Clone Sequence Records
BO12778.3prime Sequence
908 bp (830 high quality bases) assembled on 2006-05-08
> BO12778.3prime
ATGGTCTAGAAAGCTTGCGAACCGATTAAGCAGCGACTTCCAGAATAAAC
GTGCTGGCAGTAAGGTGTCGCGGCCTACGCAGCTCTTGTGGGTTAGCAGG
AAGTTGGCACGGCGGAGGCGCTCCAAATATGCATCCGTGGCCACGGCGGA
GAGGAAGATCTTGCGCACCTGCGGCGGCACCTTATCGTGCAGCTGCCTGG
CGAGCTTTAGGTGCGTATTGGCGGCACTGGCCACATCGAATATACAGTCC
TCGACACCCTTGTCGTCGCTCTTAGAGCGAATGATGCGCTCCTGGCTGAC
GCCATGCAGCACCAGCACCTCGAGCGGAATGCAGGGCGCCTGCTGACGTC
CTGCCAGCGGTATCGATCGCAGCAGGGTGGCGATGCCTTGGGCCTTGCCC
AAGTGGGAGGCGGCATGATCAGCATTTAGGTCACGCACTCCGCCCACCTC
CAACAGCAGGAGCAATAGCGAAGAGAAGGTCTGTTCCGTGTACTCCTCCA
GCTCGCGTATCGACTCAAATGCATGCGTGGGCGGACGTTCCCGTGCTGTG
ACCAGACGGCGCAAATATACCTTATTTAGCTTGCGACTGCCCACCGTGTG
CTTCAGTTCGCGCAGGACAGGCTGGTCCTCCACGTACGATCTTTGGGAAT
CCGGCTCAAAGCACTTGTCTATGGAGTCGTGCCAGAACTTAAGGCGCATT
TTGGCTATTTGCGGCTCAATTTGATGGCCGCTAACCGATCTGGAGACCTC
CACATTGAATGCCCGTAGGGCGAAGGCAGCACGTCGCAGTTCCCGTGGTA
GGAGCAAGGTGCACAGGTAGTTCTCGTAGTCGTATTTCTTCACTAGACTC
ATGCAATGTTTGGCCCCGTATCCTTTCTTGTCCCGCTCATTCACTTTCTT
TTCCCTGG
BO12778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15738-PA | 1005 | CG15738-RA | 113..1002 | 908..19 | 4325 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sicily-RB | 1385 | CG15738-RB | 419..1308 | 908..19 | 4375 | 99.4 | Minus |
sicily-RA | 1110 | CG15738-RA | 144..1033 | 908..19 | 4375 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11892730..11893356 | 723..97 | 3135 | 100 | Minus |
X | 23542271 | X | 11892289..11892403 | 838..724 | 575 | 100 | Minus |
X | 23542271 | X | 11893590..11893668 | 97..19 | 395 | 100 | Minus |
X | 23542271 | X | 11892150..11892217 | 908..841 | 280 | 94.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:42:41 has no hits.
BO12778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:39 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-PA | 113..1005 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:56 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-PA | 113..1005 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:19:46 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 144..1040 | 13..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:25 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 144..1040 | 13..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:25 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11892150..11892219 | 839..908 | 92 | -> | Minus |
X | 11892289..11892403 | 724..838 | 100 | -> | Minus |
X | 11892730..11893355 | 98..723 | 100 | -> | Minus |
X | 11893590..11893675 | 13..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:19:46 Download gff for
BO12778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11786183..11786252 | 839..908 | 92 | -> | Minus |
arm_X | 11786322..11786436 | 724..838 | 100 | -> | Minus |
arm_X | 11786763..11787388 | 98..723 | 100 | -> | Minus |
arm_X | 11787623..11787708 | 13..97 | 96 | | Minus |
BO12778.5prime Sequence
828 bp (773 high quality bases) assembled on 2006-05-08
> BO12778.5prime
GAAGTTATCAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGAT
TGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATT
CACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGA
GGCGGACAAGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGA
AATACGACTACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTG
CGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATC
GGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGT
TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCG
TACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAG
TCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAAC
GTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACG
GAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGT
GCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAG
GCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCG
CCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCG
CATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCG
ATGTGGGCAGTGCCGCCAATACGCACCT
BO12778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15738-PA | 1005 | CG15738-RA | 1..812 | 17..828 | 4035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sicily-RB | 1385 | CG15738-RB | 307..1118 | 17..828 | 4045 | 99.9 | Plus |
sicily-RA | 1110 | CG15738-RA | 32..843 | 17..828 | 4045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11892730..11893244 | 314..828 | 2560 | 99.8 | Plus |
X | 23542271 | X | 11892038..11892220 | 17..199 | 915 | 100 | Plus |
X | 23542271 | X | 11892289..11892403 | 199..313 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:39:18 has no hits.
