Clone Sequence Records
BO12775.3prime Sequence
407 bp (406 high quality bases) assembled on 2006-05-09
> BO12775.3prime
ATGGTCTAGAAAGCTTGCAGCTATGTCAGTTGGCGGGCTTCCATCGTGAT
TAGTCGTTCCACCCTGAGGAACACCTCTGAAAGCCTCGCCTTCATTTTGC
ACTGCTGGCTTCTCCGCTTGAAGATTACTCTGTGCGCGATGCGTCGATGG
AGGTACGGGCGTGTCAGAGGAGTTGCTAGACGCCTCCCTGGCTTTCAGTT
GCTTGGTCATGTCTATTTGCTGCTGCAGCGTGTAGGTATTCTCGTGTTTG
CGCCGTTGTTGCTGCTCAACGTCCCTCAGGACACCATCGTGCAGTCTCAG
GCGGTCTGCCGATTGTTTATAGTGCACATAACCTATGATCGCTGTGGAAA
TGGAGACCGCCAGTCCCAAAGTCACTCGCGAAGCGGTCGACATGTCGACT
GATAACT
BO12775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-PA | 378 | CG11562-RA | 1..375 | 393..19 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-RA | 748 | CG11562-RA | 150..525 | 394..19 | 1880 | 100 | Minus |
| U2af38-RB | 1655 | CG3582-RB | 1615..1655 | 19..59 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 292716..292999 | 302..19 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 292568..292660 | 394..302 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:51 has no hits.
BO12775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:33 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-PA | 1..378 | 16..393 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:48 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-PA | 1..378 | 16..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:03 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 19..401 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:26 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 19..401 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:26 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 292564..292660 | 302..401 | 97 | -> | Minus |
| 2L | 292717..292999 | 19..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:03 Download gff for
BO12775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 292564..292660 | 302..401 | 97 | -> | Minus |
| arm_2L | 292717..292999 | 19..301 | 100 | | Minus |
BO12775.5prime Sequence
407 bp (406 high quality bases) assembled on 2006-05-08
> BO12775.5prime
GAAGTTATCAGTCGACATGTCGACCGCTTCGCGAGTGACTTTGGGACTGG
CGGTCTCCATTTCCACAGCGATCATAGGTTATGTGCACTATAAACAATCG
GCAGACCGCCTGAGACTGCACGATGGTGTCCTGAGGGACGTTGAGCAGCA
ACAACGGCGCAAACACGAGAATACCTACACGCTGCAGCAGCAAATAGACA
TGACCAAGCAACTGAAAGCCAGGGAGGCGTCTAGCAACTCCTCTGACACG
CCCGTACCTCCATCGACGCATCGCGCACAGAGTAATCTTCAAGCGGAGAA
GCCAGCAGTGCAAAATGAAGGCGAGGCTTTCAGAGGTGTTCCTCAGGGTG
GAACGACTAATCACGATGGAAGCCCGCCAACTGACATAGCTGCAAGCTTT
CTAGACC
BO12775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-PA | 378 | CG11562-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-RA | 748 | CG11562-RA | 150..525 | 16..391 | 1880 | 100 | Plus |
| U2af38-RB | 1655 | CG3582-RB | 1615..1655 | 391..351 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 292716..292999 | 108..391 | 1420 | 100 | Plus |
| 2L | 23513712 | 2L | 292568..292660 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:29:36 has no hits.
BO12775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:34 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-PA | 1..378 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:49 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-PA | 1..378 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:21 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 9..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:38 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 146..525 | 9..391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:38 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 292717..292999 | 109..391 | 100 | | Plus |
| 2L | 292564..292660 | 9..108 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:21 Download gff for
BO12775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 292564..292660 | 9..108 | 97 | -> | Plus |
| arm_2L | 292717..292999 | 109..391 | 100 | | Plus |
BO12775.complete Sequence
409 bp assembled on 2006-10-11
GenBank Submission: FJ632561
> BO12775.complete
GAAGTTATCAGTCGACATGTCGACCGCTTCGCGAGTGACTTTGGGACTGG
CGGTCTCCATTTCCACAGCGATCATAGGTTATGTGCACTATAAACAATCG
GCAGACCGCCTGAGACTGCACGATGGTGTCCTGAGGGACGTTGAGCAGCA
ACAACGGCGCAAACACGAGAATACCTACACGCTGCAGCAGCAAATAGACA
TGACCAAGCAACTGAAAGCCAGGGAGGCGTCTAGCAACTCCTCTGACACG
CCCGTACCTCCATCGACGCATCGCGCACAGAGTAATCTTCAAGCGGAGAA
GCCAGCAGTGCAAAATGAAGGCGAGGCTTTCAGAGGTGTTCCTCAGGGTG
GAACGACTAATCACGATGGAAGCCCGCCAACTGACATAGCTGCAAGCTTT
CTAGACCAT
BO12775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-RA | 378 | CG11562-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-RA | 748 | CG11562-RA | 150..525 | 16..391 | 1880 | 100 | Plus |
| U2af38-RB | 1655 | CG3582-RB | 1615..1655 | 391..351 | 205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 292716..292999 | 108..391 | 1420 | 100 | Plus |
| 2L | 23513712 | 2L | 292568..292660 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:29 has no hits.
BO12775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:21 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 1..378 | 17..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:54 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 99..478 | 9..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:13 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 151..525 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:21 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 99..478 | 9..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:29 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11562-RA | 151..525 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:29 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 292569..292660 | 17..108 | 100 | -> | Plus |
| 2L | 292717..292999 | 109..393 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:13 Download gff for
BO12775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 292569..292660 | 17..108 | 100 | -> | Plus |
| arm_2L | 292717..292999 | 109..393 | 99 | | Plus |
BO12775.pep Sequence
Translation from 16 to 409
> BO12775.pep
MSTASRVTLGLAVSISTAIIGYVHYKQSADRLRLHDGVLRDVEQQQRRKH
ENTYTLQQQIDMTKQLKAREASSNSSDTPVPPSTHRAQSNLQAEKPAVQN
EGEAFRGVPQGGTTNHDGSPPTDIAASFLDH
BO12775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11562-PA | 125 | CG11562-PA | 1..125 | 1..125 | 637 | 100 | Plus |
