Clone Sequence Records
BO12777.3prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-08
> BO12777.3prime
ATGGTCTAGAAAGCTTGCGCATTTCTCTTCGCGCAAAAGACGGAAGAGCT
CAGCGGGTTGGGCGCCGGAGACCTGCAGGGCGCAGTTGAAGTTCTCCAGC
AGGCAGGAGTTGGCCAACTCGGCACGATACTTTCCATTGGTAATGCACAC
CGGCTGGTAGATCATCGAGCAGGGCTTGAAGCATTCCTTGACCTCCAGCT
TGAAGTTGCCCAACTTCTCGTGCAGATTCTCGACGAACTCGGAGCTGCAC
CAGGCGGCATCGGTGGCAGCATAGGCCTGCACGCTATTCCTTTCGCGGCG
ACAGTTGTGGGACAAAAGATTGCAGGTGCTAGCAAACTCCTTGAAGTTCT
GGCCATCAGTTCCGCATACTGGCTTGTAGATACTGGGGCAAAAAGTTGGA
CAAGCGGTATCGTTGGTGGACACTGTATTTCCGTATACACATGCCACCAA
TGCAAGGCAGCAAAGGGTCAAAGTTTGGCTCATCATGTCGACTGATAACT
BO12777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8342-PA | 471 | m1-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..563 | 486..19 | 2340 | 100 | Minus |
Kaz-m1-RA | 670 | CG8342-RA | 96..563 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015345 | 276..19 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 26014816..26015026 | 486..276 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:40:46 has no hits.
BO12777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:45:37 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:53 Download gff for
BO12777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8342-PA | 1..471 | 18..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:50 Download gff for
BO12777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 88..560 | 19..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:27 Download gff for
BO12777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 91..563 | 19..491 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:27 Download gff for
BO12777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26015089..26015344 | 20..275 | 100 | <- | Minus |
3R | 26014811..26015026 | 276..491 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:50 Download gff for
BO12777.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840533..21840748 | 276..491 | 99 | -> | Minus |
arm_3R | 21840811..21841066 | 20..275 | 100 | <- | Minus |
BO12777.5prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-08
> BO12777.5prime
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCGCAAGCTTTCTAGACC
BO12777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8342-PA | 471 | m1-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..563 | 17..484 | 2340 | 100 | Plus |
Kaz-m1-RA | 670 | CG8342-RA | 96..563 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015345 | 227..484 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 26014816..26015026 | 17..227 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:38:36 has no hits.
BO12777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:45:38 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:54 Download gff for
BO12777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8342-PA | 1..471 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:34 Download gff for
BO12777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 88..560 | 12..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:39 Download gff for
BO12777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 91..563 | 12..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:39 Download gff for
BO12777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26014811..26015026 | 12..227 | 99 | -> | Plus |
3R | 26015089..26015344 | 228..483 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:34 Download gff for
BO12777.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840533..21840748 | 12..227 | 99 | -> | Plus |
arm_3R | 21840811..21841066 | 228..483 | 100 | <- | Plus |
BO12777.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ632562
> BO12777.complete
GAAGTTATCAGTCGACATGATGAGCCAAACTTTGACCCTTTGCTGCCTTG
CATTGGTGGCATGTGTATACGGAAATACAGTGTCCACCAACGATACCGCT
TGTCCAACTTTTTGCCCCAGTATCTACAAGCCAGTATGCGGAACTGATGG
CCAGAACTTCAAGGAGTTTGCTAGCACCTGCAATCTTTTGTCCCACAACT
GTCGCCGCGAAAGGAATAGCGTGCAGGCCTATGCTGCCACCGATGCCGCC
TGGTGCAGCTCCGAGTTCGTCGAGAATCTGCACGAGAAGTTGGGCAACTT
CAAGCTGGAGGTCAAGGAATGCTTCAAGCCCTGCTCGATGATCTACCAGC
CGGTGTGCATTACCAATGGAAAGTATCGTGCCGAGTTGGCCAACTCCTGC
CTGCTGGAGAACTTCAACTGCGCCCTGCAGGTCTCCGGCGCCCAACCCGC
TGAGCTCTTCCGTCTTTTGCGCGAAGAGAAATGCGCAAGCTTTCTAGACC
AT
BO12777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 471 | CG8342-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
Kaz-m1-RA | 471 | CG8342-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-RB | 1705 | CG8342-RB | 96..563 | 17..484 | 2340 | 100 | Plus |
Kaz-m1-RA | 670 | CG8342-RA | 96..563 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26015088..26015345 | 227..484 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 26014816..26015026 | 17..227 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:55:17 has no hits.
BO12777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:22 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 1..471 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:56 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 87..559 | 12..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:36 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 93..560 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:22 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m1-RA | 87..559 | 12..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:38 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz-m1-RA | 96..563 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:38 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26014816..26015026 | 17..227 | 100 | -> | Plus |
3R | 26015089..26015345 | 228..486 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:36 Download gff for
BO12777.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21840811..21841067 | 228..486 | 99 | | Plus |
arm_3R | 21840538..21840748 | 17..227 | 100 | -> | Plus |
BO12777.pep Sequence
Translation from 16 to 502
> BO12777.pep
MMSQTLTLCCLALVACVYGNTVSTNDTACPTFCPSIYKPVCGTDGQNFKE
FASTCNLLSHNCRRERNSVQAYAATDAAWCSSEFVENLHEKLGNFKLEVK
ECFKPCSMIYQPVCITNGKYRAELANSCLLENFNCALQVSGAQPAELFRL
LREEKCASFLDH
BO12777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz-m1-PB | 156 | CG8342-PB | 1..156 | 1..156 | 850 | 100 | Plus |
Kaz-m1-PA | 156 | CG8342-PA | 1..156 | 1..156 | 850 | 100 | Plus |