Clone BO12772 Report

Search the DGRC for BO12772

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9737-RA
Protein status:BO12772.pep: validated full length
Sequenced Size:1306

Clone Sequence Records

BO12772.3prime Sequence

940 bp (835 high quality bases) assembled on 2006-05-08

> BO12772.3prime
ATGGTCTAGAAAGCTTGCAGCCATTTTGTCCTGCGTCTGTTGGCTCTTTT
TCCTCTGCTGCACAACACTGTCGATCCAGTCCGTGTATTCGGCCACGTTA
GTATAAACAGCCGGCTTACCGGCCATACCGCACTGTGTAAATCCGTAGCT
GACCACGCCGTAGGCCACCCACCGGGAGTGCTGTCTATCGAAGTACATCA
GAGGTCCACCGGAGTCGCCGGCACACGTGTCCTTCGCGAACTCTCCGCCG
GCACAGATTTGCTTGGGACCCAATCGCACTCCGAATCCCTCGAGAATCTT
GGTGCAGTTCTCATTGGAGACGTACGGAATGCGCAGCTTTAGCTTGATGG
GACTATGAATGTTGATGAAGTACTTGTTGAATAAATCCGTGCGACCCCAT
CCGGAAACGGAGAACATCTGGCCCTCGGCCAATGTCAGTGGCTCGGATTT
GTTGGGCAAACAGATGGGCATGACGAAGTGAGTGAAGGACACGGGATGCT
TTAGCCGGATAATGGCAATGTCATTGTACTTGTAGTTCGAGAACTCCTTG
TACTCCGGATGCACATGGATCTTTTCGTAGGCAATATCCAAAGCGGCGTC
TGCACAGCTCAAATAGTTTGGCTCCTCGATGCAGTCGGGTTCAGTTTTCA
CGTTGAATTCGCCCAAACGCACATGCTTTAATCCTTGGCGATCACGAACT
CCCTCGCCTTGAACACAATGGGCAGCTGTTAGGATATGACGATCATCGAT
TAGGGCTCCACTGCAACCGTAGTCATTCGAGTTGTAGACAAGCAGTGCCA
GCCAAGGAAACTCATCCAGTTCGGCGATTTCCCCTCCGTAAATCCTATTA
GTCACTTGTTTGCCGCACTCATTGAGTAAATTGAAATCCGAACTTGGCTC
CACCGTTTGAATGCGCCGCTTGAGTTTCTTCCGCTTGAAT

BO12772.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-PA 1275 CG9737-RA 351..1272 940..19 4560 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-RA 1635 CG9737-RA 463..1384 940..19 4580 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30241519..30241880 19..380 1810 100 Plus
3R 32079331 3R 30242145..30242443 381..679 1495 100 Plus
3R 32079331 3R 30242683..30242850 773..940 795 98.2 Plus
3R 32079331 3R 30242508..30242604 680..776 485 100 Plus
Blast to na_te.dros performed on 2015-01-31 12:08:26 has no hits.

BO12772.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:28 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-PA 351..1275 16..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:40 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-PA 351..1275 16..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:56:27 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 463..1384 19..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:49 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 463..1384 19..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:49 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30241519..30241880 19..380 100 <- Plus
3R 30242145..30242443 381..679 100 <- Plus
3R 30242508..30242604 680..776 100 <- Plus
3R 30242687..30242850 777..940 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:56:27 Download gff for BO12772.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26067241..26067602 19..380 100 <- Plus
arm_3R 26067867..26068165 381..679 100 <- Plus
arm_3R 26068230..26068326 680..776 100 <- Plus
arm_3R 26068409..26068572 777..940 98   Plus