BO12778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:40 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-PA | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:24:57 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-PA | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:10 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 27..843 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:24:43 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 27..843 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:24:43 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11892033..11892219 | 9..198 | 97 | -> | Plus |
X | 11892289..11892403 | 199..313 | 100 | -> | Plus |
X | 11892730..11893244 | 314..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:10 Download gff for
BO12778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11786066..11786252 | 9..198 | 97 | -> | Plus |
arm_X | 11786322..11786436 | 199..313 | 100 | -> | Plus |
arm_X | 11786763..11787277 | 314..828 | 99 | | Plus |
BO12778.complete Sequence
1036 bp assembled on 2006-10-11
GenBank Submission: FJ632563
> BO12778.complete
GAAGTTATCAGTCGACATGCGGCGCCTGGTGCGAAATTGGAATTGCCGAT
TGTTATTTAACGCCAAATCCGGCCAAGAAATTGTCAGCCATGCCGGAATT
CACCAGGAGGCCAAGACCAATGCGATTCCCAGGGAAAAGAAAGTGATTGA
GGCGGACAAGAATGGATACGGGGCCAAACATTGCATGAGTCTAGTGGAGA
AATACGACTACGAGAACTACCTGTGCACCTTGCTCCTACCACGGGAACTG
CGACGTGCTGCCTTCGCCCTACGGGCATTCAATGTGGAGGTCTCCAGATC
GGTTAGCGGCCATCAAATTGAGCCGCAAATAGCCAAAATGCGCCTTAAGT
TCTGGCACGACTCCATAGACAAGTGCTTTGAGCCGGATTCCCAAAGATCG
TACGTGGAGGACCAGCCTGTCCTGCGCGAACTGAAGCACACGGTGGGCAG
TCGCAAGCTAAATAAGGTATATTTGCGCCGTCTGGTCACAGCACGGGAAC
GTCCGCCCACGCATGCATTTGAGTCGATACGCGAGCTGGAGGAGTACACG
GAACAGACCTTCTCTTCGCTATTGCTCCTGCTGTTGGAGGTGGGCGGAGT
GCGTGACCTAAATGCTGATCATGCCGCCTCCCACTTGGGCAAGGCCCAAG
GCATCGCCACCCTGCTGCGATCGATACCGCTGGCAGGACGTCAGCAGGCG
CCCTGCATTCCGCTCGAGGTGCTGGTGCTGCATGGCGTCAGCCAGGAGCG
CATCATTCGCTCTAAGAGCGACGACAAGGGTGTCGAGGACTGTATATTCG
ATGTGGCCAGTGCCGCCAATACGCACCTAAAGCTCGCCAGGCAGCTGCAC
GATAAGGTGCCGCCGCAGGTGCGCAAGATCTTCCTCTCCGCCGTGGCCAC
GGATGCATATTTGGAGCGCCTCCGCCGTGCCAACTTCCTGCTAACCCACA
AGAGCTGCGTAGGCCGCGACACCTTACTGCCAGCACGTTTATTCTGGAAG
TCGCTGCTTAATCGGTTCGCAAGCTTTCTAGACCAT
BO12778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sicily-RB | 1005 | CG15738-PB | 1..1002 | 17..1018 | 5010 | 100 | Plus |
sicily-RA | 1005 | CG15738-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sicily-RB | 1385 | CG15738-RB | 307..1308 | 17..1018 | 5010 | 100 | Plus |
sicily-RA | 1110 | CG15738-RA | 32..1033 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11892730..11893356 | 314..940 | 3135 | 100 | Plus |
X | 23542271 | X | 11892038..11892220 | 17..199 | 915 | 100 | Plus |
X | 23542271 | X | 11892289..11892403 | 199..313 | 575 | 100 | Plus |
X | 23542271 | X | 11893590..11893668 | 940..1018 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:40:49 has no hits.
BO12778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:23 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-RA | 1..1005 | 17..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:57 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-RA | 24..1037 | 9..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:32:36 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 32..1033 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:23 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15738-RA | 24..1037 | 9..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:02 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sicily-RA | 32..1033 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:02 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11892289..11892403 | 199..313 | 100 | -> | Plus |
X | 11892038..11892219 | 17..198 | 100 | -> | Plus |
X | 11892730..11893355 | 314..939 | 100 | -> | Plus |
X | 11893590..11893668 | 940..1020 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:32:36 Download gff for
BO12778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11786322..11786436 | 199..313 | 100 | -> | Plus |
arm_X | 11786071..11786252 | 17..198 | 100 | -> | Plus |
arm_X | 11786763..11787388 | 314..939 | 100 | -> | Plus |
arm_X | 11787623..11787701 | 940..1020 | 97 | | Plus |
BO12778.pep Sequence
Translation from 16 to 1036
> BO12778.pep
MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNG
YGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQ
IEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNK
VYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNA
DHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSK
SDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLE
RLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRFASFLDH
BO12778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sicily-PB | 334 | CG15738-PB | 1..334 | 1..334 | 1717 | 100 | Plus |
sicily-PA | 334 | CG15738-PA | 1..334 | 1..334 | 1717 | 100 | Plus |