Clone Sequence Records
BO12772.3prime Sequence
940 bp (835 high quality bases) assembled on 2006-05-08
> BO12772.3prime
ATGGTCTAGAAAGCTTGCAGCCATTTTGTCCTGCGTCTGTTGGCTCTTTT
TCCTCTGCTGCACAACACTGTCGATCCAGTCCGTGTATTCGGCCACGTTA
GTATAAACAGCCGGCTTACCGGCCATACCGCACTGTGTAAATCCGTAGCT
GACCACGCCGTAGGCCACCCACCGGGAGTGCTGTCTATCGAAGTACATCA
GAGGTCCACCGGAGTCGCCGGCACACGTGTCCTTCGCGAACTCTCCGCCG
GCACAGATTTGCTTGGGACCCAATCGCACTCCGAATCCCTCGAGAATCTT
GGTGCAGTTCTCATTGGAGACGTACGGAATGCGCAGCTTTAGCTTGATGG
GACTATGAATGTTGATGAAGTACTTGTTGAATAAATCCGTGCGACCCCAT
CCGGAAACGGAGAACATCTGGCCCTCGGCCAATGTCAGTGGCTCGGATTT
GTTGGGCAAACAGATGGGCATGACGAAGTGAGTGAAGGACACGGGATGCT
TTAGCCGGATAATGGCAATGTCATTGTACTTGTAGTTCGAGAACTCCTTG
TACTCCGGATGCACATGGATCTTTTCGTAGGCAATATCCAAAGCGGCGTC
TGCACAGCTCAAATAGTTTGGCTCCTCGATGCAGTCGGGTTCAGTTTTCA
CGTTGAATTCGCCCAAACGCACATGCTTTAATCCTTGGCGATCACGAACT
CCCTCGCCTTGAACACAATGGGCAGCTGTTAGGATATGACGATCATCGAT
TAGGGCTCCACTGCAACCGTAGTCATTCGAGTTGTAGACAAGCAGTGCCA
GCCAAGGAAACTCATCCAGTTCGGCGATTTCCCCTCCGTAAATCCTATTA
GTCACTTGTTTGCCGCACTCATTGAGTAAATTGAAATCCGAACTTGGCTC
CACCGTTTGAATGCGCCGCTTGAGTTTCTTCCGCTTGAAT
BO12772.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-PA | 1275 | CG9737-RA | 351..1272 | 940..19 | 4560 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-RA | 1635 | CG9737-RA | 463..1384 | 940..19 | 4580 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30241519..30241880 | 19..380 | 1810 | 100 | Plus |
3R | 32079331 | 3R | 30242145..30242443 | 381..679 | 1495 | 100 | Plus |
3R | 32079331 | 3R | 30242683..30242850 | 773..940 | 795 | 98.2 | Plus |
3R | 32079331 | 3R | 30242508..30242604 | 680..776 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:08:26 has no hits.
BO12772.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:28 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-PA | 351..1275 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:40 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-PA | 351..1275 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:27 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 463..1384 | 19..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:49 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 463..1384 | 19..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:49 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30241519..30241880 | 19..380 | 100 | <- | Plus |
3R | 30242145..30242443 | 381..679 | 100 | <- | Plus |
3R | 30242508..30242604 | 680..776 | 100 | <- | Plus |
3R | 30242687..30242850 | 777..940 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:27 Download gff for
BO12772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26067241..26067602 | 19..380 | 100 | <- | Plus |
arm_3R | 26067867..26068165 | 381..679 | 100 | <- | Plus |
arm_3R | 26068230..26068326 | 680..776 | 100 | <- | Plus |
arm_3R | 26068409..26068572 | 777..940 | 98 | | Plus |
BO12772.5prime Sequence
899 bp (849 high quality bases) assembled on 2006-05-08
> BO12772.5prime
GAAGTTATCAGTCGACATGCTCGGTTCGGTTCTGCGACTATGGATACTCT
TCGGCTGTTTCTACCGCTTCTTGGCTCTGGCCGAGGTCCTGCAGGAGTGC
GACATTCCCAATGAGACGAAGAGGGGAGTTTGCCTGGAGGTCAGCAGGTG
CAAGGCGTATCTACAGGTGCGGAATGCCACCAATTTGCCGGCGGAGAAGG