BO12772.5prime Sequence

899 bp (849 high quality bases) assembled on 2006-05-08

> BO12772.5prime
GAAGTTATCAGTCGACATGCTCGGTTCGGTTCTGCGACTATGGATACTCT
TCGGCTGTTTCTACCGCTTCTTGGCTCTGGCCGAGGTCCTGCAGGAGTGC
GACATTCCCAATGAGACGAAGAGGGGAGTTTGCCTGGAGGTCAGCAGGTG
CAAGGCGTATCTACAGGTGCGGAATGCCACCAATTTGCCGGCGGAGAAGG
TTAATTTCCTGAAGAAGGTGCAGTGCGAGGTGGAGCAGCAAGTGTCGGAG
GCGCAGGGTTCGTACGAATCACTGGTTTGCTGCCCGGCGAATGGCCAGGA
TTACCTATTTCCCGTGCTACAATTCTCTAAGTTCGAGTACCGAAGATTTC
TGGATGTTACCGCTCGATTCAAGCGGAAGAAACTCAAGCGGCGCATTCAA
ACGGTGGAGCCAAGTTCGGGATTCAATTTACTCAATGAGTGCGGCAAACA
AGTGACTAATAGGATTTACGGAGGGGAAATCGCCGAACTGGATGAGTTTC
CTTGGCTGGCACTGCTTGTCTACAACTCGAATGACTACGGTTGCAGTGGA
GCCCTAATCGATGATCGTCATATCCTAACAGCTGCCCATTGTGTTCAAGG
CGAGGGAGTTCGTGATCGCCAAGGATTAAAGCATGTGCGTTTGGGCGAAT
TCAACGTGAAAACTGAACCCGACTGCATCGAGGAGCCAAACTATTTGAGC
TGTGCAGACGCCGCTTTGGATATTGCCTACGAAAAGATCCATGTGCATCC
GGAGTACAAGGAGTTCTCGAACTACAAGTACAATGACATTGCCATTATCC
GGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTG
CCCCACAAATCCGAGCCACTGACATTGGGCGAGGGCCAGATGTTCTCCG

BO12772.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-PA 1275 CG9737-RA 1..883 17..899 4365 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-RA 1635 CG9737-RA 112..995 16..899 4390 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30242683..30243201 534..16 2580 99.8 Minus
3R 32079331 3R 30242172..30242443 899..628 1330 99.3 Minus
3R 32079331 3R 30242508..30242604 627..531 485 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:20:37 has no hits.

BO12772.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:28 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:41 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-PA 1..883 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:16 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 112..995 16..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:06 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 112..995 16..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:06 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30242172..30242443 628..899 99 <- Minus
3R 30242508..30242604 531..627 100 <- Minus
3R 30242687..30243201 16..530 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:16 Download gff for BO12772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26067894..26068165 628..899 99 <- Minus
arm_3R 26068230..26068326 531..627 100 <- Minus
arm_3R 26068409..26068923 16..530 100   Minus

BO12772.complete Sequence

1306 bp assembled on 2006-10-11

GenBank Submission: FJ632559

> BO12772.complete
GAAGTTATCAGTCGACATGCTCGGTTCGGTTCTGCGACTATGGATACTCT
TCGGCTGTTTCTACCGCTTCTTGGCTCTGGCCGAGGTCCTGCAGGAGTGC
GACATTCCCAATGAGACGAAGAGGGGAGTTTGCCTGGAGGTCAGCAGGTG
CAAGGCGTATCTACAGGTGCGGAATGCCACCAATTTGCCGGCGGAGAAGG
TTAATTTCCTGAAGAAGGTGCAGTGCGAGGTGGAGCAGCAAGTGTCGGAG
GCGCAGGGTTCGTACGAATCACTGGTTTGCTGCCCGGCGAATGGCCAGGA
TTACCTATTTCCCGTGCTACAATTCTCTAAGTTCGAGTACCGAAGATTTC
TGGATGTTACCGCTCGATTCAAGCGGAAGAAACTCAAGCGGCGCATTCAA
ACGGTGGAGCCAAGTTCGGGATTCAATTTACTCAATGAGTGCGGCAAACA
AGTGACTAATAGGATTTACGGAGGGGAAATCGCCGAACTGGATGAGTTTC
CTTGGCTGGCACTGCTTGTCTACAACTCGAATGACTACGGTTGCAGTGGA
GCCCTAATCGATGATCGTCATATCCTAACAGCTGCCCATTGTGTTCAAGG
CGAGGGAGTTCGTGATCGCCAAGGATTAAAGCATGTGCGTTTGGGCGAAT
TCAACGTGAAAACTGAACCCGACTGCATCGAGGAGCCAAACTATTTGAGC
TGTGCAGACGCCGCTTTGGATATTGCCTACGAAAAGATCCATGTGCATCC
GGAGTACAAGGAGTTCTCGAACTACAAGTACAATGACATTGCCATTATCC
GGCTAAAGCATCCCGTGTCCTTCACTCACTTCGTCATGCCCATCTGTTTG
CCCAACAAATCCGAGCCACTGACATTGGCCGAGGGCCAGATGTTCTCCGT
TTCCGGATGGGGTCGCACGGATTTATTCAACAAGTACTTCATCAACATTC
ATAGTCCCATCAAGCTAAAGCTGCGCATTCCGTACGTCTCCAATGAGAAC
TGCACCAAGATTCTCGAGGGATTCGGAGTGCGATTGGGTCCCAAGCAAAT
CTGTGCCGGCGGAGAGTTCGCGAAGGACACGTGTGCCGGCGACTCCGGTG
GACCTCTGATGTACTTCGATAGACAGCACTCCCGGTGGGTGGCCTACGGC
GTGGTCAGCTACGGATTTACACAGTGCGGTATGGCCGGTAAGCCGGCTGT
TTATACTAACGTGGCCGAATACACGGACTGGATCGACAGTGTTGTGCAGC
AGAGGAAAAAGAGCCAACAGACGCAGGACAAAATGGCTGCAAGCTTTCTA
GACCAT

