Clone BO12790 Report

Search the DGRC for BO12790

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG1983-RA
Protein status:BO12790.pep: validated full length
Sequenced Size:796

Clone Sequence Records

BO12790.3prime Sequence

794 bp (793 high quality bases) assembled on 2006-05-08

> BO12790.3prime
ATGGTCTAGAAAGCTTGCCACCTTGGCCGCCCGATGGCCGAAAATAGAAG
AGCCAACGCGCACCACTGTGCTGCCCATTTCGATCGCCTTGTCGAAGTCG
TTGGACATTCCCATGGAGACGAGCACCGAGTCCGGGGCCAAGGAGTGCGC
CTCACATATGGATCTGTGCACCTGCATTAGGGACACGAAATCCGGATTGG
GTCCATTGCTGTAGTCAAAACCAAATGCACCAATGGTCATTATGCCCATC
AGGTTGAGGTGTTTAAGGTTGCTCTTGATGTACTGGTAGAGTGCAGGAGC
ATCTTTCGCCTCTATTCCGCTTTTAACGTCTTCACCACTAGTGTTGATCT
GGATGAGCACCTGCAATGGCTCCTCAGGGGTGGGCTGTCGCTTAGACCAG
GCTGCGTCCAGTTTGGTGGCCAACTTCTCGCTATCTACGGTCTGGATCAT
ATGCAGATTTGGCACAGAAAGGATCTTGTTGATCTTGTTGCTTTGCATGT
GGCCTATGAAGTGCCACCTGATGTCGGGGCACTTGGCCAGAATGTCCGGG
TGGCGGCTCTTCTCCTCCAGCTCCTGTACATAGTTCTCACCGAAGTCTCT
TTGTCCGCCCTCGTAAGCCTCGATTACGGCCTCCGCTGGCTTTGTTTTGC
TTACAGCAACGAGCAGCGGCCTGGCAGCTTGAACTTCTTTGGGCCGCTGG
AGGAGCACCTCGTCTATGCGCTTCAACACGTGCTGCAGGCCGGCTTTGAC
GTCGAATTCCGCCATTGTGCGTCTTAGCATGTCGACTGATAACT

BO12790.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-PA 765 CG1983-RA 1..762 780..19 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 1582 CG1983-RB 87..848 780..19 3810 100 Minus
CG1983-RA 1137 CG1983-RA 87..848 780..19 3810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30176643..30176885 85..327 1215 100 Plus
3R 32079331 3R 30177177..30177389 475..687 1065 100 Plus
3R 32079331 3R 30176944..30177093 327..476 750 100 Plus
2R 25286936 2R 2083319..2083441 327..205 510 94.3 Minus
3R 32079331 3R 30177453..30177546 687..780 470 100 Plus
3R 32079331 3R 30176520..30176586 19..85 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:39:47 has no hits.

BO12790.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:01 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-PA 1..765 15..780 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:26 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-PA 1..765 15..780 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:58 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..852 14..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:18 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..852 14..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:18 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30176643..30176884 85..326 100 <- Plus
3R 30176944..30177091 327..474 100 <- Plus
3R 30177177..30177389 475..687 100 <- Plus
3R 30177454..30177555 688..792 95   Plus
3R 30176516..30176585 14..84 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:58 Download gff for BO12790.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26002238..26002307 14..84 97 <- Plus
arm_3R 26002365..26002606 85..326 100 <- Plus
arm_3R 26002666..26002813 327..474 100 <- Plus
arm_3R 26002899..26003111 475..687 100 <- Plus
arm_3R 26003176..26003277 688..792 95   Plus

BO12790.5prime Sequence

794 bp (793 high quality bases) assembled on 2006-05-08

> BO12790.5prime
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGGCAAGCTTTCTAGACC

BO12790.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-PA 765 CG1983-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 1582 CG1983-RB 87..848 17..778 3810 100 Plus
CG1983-RA 1137 CG1983-RA 87..848 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30176643..30176885 712..470 1215 100 Minus
3R 32079331 3R 30177177..30177389 322..110 1065 100 Minus
3R 32079331 3R 30176944..30177093 470..321 750 100 Minus
2R 25286936 2R 2083319..2083441 470..592 510 94.3 Plus
3R 32079331 3R 30177453..30177546 110..17 470 100 Minus
3R 32079331 3R 30176520..30176586 778..712 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:34:13 has no hits.