TTAATTTCCTGAAGAAGGTGCAGTGCGAGGTGGAGCAGCAAGTGTCGGAG
GCGCAGGGTTCGTACGAATCACTGGTTTGCTGCCCGGCGAATGGCCAGGA
TTACCTATTTCCCGTGCTACAATTCTCTAAGTTCGAGTACCGAAGATTTC
TGGATGTTACCGCTCGATTCAAGCGGAAGAAACTCAAGCGGCGCATTCAA
ACGGTGGAGCCAAGTTCGGGATTCAATTTACTCAATGAGTGCGGCAAACA
AGTGACTAATAGGATTTACGGAGGGGAAATCGCCGAACTGGATGAGTTTC
CTTGGCTGGCACTGCTTGTCTACAACTCGAATGACTACGGTTGCAGTGGA
GCCCTAATCGATGATCGTCATATCCTAACAGCTGCCCATTGTGTTCAAGG
CGAGGGAGTTCGTGATCGCCAAGGATTAAAGCATGTGCGTTTGGGCGAAT
TCAACGTGAAAACTGAACCCGACTGCATCGAGGAGCCAAACTATTTGAGC
TGTGCAGACGCCGCTTTGGATATTGCCTACGAAAAGATCCATGTGCATCC
GGAGTACAAGGAGTTCTCGAACTACAAGTACAATGACATTGCCATTATCC
GGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTG
CCCCACAAATCCGAGCCACTGACATTGGGCGAGGGCCAGATGTTCTCCG
BO12772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-PA | 1275 | CG9737-RA | 1..883 | 17..899 | 4365 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-RA | 1635 | CG9737-RA | 112..995 | 16..899 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30242683..30243201 | 534..16 | 2580 | 99.8 | Minus |
3R | 32079331 | 3R | 30242172..30242443 | 899..628 | 1330 | 99.3 | Minus |
3R | 32079331 | 3R | 30242508..30242604 | 627..531 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:37 has no hits.
BO12772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:28 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:41 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:16 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 112..995 | 16..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:06 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 112..995 | 16..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:06 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30242172..30242443 | 628..899 | 99 | <- | Minus |
3R | 30242508..30242604 | 531..627 | 100 | <- | Minus |
3R | 30242687..30243201 | 16..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:16 Download gff for
BO12772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26067894..26068165 | 628..899 | 99 | <- | Minus |
arm_3R | 26068230..26068326 | 531..627 | 100 | <- | Minus |
arm_3R | 26068409..26068923 | 16..530 | 100 | | Minus |
BO12772.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ632559
> BO12772.complete
GAAGTTATCAGTCGACATGCTCGGTTCGGTTCTGCGACTATGGATACTCT
TCGGCTGTTTCTACCGCTTCTTGGCTCTGGCCGAGGTCCTGCAGGAGTGC
GACATTCCCAATGAGACGAAGAGGGGAGTTTGCCTGGAGGTCAGCAGGTG
CAAGGCGTATCTACAGGTGCGGAATGCCACCAATTTGCCGGCGGAGAAGG
TTAATTTCCTGAAGAAGGTGCAGTGCGAGGTGGAGCAGCAAGTGTCGGAG
GCGCAGGGTTCGTACGAATCACTGGTTTGCTGCCCGGCGAATGGCCAGGA
TTACCTATTTCCCGTGCTACAATTCTCTAAGTTCGAGTACCGAAGATTTC
TGGATGTTACCGCTCGATTCAAGCGGAAGAAACTCAAGCGGCGCATTCAA
ACGGTGGAGCCAAGTTCGGGATTCAATTTACTCAATGAGTGCGGCAAACA
AGTGACTAATAGGATTTACGGAGGGGAAATCGCCGAACTGGATGAGTTTC
CTTGGCTGGCACTGCTTGTCTACAACTCGAATGACTACGGTTGCAGTGGA
GCCCTAATCGATGATCGTCATATCCTAACAGCTGCCCATTGTGTTCAAGG
CGAGGGAGTTCGTGATCGCCAAGGATTAAAGCATGTGCGTTTGGGCGAAT
TCAACGTGAAAACTGAACCCGACTGCATCGAGGAGCCAAACTATTTGAGC
TGTGCAGACGCCGCTTTGGATATTGCCTACGAAAAGATCCATGTGCATCC
GGAGTACAAGGAGTTCTCGAACTACAAGTACAATGACATTGCCATTATCC
GGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTG
CCCAACAAATCCGAGCCACTGACATTGGCCGAGGGCCAGATGTTCTCCGT
TTCCGGATGGGGTCGCACGGATTTATTCAACAAGTACTTCATCAACATTC