BO12772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-RA 1275 CG9737-PA 1..1272 17..1288 6360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-RA 1635 CG9737-RA 112..1384 16..1288 6365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30242683..30243201 534..16 2580 99.8 Minus
3R 32079331 3R 30241519..30241880 1288..927 1810 100 Minus
3R 32079331 3R 30242145..30242443 926..628 1495 100 Minus
3R 32079331 3R 30242508..30242604 627..531 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:53 has no hits.

BO12772.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:38 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 1..1275 17..1291 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:18 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 110..1382 16..1288 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:33 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 113..1384 17..1290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:39 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 110..1382 16..1288 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:22 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
CG9737-RA 113..1384 17..1290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:22 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30241515..30241880 927..1290 99 <- Minus
3R 30242145..30242443 628..926 100 <- Minus
3R 30242508..30242604 531..627 100 <- Minus
3R 30242687..30243200 17..530 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:33 Download gff for BO12772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26067237..26067602 927..1290 99 <- Minus
arm_3R 26067867..26068165 628..926 100 <- Minus
arm_3R 26068230..26068326 531..627 100 <- Minus
arm_3R 26068409..26068922 17..530 100   Minus

BO12772.pep Sequence

Translation from 16 to 1306

> BO12772.pep
MLGSVLRLWILFGCFYRFLALAEVLQECDIPNETKRGVCLEVSRCKAYLQ
VRNATNLPAEKVNFLKKVQCEVEQQVSEAQGSYESLVCCPANGQDYLFPV
LQFSKFEYRRFLDVTARFKRKKLKRRIQTVEPSSGFNLLNECGKQVTNRI
YGGEIAELDEFPWLALLVYNSNDYGCSGALIDDRHILTAAHCVQGEGVRD
RQGLKHVRLGEFNVKTEPDCIEEPNYLSCADAALDIAYEKIHVHPEYKEF
SNYKYNDIAIIRLKHPVSFTHFVMPICLPNKSEPLTLAEGQMFSVSGWGR
TDLFNKYFINIHSPIKLKLRIPYVSNENCTKILEGFGVRLGPKQICAGGE
FAKDTCAGDSGGPLMYFDRQHSRWVAYGVVSYGFTQCGMAGKPAVYTNVA
EYTDWIDSVVQQRKKSQQTQDKMAASFLDH

BO12772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9737-PA 424 CG9737-PA 1..424 1..424 2271 100 Plus
CG9733-PA 418 CG9733-PA 17..412 20..406 534 33.4 Plus
CG9733-PB 417 CG9733-PB 24..411 28..406 532 33.6 Plus
Sp7-PF 391 CG3066-PF 15..390 14..411 529 33.7 Plus
Sp7-PE 391 CG3066-PE 15..390 14..411 529 33.7 Plus