Clone BO12778 Report

Search the DGRC for BO12778

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG15738-RA
Protein status:BO12778.pep: validated full length
Sequenced Size:1036

Clone Sequence Records

BO12778.3prime Sequence

908 bp (830 high quality bases) assembled on 2006-05-08

> BO12778.3prime
ATGGTCTAGAAAGCTTGCGAACCGATTAAGCAGCGACTTCCAGAATAAAC
GTGCTGGCAGTAAGGTGTCGCGGCCTACGCAGCTCTTGTGGGTTAGCAGG
AAGTTGGCACGGCGGAGGCGCTCCAAATATGCATCCGTGGCCACGGCGGA
GAGGAAGATCTTGCGCACCTGCGGCGGCACCTTATCGTGCAGCTGCCTGG
CGAGCTTTAGGTGCGTATTGGCGGCACTGGCCACATCGAATATACAGTCC
TCGACACCCTTGTCGTCGCTCTTAGAGCGAATGATGCGCTCCTGGCTGAC
GCCATGCAGCACCAGCACCTCGAGCGGAATGCAGGGCGCCTGCTGACGTC
CTGCCAGCGGTATCGATCGCAGCAGGGTGGCGATGCCTTGGGCCTTGCCC
AAGTGGGAGGCGGCATGATCAGCATTTAGGTCACGCACTCCGCCCACCTC
CAACAGCAGGAGCAATAGCGAAGAGAAGGTCTGTTCCGTGTACTCCTCCA
GCTCGCGTATCGACTCAAATGCATGCGTGGGCGGACGTTCCCGTGCTGTG
ACCAGACGGCGCAAATATACCTTATTTAGCTTGCGACTGCCCACCGTGTG
CTTCAGTTCGCGCAGGACAGGCTGGTCCTCCACGTACGATCTTTGGGAAT
CCGGCTCAAAGCACTTGTCTATGGAGTCGTGCCAGAACTTAAGGCGCATT
TTGGCTATTTGCGGCTCAATTTGATGGCCGCTAACCGATCTGGAGACCTC
CACATTGAATGCCCGTAGGGCGAAGGCAGCACGTCGCAGTTCCCGTGGTA
GGAGCAAGGTGCACAGGTAGTTCTCGTAGTCGTATTTCTTCACTAGACTC
ATGCAATGTTTGGCCCCGTATCCTTTCTTGTCCCGCTCATTCACTTTCTT
TTCCCTGG

BO12778.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15738-PA 1005 CG15738-RA 113..1002 908..19 4325 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-RB 1385 CG15738-RB 419..1308 908..19 4375 99.4 Minus
sicily-RA 1110 CG15738-RA 144..1033 908..19 4375 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11892730..11893356 723..97 3135 100 Minus
X 23542271 X 11892289..11892403 838..724 575 100 Minus
X 23542271 X 11893590..11893668 97..19 395 100 Minus
X 23542271 X 11892150..11892217 908..841 280 94.1 Minus
Blast to na_te.dros performed on 2015-02-10 14:42:41 has no hits.

BO12778.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:39 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15738-PA 113..1005 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:56 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15738-PA 113..1005 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:19:46 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 144..1040 13..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:25 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 144..1040 13..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:25 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11892150..11892219 839..908 92 -> Minus
X 11892289..11892403 724..838 100 -> Minus
X 11892730..11893355 98..723 100 -> Minus
X 11893590..11893675 13..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:19:46 Download gff for BO12778.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11786183..11786252 839..908 92 -> Minus
arm_X 11786322..11786436 724..838 100 -> Minus
arm_X 11786763..11787388 98..723 100 -> Minus
arm_X 11787623..11787708 13..97 96   Minus

