Clone Sequence Records
BO12780.3prime Sequence
791 bp (790 high quality bases) assembled on 2006-05-09
> BO12780.3prime
ATGGTCTAGAAAGCTTGCTCTGTTGCCTCTGCTGACCAGCAGTGTCAGCA
ATGTCCCTGTGAGCAGGAGTCCCAAACTACTGCCAGCTGCTCGCGTGGAG
CCATTGCCCTCGCCATCCCTGCAGATGCCCGGATTTCGGGTGAAGTCCTC
GCAGTAGATCTTGGTCAGGCTGTTGGCATATTTGTCCACCAGTTGACGCG
TAAACTTTGCCGCCTCATTGCCGCAGATCTTGCGTGCAGCATCCTCCGAG
CAATCCACAAGTTCGTTGATGGAGCAGCAAATGGTCTTGATGTTCTCGTT
CAGGGTGCCGTTCTCGGAGTTTTCCTGGTTCTTGTTTGGCTTGAGGAACA
CCATGGTCTCCCGATAACGATTGGAGCACACCTCGAACTCCTTCTTGGCC
ATTTCAGAGCAGGGCACATGCTTGAGGTACTCGTCCTGGAAGGCACCCTT
GTTGCACAGATCCCTGATGAACTGGTTGGTGTCGTGGTAGAGCTTGTTGA
ACTGATTCCTCTGCTGCAGATCCATGCAACGCCGGGTATAGCTCTGTATG
CACCTCACGCCCTTGCGCAGCTCATGACAAAGTTTTTCCAGTTCCTCCTT
CTTGGCCGGGCCAATCGAGAAGTCCGACGTTAAATGCAGCATATCAAGTG
GTTCGGCGCACTTGGTGAACTCCTCCTGGCCGCATTCCTCCGAATTGGCC
ACCTCCGCCGAGAGAAGTAGCAGGGCCGAGAAAACCAAAAGAGTCCAGCT
CCAGTTGCGATTCCACATTTGATGCATGTCGACTGATAACT
BO12780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-PA | 762 | CG9896-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-RA | 2043 | CG9896-RA | 267..1025 | 777..19 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22995324..22995623 | 275..574 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 22995890..22996041 | 575..726 | 760 | 100 | Plus |
2R | 25286936 | 2R | 22994687..22994829 | 19..161 | 715 | 100 | Plus |
2R | 25286936 | 2R | 22994885..22995000 | 160..275 | 580 | 100 | Plus |
2R | 25286936 | 2R | 22996377..22996428 | 726..777 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:19:10 has no hits.
BO12780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:43 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:00 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-PA | 1..762 | 18..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:14 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 264..1025 | 19..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:55 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 264..1025 | 19..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:55 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22995890..22996040 | 575..725 | 100 | <- | Plus |
2R | 22994885..22994999 | 160..274 | 100 | <- | Plus |
2R | 22995324..22995623 | 275..574 | 100 | <- | Plus |
2R | 22994687..22994827 | 19..159 | 100 | <- | Plus |
2R | 22996377..22996431 | 726..780 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:14 Download gff for
BO12780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18882210..18882350 | 19..159 | 100 | <- | Plus |
arm_2R | 18882408..18882522 | 160..274 | 100 | <- | Plus |
arm_2R | 18882847..18883146 | 275..574 | 100 | <- | Plus |
arm_2R | 18883413..18883563 | 575..725 | 100 | <- | Plus |
arm_2R | 18883900..18883954 | 726..780 | 98 | | Plus |
BO12780.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-05-08
> BO12780.5prime
GAAGTTATCAGTCGACATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGAGCAAGCTTTCTAGACC
BO12780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-PA | 762 | CG9896-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-RA | 2043 | CG9896-RA | 267..1025 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22995324..22995623 | 519..220 | 1500 | 100 | Minus |
2R | 25286936 | 2R | 22995890..22996041 | 219..68 | 760 | 100 | Minus |
2R | 25286936 | 2R | 22994687..22994829 | 775..633 | 715 | 100 | Minus |
2R | 25286936 | 2R | 22994885..22995000 | 634..519 | 580 | 100 | Minus |
2R | 25286936 | 2R | 22996377..22996428 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:05:09 has no hits.
BO12780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:44 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:02 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-PA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:47 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 264..1025 | 14..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:40 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 264..1025 | 14..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:40 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22994687..22994827 | 635..775 | 100 | <- | Minus |
2R | 22994885..22994999 | 520..634 | 100 | <- | Minus |
2R | 22995324..22995623 | 220..519 | 100 | <- | Minus |
2R | 22995890..22996040 | 69..219 | 100 | <- | Minus |
2R | 22996377..22996431 | 14..68 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:47 Download gff for
BO12780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18882210..18882350 | 635..775 | 100 | <- | Minus |
arm_2R | 18882408..18882522 | 520..634 | 100 | <- | Minus |
arm_2R | 18882847..18883146 | 220..519 | 100 | <- | Minus |
arm_2R | 18883413..18883563 | 69..219 | 100 | <- | Minus |
arm_2R | 18883900..18883954 | 14..68 | 98 | | Minus |
BO12780.complete Sequence
793 bp assembled on 2006-10-11
GenBank Submission: FJ632564
> BO12780.complete
GAAGTTATCAGTCGACATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGAGCAAGCTTTCTAGACCAT
BO12780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-RA | 762 | CG9896-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-RA | 2043 | CG9896-RA | 267..1025 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22995324..22995623 | 519..220 | 1500 | 100 | Minus |
2R | 25286936 | 2R | 22995890..22996041 | 219..68 | 760 | 100 | Minus |
2R | 25286936 | 2R | 22994687..22994829 | 775..633 | 715 | 100 | Minus |
2R | 25286936 | 2R | 22994885..22995000 | 634..519 | 580 | 100 | Minus |
2R | 25286936 | 2R | 22996377..22996428 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:45:24 has no hits.
BO12780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:25 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 1..762 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:01 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 263..1024 | 14..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:07 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 267..1025 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:25 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 263..1024 | 14..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:47 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9896-RA | 267..1025 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:47 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22994685..22994827 | 635..777 | 98 | <- | Minus |
2R | 22994885..22994999 | 520..634 | 100 | <- | Minus |
2R | 22995324..22995623 | 220..519 | 100 | <- | Minus |
2R | 22995890..22996040 | 69..219 | 100 | <- | Minus |
2R | 22996377..22996428 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:07 Download gff for
BO12780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18882208..18882350 | 635..777 | 98 | <- | Minus |
arm_2R | 18882408..18882522 | 520..634 | 100 | <- | Minus |
arm_2R | 18883413..18883563 | 69..219 | 100 | <- | Minus |
arm_2R | 18883900..18883951 | 17..68 | 100 | | Minus |
arm_2R | 18882847..18883146 | 220..519 | 100 | <- | Minus |
BO12780.pep Sequence
Translation from 16 to 793
> BO12780.pep
MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT
SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT
NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN
QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY
ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR
GNRASFLDH
BO12780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9896-PA | 253 | CG9896-PA | 1..253 | 1..253 | 1353 | 100 | Plus |
CG13408-PA | 257 | CG13408-PA | 36..205 | 23..195 | 169 | 23.7 | Plus |