Clone BO12780 Report

Search the DGRC for BO12780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9896-RA
Protein status:BO12780.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO12780.3prime Sequence

791 bp (790 high quality bases) assembled on 2006-05-09

> BO12780.3prime
ATGGTCTAGAAAGCTTGCTCTGTTGCCTCTGCTGACCAGCAGTGTCAGCA
ATGTCCCTGTGAGCAGGAGTCCCAAACTACTGCCAGCTGCTCGCGTGGAG
CCATTGCCCTCGCCATCCCTGCAGATGCCCGGATTTCGGGTGAAGTCCTC
GCAGTAGATCTTGGTCAGGCTGTTGGCATATTTGTCCACCAGTTGACGCG
TAAACTTTGCCGCCTCATTGCCGCAGATCTTGCGTGCAGCATCCTCCGAG
CAATCCACAAGTTCGTTGATGGAGCAGCAAATGGTCTTGATGTTCTCGTT
CAGGGTGCCGTTCTCGGAGTTTTCCTGGTTCTTGTTTGGCTTGAGGAACA
CCATGGTCTCCCGATAACGATTGGAGCACACCTCGAACTCCTTCTTGGCC
ATTTCAGAGCAGGGCACATGCTTGAGGTACTCGTCCTGGAAGGCACCCTT
GTTGCACAGATCCCTGATGAACTGGTTGGTGTCGTGGTAGAGCTTGTTGA
ACTGATTCCTCTGCTGCAGATCCATGCAACGCCGGGTATAGCTCTGTATG
CACCTCACGCCCTTGCGCAGCTCATGACAAAGTTTTTCCAGTTCCTCCTT
CTTGGCCGGGCCAATCGAGAAGTCCGACGTTAAATGCAGCATATCAAGTG
GTTCGGCGCACTTGGTGAACTCCTCCTGGCCGCATTCCTCCGAATTGGCC
ACCTCCGCCGAGAGAAGTAGCAGGGCCGAGAAAACCAAAAGAGTCCAGCT
CCAGTTGCGATTCCACATTTGATGCATGTCGACTGATAACT

BO12780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-PA 762 CG9896-RA 1..759 777..19 3795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-RA 2043 CG9896-RA 267..1025 777..19 3795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22995324..22995623 275..574 1500 100 Plus
2R 25286936 2R 22995890..22996041 575..726 760 100 Plus
2R 25286936 2R 22994687..22994829 19..161 715 100 Plus
2R 25286936 2R 22994885..22995000 160..275 580 100 Plus
2R 25286936 2R 22996377..22996428 726..777 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:19:10 has no hits.

BO12780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:43 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-PA 1..762 18..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:00 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-PA 1..762 18..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:38:14 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 264..1025 19..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:55 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 264..1025 19..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:55 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22995890..22996040 575..725 100 <- Plus
2R 22994885..22994999 160..274 100 <- Plus
2R 22995324..22995623 275..574 100 <- Plus
2R 22994687..22994827 19..159 100 <- Plus
2R 22996377..22996431 726..780 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:38:14 Download gff for BO12780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18882210..18882350 19..159 100 <- Plus
arm_2R 18882408..18882522 160..274 100 <- Plus
arm_2R 18882847..18883146 275..574 100 <- Plus
arm_2R 18883413..18883563 575..725 100 <- Plus
arm_2R 18883900..18883954 726..780 98   Plus

BO12780.5prime Sequence

791 bp (790 high quality bases) assembled on 2006-05-08

> BO12780.5prime
GAAGTTATCAGTCGACATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGAGCAAGCTTTCTAGACC

BO12780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-PA 762 CG9896-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-RA 2043 CG9896-RA 267..1025 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22995324..22995623 519..220 1500 100 Minus
2R 25286936 2R 22995890..22996041 219..68 760 100 Minus
2R 25286936 2R 22994687..22994829 775..633 715 100 Minus
2R 25286936 2R 22994885..22995000 634..519 580 100 Minus
2R 25286936 2R 22996377..22996428 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:05:09 has no hits.