BO12778.5prime Sequence

828 bp (773 high quality bases) assembled on 2006-05-08

> BO12778.5prime
GAAGTTATCAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGAT
TGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATT
CACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGA
GGCGGACAAGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGA
AATACGACTACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTG
CGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATC
GGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGT
TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCG
TACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAG
TCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAAC
GTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACG
GAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGT
GCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAG
GCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCG
CCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCG
CATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCG
ATGTGGGCAGTGCCGCCAATACGCACCT

BO12778.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15738-PA 1005 CG15738-RA 1..812 17..828 4035 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-RB 1385 CG15738-RB 307..1118 17..828 4045 99.9 Plus
sicily-RA 1110 CG15738-RA 32..843 17..828 4045 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11892730..11893244 314..828 2560 99.8 Plus
X 23542271 X 11892038..11892220 17..199 915 100 Plus
X 23542271 X 11892289..11892403 199..313 575 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:39:18 has no hits.

BO12778.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:40 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15738-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:57 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15738-PA 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:10 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 27..843 9..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:43 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 27..843 9..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:43 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11892033..11892219 9..198 97 -> Plus
X 11892289..11892403 199..313 100 -> Plus
X 11892730..11893244 314..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:10 Download gff for BO12778.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11786066..11786252 9..198 97 -> Plus
arm_X 11786322..11786436 199..313 100 -> Plus
arm_X 11786763..11787277 314..828 99   Plus

BO12778.complete Sequence

1036 bp assembled on 2006-10-11

GenBank Submission: FJ632563

> BO12778.complete
GAAGTTATCAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGAT
TGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATT
CACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGA
GGCGGACAAGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGA
AATACGACTACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTG
CGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATC
GGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGT
TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCG
TACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAG
TCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAAC
GTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACG
GAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGT
GCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAG
GCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCG
CCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCG
CATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCG
ATGTGGCCAGTGCCGCCAATACGCACCTAAAGCTCGCCAGGCAGCTGCAC
GATAAGGTGCCGCCGCAGGTGCGCAAGATCTTCCTCTCCGCCGTGGCCAC
GGATGCATATTTGGAGCGCCTCCGCCGTGCCAACTTCCTGCTAACCCACA
AGAGCTGCGTAGGCCGCGACACCTTACTGCCAGCACGTTTATTCTGGAAG
TCGCTGCTTAATCGGTTCGCAAGCTTTCTAGACCAT

BO12778.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-RB 1005 CG15738-PB 1..1002 17..1018 5010 100 Plus
sicily-RA 1005 CG15738-PA 1..1002 17..1018 5010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-RB 1385 CG15738-RB 307..1308 17..1018 5010 100 Plus
sicily-RA 1110 CG15738-RA 32..1033 17..1018 5010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11892730..11893356 314..940 3135 100 Plus
X 23542271 X 11892038..11892220 17..199 915 100 Plus
X 23542271 X 11892289..11892403 199..313 575 100 Plus
X 23542271 X 11893590..11893668 940..1018 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:40:49 has no hits.

BO12778.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:23 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 1..1005 17..1021 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:57 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 24..1037 9..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:32:36 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 32..1033 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:23 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
CG15738-RA 24..1037 9..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:02 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
sicily-RA 32..1033 17..1020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:02 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
X 11892289..11892403 199..313 100 -> Plus
X 11892038..11892219 17..198 100 -> Plus
X 11892730..11893355 314..939 100 -> Plus
X 11893590..11893668 940..1020 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:32:36 Download gff for BO12778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11786322..11786436 199..313 100 -> Plus
arm_X 11786071..11786252 17..198 100 -> Plus
arm_X 11786763..11787388 314..939 100 -> Plus
arm_X 11787623..11787701 940..1020 97   Plus

BO12778.pep Sequence

Translation from 16 to 1036

> BO12778.pep
MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNG
YGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQ
IEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNK
VYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNA
DHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSK
SDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLE
RLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRFASFLDH

BO12778.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
sicily-PB 334 CG15738-PB 1..334 1..334 1717 100 Plus
sicily-PA 334 CG15738-PA 1..334 1..334 1717 100 Plus