Clone Sequence Records
BO12790.3prime Sequence
794 bp (793 high quality bases) assembled on 2006-05-08
> BO12790.3prime
ATGGTCTAGAAAGCTTGCCACCTTGGCCGCCCGATGGCCGAAAATAGAAG
AGCCAACGCGCACCACTGTGCTGCCCATTTCGATCGCCTTGTCGAAGTCG
TTGGACATTCCCATGGAGACGAGCACCGAGTCCGGGGCCAAGGAGTGCGC
CTCACATATGGATCTGTGCACCTGCATTAGGGACACGAAATCCGGATTGG
GTCCATTGCTGTAGTCAAAACCAAATGCACCAATGGTCATTATGCCCATC
AGGTTGAGGTGTTTAAGGTTGCTCTTGATGTACTGGTAGAGTGCAGGAGC
ATCTTTCGCCTCTATTCCGCTTTTAACGTCTTCACCACTAGTGTTGATCT
GGATGAGCACCTGCAATGGCTCCTCAGGGGTGGGCTGTCGCTTAGACCAG
GCTGCGTCCAGTTTGGTGGCCAACTTCTCGCTATCTACGGTCTGGATCAT
ATGCAGATTTGGCACAGAAAGGATCTTGTTGATCTTGTTGCTTTGCATGT
GGCCTATGAAGTGCCACCTGATGTCGGGGCACTTGGCCAGAATGTCCGGG
TGGCGGCTCTTCTCCTCCAGCTCCTGTACATAGTTCTCACCGAAGTCTCT
TTGTCCGCCCTCGTAAGCCTCGATTACGGCCTCCGCTGGCTTTGTTTTGC
TTACAGCAACGAGCAGCGGCCTGGCAGCTTGAACTTCTTTGGGCCGCTGG
AGGAGCACCTCGTCTATGCGCTTCAACACGTGCTGCAGGCCGGCTTTGAC
GTCGAATTCCGCCATTGTGCGTCTTAGCATGTCGACTGATAACT
BO12790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-PA | 765 | CG1983-RA | 1..762 | 780..19 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 1582 | CG1983-RB | 87..848 | 780..19 | 3810 | 100 | Minus |
CG1983-RA | 1137 | CG1983-RA | 87..848 | 780..19 | 3810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30176643..30176885 | 85..327 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 30177177..30177389 | 475..687 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 30176944..30177093 | 327..476 | 750 | 100 | Plus |
2R | 25286936 | 2R | 2083319..2083441 | 327..205 | 510 | 94.3 | Minus |
3R | 32079331 | 3R | 30177453..30177546 | 687..780 | 470 | 100 | Plus |
3R | 32079331 | 3R | 30176520..30176586 | 19..85 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:39:47 has no hits.
BO12790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:01 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:26 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:58 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..852 | 14..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:18 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..852 | 14..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:18 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30176643..30176884 | 85..326 | 100 | <- | Plus |
3R | 30176944..30177091 | 327..474 | 100 | <- | Plus |
3R | 30177177..30177389 | 475..687 | 100 | <- | Plus |
3R | 30177454..30177555 | 688..792 | 95 | | Plus |
3R | 30176516..30176585 | 14..84 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:58 Download gff for
BO12790.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26002238..26002307 | 14..84 | 97 | <- | Plus |
arm_3R | 26002365..26002606 | 85..326 | 100 | <- | Plus |
arm_3R | 26002666..26002813 | 327..474 | 100 | <- | Plus |
arm_3R | 26002899..26003111 | 475..687 | 100 | <- | Plus |
arm_3R | 26003176..26003277 | 688..792 | 95 | | Plus |
BO12790.5prime Sequence
794 bp (793 high quality bases) assembled on 2006-05-08
> BO12790.5prime
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGGCAAGCTTTCTAGACC
BO12790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-PA | 765 | CG1983-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 1582 | CG1983-RB | 87..848 | 17..778 | 3810 | 100 | Plus |
CG1983-RA | 1137 | CG1983-RA | 87..848 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30176643..30176885 | 712..470 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 30177177..30177389 | 322..110 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 30176944..30177093 | 470..321 | 750 | 100 | Minus |
2R | 25286936 | 2R | 2083319..2083441 | 470..592 | 510 | 94.3 | Plus |
3R | 32079331 | 3R | 30177453..30177546 | 110..17 | 470 | 100 | Minus |
3R | 32079331 | 3R | 30176520..30176586 | 778..712 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:34:13 has no hits.
BO12790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:02 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:27 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-PA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:50 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..852 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:54 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..852 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:54 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30176944..30177091 | 323..470 | 100 | <- | Minus |
3R | 30177177..30177389 | 110..322 | 100 | <- | Minus |
3R | 30177454..30177555 | 5..109 | 95 | | Minus |
3R | 30176516..30176585 | 713..783 | 97 | <- | Minus |
3R | 30176643..30176884 | 471..712 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:50 Download gff for
BO12790.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26002238..26002307 | 713..783 | 97 | <- | Minus |
arm_3R | 26002365..26002606 | 471..712 | 100 | <- | Minus |
arm_3R | 26002666..26002813 | 323..470 | 100 | <- | Minus |
arm_3R | 26002899..26003111 | 110..322 | 100 | <- | Minus |
arm_3R | 26003176..26003277 | 5..109 | 95 | | Minus |
BO12790.complete Sequence
796 bp assembled on 2006-10-11
GenBank Submission: FJ632568
> BO12790.complete
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGGCAAGCTTTCTAGACCAT
BO12790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 765 | CG1983-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG1983-RA | 765 | CG1983-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-RB | 1582 | CG1983-RB | 87..848 | 17..778 | 3810 | 100 | Plus |
CG1983-RA | 1137 | CG1983-RA | 87..848 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30176643..30176885 | 712..470 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 30177177..30177389 | 322..110 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 30176944..30177093 | 470..321 | 750 | 100 | Minus |
2R | 25286936 | 2R | 2083319..2083441 | 470..592 | 510 | 94.3 | Plus |
3R | 32079331 | 3R | 30177453..30177546 | 110..17 | 470 | 100 | Minus |
3R | 32079331 | 3R | 30176520..30176586 | 778..712 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:23 has no hits.
BO12790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:37 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 1..765 | 17..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:48 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 59..824 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:04 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..848 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:37 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 59..824 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:03 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1983-RA | 87..848 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:03 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30177177..30177389 | 110..322 | 100 | <- | Minus |
3R | 30177454..30177546 | 17..109 | 100 | | Minus |
3R | 30176944..30177091 | 323..470 | 100 | <- | Minus |
3R | 30176518..30176585 | 713..780 | 97 | <- | Minus |
3R | 30176643..30176884 | 471..712 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:04 Download gff for
BO12790.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26002899..26003111 | 110..322 | 100 | <- | Minus |
arm_3R | 26002240..26002307 | 713..780 | 97 | <- | Minus |
arm_3R | 26002365..26002606 | 471..712 | 100 | <- | Minus |
arm_3R | 26002666..26002813 | 323..470 | 100 | <- | Minus |
arm_3R | 26003176..26003268 | 17..109 | 100 | | Minus |
BO12790.pep Sequence
Translation from 16 to 796
> BO12790.pep
MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE
AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI
NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE
DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS
LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR
AAKVASFLDH
BO12790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1983-PB | 254 | CG1983-PB | 1..254 | 1..254 | 1301 | 100 | Plus |
CG1983-PA | 254 | CG1983-PA | 1..254 | 1..254 | 1301 | 100 | Plus |