ATAGTCCCATCAAGCTAAAGCTGCGCATTCCGTACGTCTCCAATGAGAAC
TGCACCAAGATTCTCGAGGGATTCGGAGTGCGATTGGGTCCCAAGCAAAT
CTGTGCCGGCGGAGAGTTCGCGAAGGACACGTGTGCCGGCGACTCCGGTG
GACCTCTGATGTACTTCGATAGACAGCACTCCCGGTGGGTGGCCTACGGC
GTGGTCAGCTACGGATTTACACAGTGCGGTATGGCCGGTAAGCCGGCTGT
TTATACTAACGTGGCCGAATACACGGACTGGATCGACAGTGTTGTGCAGC
AGAGGAAAAAGAGCCAACAGACGCAGGACAAAATGGCTGCAAGCTTTCTA
GACCAT
BO12772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-RA | 1275 | CG9737-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-RA | 1635 | CG9737-RA | 112..1384 | 16..1288 | 6365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30242683..30243201 | 534..16 | 2580 | 99.8 | Minus |
3R | 32079331 | 3R | 30241519..30241880 | 1288..927 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 30242145..30242443 | 926..628 | 1495 | 100 | Minus |
3R | 32079331 | 3R | 30242508..30242604 | 627..531 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:53 has no hits.
BO12772.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:38 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 1..1275 | 17..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:18 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 110..1382 | 16..1288 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:33 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 113..1384 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:39 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 110..1382 | 16..1288 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:22 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9737-RA | 113..1384 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:22 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30241515..30241880 | 927..1290 | 99 | <- | Minus |
3R | 30242145..30242443 | 628..926 | 100 | <- | Minus |
3R | 30242508..30242604 | 531..627 | 100 | <- | Minus |
3R | 30242687..30243200 | 17..530 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:33 Download gff for
BO12772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26067237..26067602 | 927..1290 | 99 | <- | Minus |
arm_3R | 26067867..26068165 | 628..926 | 100 | <- | Minus |
arm_3R | 26068230..26068326 | 531..627 | 100 | <- | Minus |
arm_3R | 26068409..26068922 | 17..530 | 100 | | Minus |
BO12772.pep Sequence
Translation from 16 to 1306
> BO12772.pep
MLGSVLRLWILFGCFYRFLALAEVLQECDIPNETKRGVCLEVSRCKAYLQ
VRNATNLPAEKVNFLKKVQCEVEQQVSEAQGSYESLVCCPANGQDYLFPV
LQFSKFEYRRFLDVTARFKRKKLKRRIQTVEPSSGFNLLNECGKQVTNRI
YGGEIAELDEFPWLALLVYNSNDYGCSGALIDDRHILTAAHCVQGEGVRD
RQGLKHVRLGEFNVKTEPDCIEEPNYLSCADAALDIAYEKIHVHPEYKEF
SNYKYNDIAIIRLKHPVSFTHFVMPICLPNKSEPLTLAEGQMFSVSGWGR
TDLFNKYFINIHSPIKLKLRIPYVSNENCTKILEGFGVRLGPKQICAGGE
FAKDTCAGDSGGPLMYFDRQHSRWVAYGVVSYGFTQCGMAGKPAVYTNVA
EYTDWIDSVVQQRKKSQQTQDKMAASFLDH
BO12772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9737-PA | 424 | CG9737-PA | 1..424 | 1..424 | 2271 | 100 | Plus |
CG9733-PA | 418 | CG9733-PA | 17..412 | 20..406 | 534 | 33.4 | Plus |
CG9733-PB | 417 | CG9733-PB | 24..411 | 28..406 | 532 | 33.6 | Plus |
Sp7-PF | 391 | CG3066-PF | 15..390 | 14..411 | 529 | 33.7 | Plus |
Sp7-PE | 391 | CG3066-PE | 15..390 | 14..411 | 529 | 33.7 | Plus |