGGTGTGGCTACAGTTTGGCGATAAAAGGTTTGCA
AGCTTTCTAGACCAT
BO12769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RB | 984 | CG2381-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
| Syt7-RM | 1251 | CG2381-PM | 1..978 | 17..994 | 4890 | 100 | Plus |
| Syt7-RA | 1251 | CG2381-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-RB | 2684 | CG2381-RB | 43..1025 | 15..997 | 4915 | 100 | Plus |
| Syt7-RM | 2830 | CG2381-RM | 123..1103 | 14..994 | 4905 | 100 | Plus |
| Syt7-RA | 2794 | CG2381-RA | 88..1067 | 15..994 | 4900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 282434..282738 | 705..401 | 1525 | 100 | Minus |
| 4 | 1348131 | 4 | 281724..281894 | 953..783 | 855 | 100 | Minus |
| 4 | 1348131 | 4 | 305015..305179 | 178..14 | 825 | 100 | Minus |
| 4 | 1348131 | 4 | 302386..302527 | 318..177 | 710 | 100 | Minus |
| 4 | 1348131 | 4 | 281946..282028 | 786..704 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 302242..302324 | 400..318 | 415 | 100 | Minus |
| 4 | 1348131 | 4 | 280497..280538 | 994..953 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:02:11 has no hits.
BO12769.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:37 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 1..984 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:55 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 105..1085 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:31 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 45..1025 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:38 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RH | 95..1088 | 5..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:32 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt7-RB | 45..1025 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:32 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 280492..280537 | 954..999 | 93 | <- | Minus |
| 4 | 281724..281892 | 785..953 | 100 | <- | Minus |
| 4 | 281948..282028 | 704..784 | 100 | <- | Minus |
| 4 | 282436..282738 | 401..703 | 100 | <- | Minus |
| 4 | 302242..302323 | 319..400 | 100 | <- | Minus |
| 4 | 302386..302526 | 178..318 | 100 | <- | Minus |
| 4 | 305016..305176 | 17..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:31 Download gff for
BO12769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 323012..323152 | 178..318 | 100 | <- | Minus |
| arm_4 | 325642..325802 | 17..177 | 100 | | Minus |
| arm_4 | 302574..302654 | 704..784 | 100 | <- | Minus |
| arm_4 | 303062..303364 | 401..703 | 100 | <- | Minus |
| arm_4 | 322868..322949 | 319..400 | 100 | <- | Minus |
| arm_4 | 301118..301163 | 954..999 | 93 | <- | Minus |
| arm_4 | 302350..302518 | 785..953 | 100 | <- | Minus |
BO12769.pep Sequence
Translation from 16 to 1015
> BO12769.pep
MASIVLIACLAILGLIITIALFLAGGYLWWRHKRSQLQFIEPNEDEESSS
YSLRAAQDIVDSGNPPTKPQVPVAHAITTPLQNNINRKLNGFLSLRTPLI
GGSGASQTKPQIISSVGNPGDGTTKDSANKSISMTDMYLDSTDPSENVGQ
IHFSLEYDFQNTTLILKVLQGKELPAKDLSGTSDPYVRVTLLPDKKHRLE
TKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV
FLPLCQVDFAGKQSFWKALKPPAKDKCGELLSSLCYHPSNSILTLTLIKA
RNLKAKDINGKSDPYVKVWLQFGDKRFASFLDH
BO12769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt7-PB | 327 | CG2381-PB | 1..327 | 1..327 | 1709 | 100 | Plus |
| Syt7-PM | 416 | CG2381-PM | 1..326 | 1..326 | 1703 | 100 | Plus |
| Syt7-PA | 416 | CG2381-PA | 1..326 | 1..326 | 1703 | 100 | Plus |
| Syt7-PI | 345 | CG2381-PI | 1..312 | 1..312 | 1622 | 100 | Plus |
| Syt7-PF | 283 | CG2381-PF | 1..193 | 134..326 | 1026 | 100 | Plus |
| Syt7-PM | 416 | CG2381-PM | 275..397 | 146..267 | 164 | 34.7 | Plus |
| Syt7-PA | 416 | CG2381-PA | 275..397 | 146..267 | 164 | 34.7 | Plus |
