Clone BO12782 Report

Search the DGRC for BO12782

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG7787-RA
Protein status:BO12782.pep: validated full length
Sequenced Size:400

Clone Sequence Records

BO12782.3prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-08

> BO12782.3prime
ATGGTCTAGAAAGCTTGCGGTGTCCTTGTGCACCACCCTCTTGAGGGCCA
GATAGCAGTGGCGGGTGCTCAGATCATGGTAGCCCACAGGTCCTCGCTCG
CAGTCCGCGCAAACCAGAAACTTTCTGCCGTCCACCGTGTTGGAGAACCC
GATGTTCTCGAATGTCATCATGTCCTTGACCAGCCAGAAGTCTTTCAGTG
GCTCGCTGTTTAGGCTGTCCGCCGTTCGATCCTGCTTCTGCGTCATCAGT
GGCACATCCACCTCCTCCTGGTTGTAGGTGCCCTCTTGTGCTTTCAGCAT
CAAACAGTTGCAAAACTGGCAGCGCACATTTGATTTGTTTTTCCCATCGG
TGATTTGCTCGCTAAAATCAGCTTCCTCTGTCATGTCGACTGATAACT

BO12782.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-PA 369 CG7787-RA 1..366 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-RA 888 CG7787-RA 82..447 384..19 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8320600..8320844 263..19 1225 100 Minus
2L 23513712 2L 8320409..8320533 384..260 625 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:49 has no hits.

BO12782.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:47 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:07 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:04 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..452 12..384 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:03 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..452 12..384 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:03 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8320409..8320531 262..384 100 -> Minus
2L 8320602..8320849 12..261 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:04 Download gff for BO12782.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8320409..8320531 262..384 100 -> Minus
arm_2L 8320602..8320849 12..261 98   Minus

BO12782.5prime Sequence

398 bp (397 high quality bases) assembled on 2006-05-08

> BO12782.5prime
GAAGTTATCAGTCGACATGACAGAGGAAGCTGATTTTAGCGAGCAAATCA
CCGATGGGAAAAACAAATCAAATGTGCGCTGCCAGTTTTGCAACTGTTTG
ATGCTGAAAGCACAAGAGGGCACCTACAACCAGGAGGAGGTGGATGTGCC
ACTGATGACGCAGAAGCAGGATCGAACGGCGGACAGCCTAAACAGCGAGC
CACTGAAAGACTTCTGGCTGGTCAAGGACATGATGACATTCGAGAACATC
GGGTTCTCCAACACGGTGGACGGCAGAAAGTTTCTGGTTTGCGCGGACTG
CGAGCGAGGACCTGTGGGCTACCATGATCTGAGCACCCGCCACTGCTATC
TGGCCCTCAAGAGGGTGGTGCACAAGGACACCGCAAGCTTTCTAGACC

BO12782.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-PA 369 CG7787-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-RA 888 CG7787-RA 82..447 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8320600..8320844 138..382 1225 100 Plus
2L 23513712 2L 8320409..8320533 17..141 625 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:21:28 has no hits.

BO12782.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:48 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:08 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:52:46 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..452 17..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:06 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..452 17..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:06 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8320409..8320531 17..139 100 -> Plus
2L 8320602..8320849 140..389 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:52:46 Download gff for BO12782.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8320602..8320849 140..389 98   Plus
arm_2L 8320409..8320531 17..139 100 -> Plus

BO12782.complete Sequence

400 bp assembled on 2006-10-11

GenBank Submission: FJ632565

> BO12782.complete
GAAGTTATCAGTCGACATGACAGAGGAAGCTGATTTTAGCGAGCAAATCA
CCGATGGGAAAAACAAATCAAATGTGCGCTGCCAGTTTTGCAACTGTTTG
ATGCTGAAAGCACAAGAGGGCACCTACAACCAGGAGGAGGTGGATGTGCC
ACTGATGACGCAGAAGCAGGATCGAACGGCGGACAGCCTAAACAGCGAGC
CACTGAAAGACTTCTGGCTGGTCAAGGACATGATGACATTCGAGAACATC
GGGTTCTCCAACACGGTGGACGGCAGAAAGTTTCTGGTTTGCGCGGACTG
CGAGCGAGGACCTGTGGGCTACCATGATCTGAGCACCCGCCACTGCTATC
TGGCCCTCAAGAGGGTGGTGCACAAGGACACCGCAAGCTTTCTAGACCAT

BO12782.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-RA 369 CG7787-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-RA 888 CG7787-RA 82..447 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8320600..8320844 138..382 1225 100 Plus
2L 23513712 2L 8320409..8320533 17..141 625 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:20:17 has no hits.

BO12782.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:15 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:36 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 86..456 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:19 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..447 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:15 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 86..456 17..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:43 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
CG7787-RA 82..447 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:43 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8320409..8320531 17..139 100 -> Plus
2L 8320602..8320844 140..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:19 Download gff for BO12782.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8320409..8320531 17..139 100 -> Plus
arm_2L 8320602..8320844 140..384 99   Plus

BO12782.pep Sequence

Translation from 16 to 400

> BO12782.pep
MTEEADFSEQITDGKNKSNVRCQFCNCLMLKAQEGTYNQEEVDVPLMTQK
QDRTADSLNSEPLKDFWLVKDMMTFENIGFSNTVDGRKFLVCADCERGPV
GYHDLSTRHCYLALKRVVHKDTASFLDH

BO12782.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7787-PA 122 CG7787-PA 1..122 1..122 659 100 Plus