Clone Sequence Records
BO12774.3prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-09
> BO12774.3prime
ATGGTCTAGAAAGCTTGCTGCAAGGAGTTTCTTAATCTCGTCTTTTTCCG
CCGCCTCGAGGTAGCTTTGGCCATCTGGAGTAGAACCATTTTTATCAGCT
CCCATTTTTAGAAGTAATTCCACACAGCTCGTATGTCCTTCCCAAATGGC
AGCCAGAATGGGGGTAATACCATGTTTGTCCTTTCTATTTATGTCTGCTC
CTAAGCTTATAAGAAACTCCAGGACATTCAGTTGTCCAAAATCTGCTGCA
TAGTGTACTGGAAAACGGCCCTTGATTTCCTCATTCACCTTTTGTGCATC
ATTCTGAAAAGCGTCTTGCACAGCATCGAACTCTCCGTTCTTTATGGTCC
AAATAATGTCTTCATTAGAAATCGCACTCATGTCGACTGATAACT
BO12774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-PA | 366 | CG31715-RA | 1..363 | 381..19 | 1815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-RA | 580 | CG31715-RA | 67..429 | 381..19 | 1815 | 100 | Minus |
CG31715-RB | 574 | CG31715-RB | 67..423 | 381..19 | 1715 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10341822..10341932 | 297..187 | 555 | 100 | Minus |
2L | 23513712 | 2L | 10341682..10341766 | 381..297 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10342150..10342234 | 186..102 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10342288..10342372 | 103..19 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:05:20 has no hits.
BO12774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:31 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:45 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-PA | 1..366 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:57:23 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..432 | 15..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:27 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..432 | 15..381 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:27 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10342289..10342375 | 15..102 | 97 | | Minus |
2L | 10341682..10341765 | 298..381 | 100 | -> | Minus |
2L | 10341822..10341932 | 187..297 | 100 | -> | Minus |
2L | 10342150..10342233 | 103..186 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:57:23 Download gff for
BO12774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10341682..10341765 | 298..381 | 100 | -> | Minus |
arm_2L | 10341822..10341932 | 187..297 | 100 | -> | Minus |
arm_2L | 10342150..10342233 | 103..186 | 100 | -> | Minus |
arm_2L | 10342289..10342375 | 15..102 | 97 | | Minus |
BO12774.5prime Sequence
395 bp (394 high quality bases) assembled on 2006-05-08
> BO12774.5prime
GAAGTTATCAGTCGACATGAGTGCGATTTCTAATGAAGACATTATTTGGA
CCATAAAGAACGGAGAGTTCGATGCTGTGCAAGACGCTTTTCAGAATGAT
GCACAAAAGGTGAATGAGGAAATCAAGGGCCGTTTTCCAGTACACTATGC
AGCAGATTTTGGACAACTGAATGTCCTGGAGTTTCTTATAAGCTTAGGAG
CAGACATAAATAGAAAGGACAAACATGGTATTACCCCCATTCTGGCTGCC
ATTTGGGAAGGACATACGAGCTGTGTGGAATTACTTCTAAAAATGGGAGC
TGATAAAAATGGTTCTACTCCAGATGGCCAAAGCTACCTCGAGGCGGCGG
AAAAAGACGAGATTAAGAAACTCCTTGCAGCAAGCTTTCTAGACC
BO12774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-PA | 366 | CG31715-RA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-RA | 580 | CG31715-RA | 67..429 | 17..379 | 1815 | 100 | Plus |
CG31715-RB | 574 | CG31715-RB | 67..423 | 17..379 | 1715 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10341822..10341932 | 101..211 | 555 | 100 | Plus |
2L | 23513712 | 2L | 10341682..10341766 | 17..101 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10342150..10342234 | 212..296 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10342288..10342372 | 295..379 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:24:07 has no hits.
