Clone Sequence Records
BO12788.3prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-08
> BO12788.3prime
ATGGTCTAGAAAGCTTGCGGCCTTAGCCTCGGGGGCGGGCTTGAAGCTCT
CGAAGCAATCGTACAACTTGGAGGCGGTATCACACTTGTTCTCGCCCTTG
ATGGTCCTGCACTTCTCCAGAGCCGCCTTGGTCTTCTCCTCGCCAATGAG
AGCGCCGAGCTTCTCCAGCACCACTGACTCCTGCAGCTCACCGTCCTTCA
GGGTTCCGACCTTCTCGAAGAAGCAGTTGGCAAAGCACTTGATGTTCTCG
GTGGGGTTATTGAAGTCCTTGGCATTGACCTTGGCCTTTTCCTCCTCGGT
AAGTTTCACTTCCTCGGCGCACTGCTCACGATGCTGCTTGGCCAGATCCT
TCTGCTCGTCGCTCAGATTAAGGGACGATCCAACAGCCAGAGTCACAAAA
AGAGCACTCAAAGCGATCACGAAGTAGGAGTTCATGTCGACTGATAACT
BO12788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11797-PA | 420 | Obp56a-RA | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56a-RA | 547 | CG11797-RA | 46..464 | 437..19 | 2095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19698068..19698425 | 376..19 | 1790 | 100 | Minus |
2R | 25286936 | 2R | 19697768..19697829 | 437..376 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:40:30 has no hits.
BO12788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:57 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11797-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:20 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11797-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:47 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 35..469 | 14..449 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:41 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 35..469 | 14..449 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:41 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19698069..19698430 | 14..375 | 99 | | Minus |
2R | 19697757..19697829 | 376..449 | 93 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:47 Download gff for
BO12788.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15585262..15585334 | 376..449 | 93 | -> | Minus |
arm_2R | 15585574..15585935 | 14..375 | 99 | | Minus |
BO12788.5prime Sequence
449 bp (448 high quality bases) assembled on 2006-05-08
> BO12788.5prime
GAAGTTATCAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTC
TTTTTGTGACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAG
AAGGATCTGGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACT
TACCGAGGAGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCA
CCGAGAACATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACC
CTGAAGGACGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGC
TCTCATTGGCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCA
TCAAGGGCGAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTC
GAGAGCTTCAAGCCCGCCCCCGAGGCTAAGGCCGCAAGCTTTCTAGACC
BO12788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11797-PA | 420 | Obp56a-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56a-RA | 547 | CG11797-RA | 46..464 | 15..433 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19698068..19698425 | 76..433 | 1790 | 100 | Plus |
2R | 25286936 | 2R | 19697768..19697829 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:08:58 has no hits.
BO12788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:58 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11797-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:22 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11797-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:25 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 34..469 | 2..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:41 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 34..469 | 2..438 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:41 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19697756..19697829 | 2..76 | 93 | -> | Plus |
2R | 19698069..19698430 | 77..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:25 Download gff for
BO12788.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15585261..15585334 | 2..76 | 93 | -> | Plus |
arm_2R | 15585574..15585935 | 77..438 | 99 | | Plus |
BO12788.complete Sequence
451 bp assembled on 2006-10-11
GenBank Submission: FJ632567
> BO12788.complete
GAAGTTATCAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTC
TTTTTGTGACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAG
AAGGATCTGGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACT
TACCGAGGAGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCA
CCGAGAACATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACC
CTGAAGGACGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGC
TCTCATTGGCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCA
TCAAGGGCGAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTC
GAGAGCTTCAAGCCCGCCCCCGAGGCTAAGGCCGCAAGCTTTCTAGACCA
T
BO12788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56a-RA | 420 | CG11797-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56a-RA | 547 | CG11797-RA | 46..464 | 15..433 | 2095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19698068..19698425 | 76..433 | 1790 | 100 | Plus |
2R | 25286936 | 2R | 19697768..19697829 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:50:24 has no hits.
BO12788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:42 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:22 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 34..469 | 2..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:25 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 48..464 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:42 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 34..469 | 2..438 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:45 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56a-RA | 48..464 | 17..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:45 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19697770..19697829 | 17..76 | 100 | -> | Plus |
2R | 19698069..19698425 | 77..435 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:25 Download gff for
BO12788.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15585574..15585930 | 77..435 | 99 | | Plus |
arm_2R | 15585275..15585334 | 17..76 | 100 | -> | Plus |
BO12788.pep Sequence
Translation from 16 to 451
> BO12788.pep
MNSYFVIALSALFVTLAVGSSLNLSDEQKDLAKQHREQCAEEVKLTEEEK
AKVNAKDFNNPTENIKCFANCFFEKVGTLKDGELQESVVLEKLGALIGEE
KTKAALEKCRTIKGENKCDTASKLYDCFESFKPAPEAKAASFLDH
BO12788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56a-PA | 139 | CG11797-PA | 1..139 | 1..139 | 711 | 100 | Plus |
Obp56d-PB | 131 | CG11218-PB | 3..124 | 5..128 | 265 | 42.7 | Plus |
Obp56d-PA | 131 | CG11218-PA | 3..124 | 5..128 | 265 | 42.7 | Plus |
Obp56e-PA | 132 | CG8462-PA | 1..125 | 1..128 | 245 | 37.5 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..124 | 1..128 | 234 | 36.7 | Plus |