Clone Sequence Records
BO12784.3prime Sequence
518 bp (517 high quality bases) assembled on 2006-05-08
> BO12784.3prime
ATGGTCTAGAAAGCTTGCTTCGTCACCCGAGCGTGGTTTCTTAAAGTACT
GCTTCTTCATGGCATGCGGACTATCACTATCTCCGCCGATTTGCTTCCTT
TTAAAGTCCTTTTTGGTGTTAAACTTCTTGCTCATGCTGCCGGAGACCGT
GGGCGCCTTGTTGGCATAATAAGCCTTTACCATGTCTTGGTCGGATACCT
CCTTGGGCTGCTCCGGCCTTGTGCGGCCCTGCTTTTCCGCCAGATCCTGC
TCCATGAGAAGTTCTAGCTCCGGATTCATGCCGCGGAAACTGAGGCGTCC
GTCTATCAGGCCGGCGCATATCGAGTAGCTGGACTCCACCACAAAATTCG
AGGTGGAATTGAGCATCTTCTGGTTGATCTCGTTGGAGTACAGTGCCCTG
CTCTGCTCATCGTCTGCCTCCTTTTCCACTTTAACTTTTGTGCGCTGCAT
GAACTTCATGTCCAGGACACCACGCGAAAGTCTCGGCTTTGATTTGGATG
GCATGTCGACTGATAACT
BO12784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9250-PA | 489 | Mpp6-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpp6-RB | 680 | CG9250-RB | 127..612 | 504..19 | 2430 | 100 | Minus |
| Mpp6-RA | 1335 | CG9250-RA | 621..1106 | 504..19 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21156971..21157456 | 504..19 | 2430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:45:22 has no hits.
BO12784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:49 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:09 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9250-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:37 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 121..618 | 10..511 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:27 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 615..1112 | 10..511 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:27 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21156965..21157462 | 10..511 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:37 Download gff for
BO12784.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21156965..21157462 | 10..511 | 98 | | Minus |
BO12784.5prime Sequence
518 bp (517 high quality bases) assembled on 2006-05-08
> BO12784.5prime
GAAGTTATCAGTCGACATGCCATCCAAATCAAAGCCGAGACTTTCGCGTG
GTGTCCTGGACATGAAGTTCATGCAGCGCACAAAAGTTAAAGTGGAAAAG
GAGGCAGACGATGAGCAGAGCAGGGCACTGTACTCCAACGAGATCAACCA
GAAGATGCTCAATTCCACCTCGAATTTTGTGGTGGAGTCCAGCTACTCGA
TATGCGCCGGCCTGATAGACGGACGCCTCAGTTTCCGCGGCATGAATCCG
GAGCTAGAACTTCTCATGGAGCAGGATCTGGCGGAAAAGCAGGGCCGCAC
AAGGCCGGAGCAGCCCAAGGAGGTATCCGACCAAGACATGGTAAAGGCTT
ATTATGCCAACAAGGCGCCCACGGTCTCCGGCAGCATGAGCAAGAAGTTT
AACACCAAAAAGGACTTTAAAAGGAAGCAAATCGGCGGAGATAGTGATAG
TCCGCATGCCATGAAGAAGCAGTACTTTAAGAAACCACGCTCGGGTGACG
AAGCAAGCTTTCTAGACC
BO12784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9250-PA | 489 | Mpp6-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpp6-RB | 680 | CG9250-RB | 127..612 | 17..502 | 2430 | 100 | Plus |
| Mpp6-RA | 1335 | CG9250-RA | 621..1106 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21156971..21157456 | 17..502 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:32:58 has no hits.
BO12784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:50 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-PA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:11 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9250-PA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:07 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 121..618 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:31:06 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 615..1112 | 10..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:31:06 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21156965..21157462 | 10..511 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:07 Download gff for
BO12784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21156965..21157462 | 10..511 | 98 | | Plus |
BO12784.complete Sequence
520 bp assembled on 2006-10-11
GenBank Submission: FJ632566
> BO12784.complete
GAAGTTATCAGTCGACATGCCATCCAAATCAAAGCCGAGACTTTCGCGTG
GTGTCCTGGACATGAAGTTCATGCAGCGCACAAAAGTTAAAGTGGAAAAG
GAGGCAGACGATGAGCAGAGCAGGGCACTGTACTCCAACGAGATCAACCA
GAAGATGCTCAATTCCACCTCGAATTTTGTGGTGGAGTCCAGCTACTCGA
TATGCGCCGGCCTGATAGACGGACGCCTCAGTTTCCGCGGCATGAATCCG
GAGCTAGAACTTCTCATGGAGCAGGATCTGGCGGAAAAGCAGGGCCGCAC
AAGGCCGGAGCAGCCCAAGGAGGTATCCGACCAAGACATGGTAAAGGCTT
ATTATGCCAACAAGGCGCCCACGGTCTCCGGCAGCATGAGCAAGAAGTTT
AACACCAAAAAGGACTTTAAAAGGAAGCAAATCGGCGGAGATAGTGATAG
TCCGCATGCCATGAAGAAGCAGTACTTTAAGAAACCACGCTCGGGTGACG
AAGCAAGCTTTCTAGACCAT
BO12784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpp6-RB | 489 | CG9250-PB | 1..486 | 17..502 | 2430 | 100 | Plus |
| Mpp6-RA | 489 | CG9250-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpp6-RB | 680 | CG9250-RB | 127..612 | 17..502 | 2430 | 100 | Plus |
| Mpp6-RA | 1335 | CG9250-RA | 621..1106 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21156971..21157456 | 17..502 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:58 has no hits.
BO12784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:56 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:51 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 92..589 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:52 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 127..612 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:56 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 92..589 | 10..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:53 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpp6-RA | 621..1106 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:53 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21156971..21157456 | 17..504 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:52 Download gff for
BO12784.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21156971..21157456 | 17..504 | 99 | | Plus |
BO12784.pep Sequence
Translation from 16 to 520
> BO12784.pep
MPSKSKPRLSRGVLDMKFMQRTKVKVEKEADDEQSRALYSNEINQKMLNS
TSNFVVESSYSICAGLIDGRLSFRGMNPELELLMEQDLAEKQGRTRPEQP
KEVSDQDMVKAYYANKAPTVSGSMSKKFNTKKDFKRKQIGGDSDSPHAMK
KQYFKKPRSGDEASFLDH
BO12784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpp6-PB | 162 | CG9250-PB | 1..162 | 1..162 | 828 | 100 | Plus |
| Mpp6-PA | 162 | CG9250-PA | 1..162 | 1..162 | 828 | 100 | Plus |
