Clone BO12777 Report

Search the DGRC for BO12777

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptm1-RA
Protein status:BO12777.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO12777.3prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-08

> BO12777.3prime
ATGGTCTAGAAAGCTTGCGCATTTCTCTTCGCGCAAAAGACGGAAGAGCT
CAGCGGGTTGGGCGCCGGAGACCTGCAGGGCGCAGTTGAAGTTCTCCAGC
AGGCAGGAGTTGGCCAACTCGGCACGATACTTTCCATTGGTAATGCACAC
CGGCTGGTAGATCATCGAGCAGGGCTTGAAGCATTCCTTGACCTCCAGCT
TGAAGTTGCCCAACTTCTCGTGCAGATTCTCGACGAACTCGGAGCTGCAC
CAGGCGGCATCGGTGGCAGCATAGGCCTGCACGCTATTCCTTTCGCGGCG
ACAGTTGTGGGACAAAAGATTGCAGGTGCTAGCAAACTCCTTGAAGTTCT
GGCCATCAGTTCCGCATACTGGCTTGTAGATACTGGGGCAAAAAGTTGGA
CAAGCGGTATCGTTGGTGGACACTGTATTTCCGTATACACATGCCACCAA
TGCAAGGCAGCAAAGGGTCAAAGTTTGGCTCATCATGTCGACTGATAACT

BO12777.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8342-PA 471 m1-RA 1..468 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..563 486..19 2340 100 Minus
Kaz-m1-RA 670 CG8342-RA 96..563 486..19 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015345 276..19 1290 100 Minus
3R 32079331 3R 26014816..26015026 486..276 1055 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:40:46 has no hits.

BO12777.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:45:37 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:53 Download gff for BO12777.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8342-PA 1..471 18..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:50 Download gff for BO12777.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 88..560 19..491 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:27 Download gff for BO12777.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 91..563 19..491 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:27 Download gff for BO12777.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26015089..26015344 20..275 100 <- Minus
3R 26014811..26015026 276..491 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:50 Download gff for BO12777.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840533..21840748 276..491 99 -> Minus
arm_3R 21840811..21841066 20..275 100 <- Minus

BO12777.5prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-08

> BO12777.5prime
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCGCAAGCTTTCTAGACC

BO12777.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8342-PA 471 m1-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..563 17..484 2340 100 Plus
Kaz-m1-RA 670 CG8342-RA 96..563 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015345 227..484 1290 100 Plus
3R 32079331 3R 26014816..26015026 17..227 1055 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:38:36 has no hits.

BO12777.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:45:38 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:54 Download gff for BO12777.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8342-PA 1..471 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:34 Download gff for BO12777.5prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 88..560 12..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:39 Download gff for BO12777.5prime
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 91..563 12..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:39 Download gff for BO12777.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26014811..26015026 12..227 99 -> Plus
3R 26015089..26015344 228..483 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:34 Download gff for BO12777.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840533..21840748 12..227 99 -> Plus
arm_3R 21840811..21841066 228..483 100 <- Plus

BO12777.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ632562

> BO12777.complete
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCGCAAGCTTTCTAGACC
AT

BO12777.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 471 CG8342-PB 1..468 17..484 2340 100 Plus
Kaz-m1-RA 471 CG8342-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-RB 1705 CG8342-RB 96..563 17..484 2340 100 Plus
Kaz-m1-RA 670 CG8342-RA 96..563 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26015088..26015345 227..484 1290 100 Plus
3R 32079331 3R 26014816..26015026 17..227 1055 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:55:17 has no hits.

BO12777.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:22 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 1..471 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:56 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 87..559 12..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:36 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 93..560 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:22 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
m1-RA 87..559 12..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:38 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz-m1-RA 96..563 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:38 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26014816..26015026 17..227 100 -> Plus
3R 26015089..26015345 228..486 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:36 Download gff for BO12777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21840811..21841067 228..486 99   Plus
arm_3R 21840538..21840748 17..227 100 -> Plus

BO12777.pep Sequence

Translation from 16 to 502

> BO12777.pep
MMSQTLTLCCLALVACVYGNTVSTNDTACPTFCPSIYKPVCGTDGQNFKE
FASTCNLLSHNCRRERNSVQAYAATDAAWCSSEFVENLHEKLGNFKLEVK
ECFKPCSMIYQPVCITNGKYRAELANSCLLENFNCALQVSGAQPAELFRL
LREEKCASFLDH

BO12777.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz-m1-PB 156 CG8342-PB 1..156 1..156 850 100 Plus
Kaz-m1-PA 156 CG8342-PA 1..156 1..156 850 100 Plus