BO12780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:44 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-PA 1..762 17..776 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:02 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-PA 1..762 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:47 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 264..1025 14..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:40 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 264..1025 14..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:40 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22994687..22994827 635..775 100 <- Minus
2R 22994885..22994999 520..634 100 <- Minus
2R 22995324..22995623 220..519 100 <- Minus
2R 22995890..22996040 69..219 100 <- Minus
2R 22996377..22996431 14..68 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:47 Download gff for BO12780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18882210..18882350 635..775 100 <- Minus
arm_2R 18882408..18882522 520..634 100 <- Minus
arm_2R 18882847..18883146 220..519 100 <- Minus
arm_2R 18883413..18883563 69..219 100 <- Minus
arm_2R 18883900..18883954 14..68 98   Minus

BO12780.complete Sequence

793 bp assembled on 2006-10-11

GenBank Submission: FJ632564

> BO12780.complete
GAAGTTATCAGTCGACATGCATCAAATGTGGAATCGCAACTGGAGCTGGA
CTCTTTTGGTTTTCTCGGCCCTGCTACTTCTCTCGGCGGAGGTGGCCAAT
TCGGAGGAATGCGGCCAGGAGGAGTTCACCAAGTGCGCCGAACCACTTGA
TATGCTGCATTTAACGTCGGACTTCTCGATTGGCCCGGCCAAGAAGGAGG
AACTGGAAAAACTTTGTCATGAGCTGCGCAAGGGCGTGAGGTGCATACAG
AGCTATACCCGGCGTTGCATGGATCTGCAGCAGAGGAATCAGTTCAACAA
GCTCTACCACGACACCAACCAGTTCATCAGGGATCTGTGCAACAAGGGTG
CCTTCCAGGACGAGTACCTCAAGCATGTGCCCTGCTCTGAAATGGCCAAG
AAGGAGTTCGAGGTGTGCTCCAATCGTTATCGGGAGACCATGGTGTTCCT
CAAGCCAAACAAGAACCAGGAAAACTCCGAGAACGGCACCCTGAACGAGA
ACATCAAGACCATTTGCTGCTCCATCAACGAACTTGTGGATTGCTCGGAG
GATGCTGCACGCAAGATCTGCGGCAATGAGGCGGCAAAGTTTACGCGTCA
ACTGGTGGACAAATATGCCAACAGCCTGACCAAGATCTACTGCGAGGACT
TCACCCGAAATCCGGGCATCTGCAGGGATGGCGAGGGCAATGGCTCCACG
CGAGCAGCTGGCAGTAGTTTGGGACTCCTGCTCACAGGGACATTGCTGAC
ACTGCTGGTCAGCAGAGGCAACAGAGCAAGCTTTCTAGACCAT

BO12780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-RA 762 CG9896-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-RA 2043 CG9896-RA 267..1025 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22995324..22995623 519..220 1500 100 Minus
2R 25286936 2R 22995890..22996041 219..68 760 100 Minus
2R 25286936 2R 22994687..22994829 775..633 715 100 Minus
2R 25286936 2R 22994885..22995000 634..519 580 100 Minus
2R 25286936 2R 22996377..22996428 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:45:24 has no hits.

BO12780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:25 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 1..762 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:01 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 263..1024 14..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:07 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 267..1025 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:25 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 263..1024 14..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:47 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
CG9896-RA 267..1025 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:47 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22994685..22994827 635..777 98 <- Minus
2R 22994885..22994999 520..634 100 <- Minus
2R 22995324..22995623 220..519 100 <- Minus
2R 22995890..22996040 69..219 100 <- Minus
2R 22996377..22996428 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:07 Download gff for BO12780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18882208..18882350 635..777 98 <- Minus
arm_2R 18882408..18882522 520..634 100 <- Minus
arm_2R 18883413..18883563 69..219 100 <- Minus
arm_2R 18883900..18883951 17..68 100   Minus
arm_2R 18882847..18883146 220..519 100 <- Minus

BO12780.pep Sequence

Translation from 16 to 793

> BO12780.pep
MHQMWNRNWSWTLLVFSALLLLSAEVANSEECGQEEFTKCAEPLDMLHLT
SDFSIGPAKKEELEKLCHELRKGVRCIQSYTRRCMDLQQRNQFNKLYHDT
NQFIRDLCNKGAFQDEYLKHVPCSEMAKKEFEVCSNRYRETMVFLKPNKN
QENSENGTLNENIKTICCSINELVDCSEDAARKICGNEAAKFTRQLVDKY
ANSLTKIYCEDFTRNPGICRDGEGNGSTRAAGSSLGLLLTGTLLTLLVSR
GNRASFLDH

BO12780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9896-PA 253 CG9896-PA 1..253 1..253 1353 100 Plus
CG13408-PA 257 CG13408-PA 36..205 23..195 169 23.7 Plus