BO12790.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:02 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-PA 1..765 17..782 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:27 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-PA 1..765 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:18:50 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..852 17..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:47:54 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..852 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:47:54 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30176944..30177091 323..470 100 <- Minus
3R 30177177..30177389 110..322 100 <- Minus
3R 30177454..30177555 5..109 95   Minus
3R 30176516..30176585 713..783 97 <- Minus
3R 30176643..30176884 471..712 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:18:50 Download gff for BO12790.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26002238..26002307 713..783 97 <- Minus
arm_3R 26002365..26002606 471..712 100 <- Minus
arm_3R 26002666..26002813 323..470 100 <- Minus
arm_3R 26002899..26003111 110..322 100 <- Minus
arm_3R 26003176..26003277 5..109 95   Minus

BO12790.complete Sequence

796 bp assembled on 2006-10-11

GenBank Submission: FJ632568

> BO12790.complete
GAAGTTATCAGTCGACATGCTAAGACGCACAATGGCGGAATTCGACGTCA
AAGCCGGCCTGCAGCACGTGTTGAAGCGCATAGACGAGGTGCTCCTCCAG
CGGCCCAAAGAAGTTCAAGCTGCCAGGCCGCTGCTCGTTGCTGTAAGCAA
AACAAAGCCAGCGGAGGCCGTAATCGAGGCTTACGAGGGCGGACAAAGAG
ACTTCGGTGAGAACTATGTACAGGAGCTGGAGGAGAAGAGCCGCCACCCG
GACATTCTGGCCAAGTGCCCCGACATCAGGTGGCACTTCATAGGCCACAT
GCAAAGCAACAAGATCAACAAGATCCTTTCTGTGCCAAATCTGCATATGA
TCCAGACCGTAGATAGCGAGAAGTTGGCCACCAAACTGGACGCAGCCTGG
TCTAAGCGACAGCCCACCCCTGAGGAGCCATTGCAGGTGCTCATCCAGAT
CAACACTAGTGGTGAAGACGTTAAAAGCGGAATAGAGGCGAAAGATGCTC
CTGCACTCTACCAGTACATCAAGAGCAACCTTAAACACCTCAACCTGATG
GGCATAATGACCATTGGTGCATTTGGTTTTGACTACAGCAATGGACCCAA
TCCGGATTTCGTGTCCCTAATGCAGGTGCACAGATCCATATGTGAGGCGC
ACTCCTTGGCCCCGGACTCGGTGCTCGTCTCCATGGGAATGTCCAACGAC
TTCGACAAGGCGATCGAAATGGGCAGCACAGTGGTGCGCGTTGGCTCTTC
TATTTTCGGCCATCGGGCGGCCAAGGTGGCAAGCTTTCTAGACCAT

BO12790.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 765 CG1983-PB 1..762 17..778 3810 100 Plus
CG1983-RA 765 CG1983-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-RB 1582 CG1983-RB 87..848 17..778 3810 100 Plus
CG1983-RA 1137 CG1983-RA 87..848 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30176643..30176885 712..470 1215 100 Minus
3R 32079331 3R 30177177..30177389 322..110 1065 100 Minus
3R 32079331 3R 30176944..30177093 470..321 750 100 Minus
2R 25286936 2R 2083319..2083441 470..592 510 94.3 Plus
3R 32079331 3R 30177453..30177546 110..17 470 100 Minus
3R 32079331 3R 30176520..30176586 778..712 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:31:23 has no hits.

BO12790.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:37 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 1..765 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:48 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 59..824 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:04 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..848 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:37 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 59..824 17..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:03 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
CG1983-RA 87..848 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:03 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30177177..30177389 110..322 100 <- Minus
3R 30177454..30177546 17..109 100   Minus
3R 30176944..30177091 323..470 100 <- Minus
3R 30176518..30176585 713..780 97 <- Minus
3R 30176643..30176884 471..712 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:04 Download gff for BO12790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26002899..26003111 110..322 100 <- Minus
arm_3R 26002240..26002307 713..780 97 <- Minus
arm_3R 26002365..26002606 471..712 100 <- Minus
arm_3R 26002666..26002813 323..470 100 <- Minus
arm_3R 26003176..26003268 17..109 100   Minus

BO12790.pep Sequence

Translation from 16 to 796

> BO12790.pep
MLRRTMAEFDVKAGLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAE
AVIEAYEGGQRDFGENYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKI
NKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTSGE
DVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNGPNPDFVS
LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHR
AAKVASFLDH

BO12790.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1983-PB 254 CG1983-PB 1..254 1..254 1301 100 Plus
CG1983-PA 254 CG1983-PA 1..254 1..254 1301 100 Plus