Clone BO12788 Report

Search the DGRC for BO12788

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptObp56a-RA
Protein status:BO12788.pep: validated full length
Sequenced Size:451

Clone Sequence Records

BO12788.3prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-08

> BO12788.3prime
ATGGTCTAGAAAGCTTGCGGCCTTAGCCTCGGGGGCGGGCTTGAAGCTCT
CGAAGCAATCGTACAACTTGGAGGCGGTATCACACTTGTTCTCGCCCTTG
ATGGTCCTGCACTTCTCCAGAGCCGCCTTGGTCTTCTCCTCGCCAATGAG
AGCGCCGAGCTTCTCCAGCACCACTGACTCCTGCAGCTCACCGTCCTTCA
GGGTTCCGACCTTCTCGAAGAAGCAGTTGGCAAAGCACTTGATGTTCTCG
GTGGGGTTATTGAAGTCCTTGGCATTGACCTTGGCCTTTTCCTCCTCGGT
AAGTTTCACTTCCTCGGCGCACTGCTCACGATGCTGCTTGGCCAGATCCT
TCTGCTCGTCGCTCAGATTAAGGGACGATCCAACAGCCAGAGTCACAAAA
AGAGCACTCAAAGCGATCACGAAGTAGGAGTTCATGTCGACTGATAACT

BO12788.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11797-PA 420 Obp56a-RA 1..417 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56a-RA 547 CG11797-RA 46..464 437..19 2095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19698068..19698425 376..19 1790 100 Minus
2R 25286936 2R 19697768..19697829 437..376 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:40:30 has no hits.

BO12788.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:57 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11797-PA 1..420 15..435 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:20 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11797-PA 1..420 15..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:47 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 35..469 14..449 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:41 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 35..469 14..449 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:41 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19698069..19698430 14..375 99   Minus
2R 19697757..19697829 376..449 93 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:47 Download gff for BO12788.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15585262..15585334 376..449 93 -> Minus
arm_2R 15585574..15585935 14..375 99   Minus

BO12788.5prime Sequence

449 bp (448 high quality bases) assembled on 2006-05-08

> BO12788.5prime
GAAGTTATCAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTC
TTTTTGTGACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAG
AAGGATCTGGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACT
TACCGAGGAGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCA
CCGAGAACATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACC
CTGAAGGACGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGC
TCTCATTGGCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCA
TCAAGGGCGAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTC
GAGAGCTTCAAGCCCGCCCCCGAGGCTAAGGCCGCAAGCTTTCTAGACC

BO12788.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11797-PA 420 Obp56a-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56a-RA 547 CG11797-RA 46..464 15..433 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19698068..19698425 76..433 1790 100 Plus
2R 25286936 2R 19697768..19697829 15..76 310 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:08:58 has no hits.

BO12788.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:45:58 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11797-PA 1..420 17..437 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:22 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11797-PA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:25 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 34..469 2..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:41 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 34..469 2..438 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:41 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19697756..19697829 2..76 93 -> Plus
2R 19698069..19698430 77..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:25 Download gff for BO12788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15585261..15585334 2..76 93 -> Plus
arm_2R 15585574..15585935 77..438 99   Plus

BO12788.complete Sequence

451 bp assembled on 2006-10-11

GenBank Submission: FJ632567

> BO12788.complete
GAAGTTATCAGTCGACATGAACTCCTACTTCGTGATCGCTTTGAGTGCTC
TTTTTGTGACTCTGGCTGTTGGATCGTCCCTTAATCTGAGCGACGAGCAG
AAGGATCTGGCCAAGCAGCATCGTGAGCAGTGCGCCGAGGAAGTGAAACT
TACCGAGGAGGAAAAGGCCAAGGTCAATGCCAAGGACTTCAATAACCCCA
CCGAGAACATCAAGTGCTTTGCCAACTGCTTCTTCGAGAAGGTCGGAACC
CTGAAGGACGGTGAGCTGCAGGAGTCAGTGGTGCTGGAGAAGCTCGGCGC
TCTCATTGGCGAGGAGAAGACCAAGGCGGCTCTGGAGAAGTGCAGGACCA
TCAAGGGCGAGAACAAGTGTGATACCGCCTCCAAGTTGTACGATTGCTTC
GAGAGCTTCAAGCCCGCCCCCGAGGCTAAGGCCGCAAGCTTTCTAGACCA
T

BO12788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56a-RA 420 CG11797-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56a-RA 547 CG11797-RA 46..464 15..433 2095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19698068..19698425 76..433 1790 100 Plus
2R 25286936 2R 19697768..19697829 15..76 310 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:50:24 has no hits.

BO12788.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:42 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:22 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 34..469 2..438 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:25 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 48..464 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:42 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 34..469 2..438 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:45 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56a-RA 48..464 17..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:45 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19697770..19697829 17..76 100 -> Plus
2R 19698069..19698425 77..435 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:25 Download gff for BO12788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15585574..15585930 77..435 99   Plus
arm_2R 15585275..15585334 17..76 100 -> Plus

BO12788.pep Sequence

Translation from 16 to 451

> BO12788.pep
MNSYFVIALSALFVTLAVGSSLNLSDEQKDLAKQHREQCAEEVKLTEEEK
AKVNAKDFNNPTENIKCFANCFFEKVGTLKDGELQESVVLEKLGALIGEE
KTKAALEKCRTIKGENKCDTASKLYDCFESFKPAPEAKAASFLDH

BO12788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56a-PA 139 CG11797-PA 1..139 1..139 711 100 Plus
Obp56d-PB 131 CG11218-PB 3..124 5..128 265 42.7 Plus
Obp56d-PA 131 CG11218-PA 3..124 5..128 265 42.7 Plus
Obp56e-PA 132 CG8462-PA 1..125 1..128 245 37.5 Plus
Obp56e-PB 131 CG8462-PB 1..124 1..128 234 36.7 Plus