BO12774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:32 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:46 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-PA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:33 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..432 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:31 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..432 | 17..383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:31 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10341682..10341765 | 17..100 | 100 | -> | Plus |
2L | 10341822..10341932 | 101..211 | 100 | -> | Plus |
2L | 10342150..10342233 | 212..295 | 100 | -> | Plus |
2L | 10342289..10342375 | 296..383 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:33 Download gff for
BO12774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10341682..10341765 | 17..100 | 100 | -> | Plus |
arm_2L | 10341822..10341932 | 101..211 | 100 | -> | Plus |
arm_2L | 10342150..10342233 | 212..295 | 100 | -> | Plus |
arm_2L | 10342289..10342375 | 296..383 | 97 | | Plus |
BO12774.complete Sequence
397 bp assembled on 2006-10-11
GenBank Submission: FJ632560
> BO12774.complete
GAAGTTATCAGTCGACATGAGTGCGATTTCTAATGAAGACATTATTTGGA
CCATAAAGAACGGAGAGTTCGATGCTGTGCAAGACGCTTTTCAGAATGAT
GCACAAAAGGTGAATGAGGAAATCAAGGGCCGTTTTCCAGTACACTATGC
AGCAGATTTTGGACAACTGAATGTCCTGGAGTTTCTTATAAGCTTAGGAG
CAGACATAAATAGAAAGGACAAACATGGTATTACCCCCATTCTGGCTGCC
ATTTGGGAAGGACATACGAGCTGTGTGGAATTACTTCTAAAAATGGGAGC
TGATAAAAATGGTTCTACTCCAGATGGCCAAAGCTACCTCGAGGCGGCGG
AAAAAGACGAGATTAAGAAACTCCTTGCAGCAAGCTTTCTAGACCAT
BO12774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-RA | 366 | CG31715-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
CG31715-RB | 360 | CG31715-PB | 1..357 | 17..379 | 1690 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-RA | 580 | CG31715-RA | 67..429 | 17..379 | 1815 | 100 | Plus |
CG31715-RB | 574 | CG31715-RB | 67..423 | 17..379 | 1690 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10341822..10341932 | 101..211 | 555 | 100 | Plus |
2L | 23513712 | 2L | 10341682..10341766 | 17..101 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10342150..10342234 | 212..296 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10342288..10342372 | 295..379 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:50 has no hits.
BO12774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:20 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 1..366 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:34 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 62..427 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:07 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..429 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:20 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 62..427 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:02 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31715-RA | 67..429 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:02 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10341682..10341765 | 17..100 | 100 | -> | Plus |
2L | 10341822..10341932 | 101..211 | 100 | -> | Plus |
2L | 10342150..10342233 | 212..295 | 100 | -> | Plus |
2L | 10342289..10342372 | 296..381 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:07 Download gff for
BO12774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10341682..10341765 | 17..100 | 100 | -> | Plus |
arm_2L | 10341822..10341932 | 101..211 | 100 | -> | Plus |
arm_2L | 10342150..10342233 | 212..295 | 100 | -> | Plus |
arm_2L | 10342289..10342372 | 296..381 | 97 | | Plus |
BO12774.pep Sequence
Translation from 16 to 397
> BO12774.pep
MSAISNEDIIWTIKNGEFDAVQDAFQNDAQKVNEEIKGRFPVHYAADFGQ
LNVLEFLISLGADINRKDKHGITPILAAIWEGHTSCVELLLKMGADKNGS
TPDGQSYLEAAEKDEIKKLLAASFLDH
BO12774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31715-PA | 121 | CG31715-PA | 1..121 | 1..121 | 625 | 100 | Plus |
CG31715-PB | 119 | CG31715-PB | 1..119 | 1..121 | 602 | 98.3 | Plus |
CG7423-PA | 124 | CG7423-PA | 8..122 | 7..121 | 397 | 61.7 | Plus |
Tnks-PA | 1181 | CG4719-PA | 686..788 | 18..120 | 148 | 33 | Plus |
Tnks-PB | 1520 | CG4719-PB | 686..788 | 18..120 | 148 | 33 | Plus |