Clone BO12791 Report

Search the DGRC for BO12791

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptveli-RA
Protein status:BO12791.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO12791.3prime Sequence

617 bp (616 high quality bases) assembled on 2006-05-09

> BO12791.3prime
ATGGTCTAGAAAGCTTGCTTGGCGACGACGTGTGTTGCGTTGCTTATCAA
ATCGCATTTCCATTTCCTCGAGAACCTTTGGTGTGTAGCGTACCACCAGC
TTTACAGATCCGACAGCTTGCTTTAATAGCTCTACGGCCTTCTCGTGGTT
TTCTCCTTCGACAGACACACCATTCACAGACAAAAGTTGATCTCCCCTTT
TCAGACCACCATGCCTGTCAGCCACGCCTCCAGGTATTATTCGGGATATA
TAGATGGGCGAGTTTTGCTCCTTGCCCCCCATTACATTGAAACCCAAGCC
CTCCTCCGTTTTCGGGAGCTCGACGACTCTGGGATGAGCGTGCCCCTCGC
TGGCTGCGAAGGCTGCCACAGTGGCCTTGGCAGTGGCGGATGCCCTCACG
TCGTGGGAGCCCTGGATGTCCACCGTCTCGTAGACGTGCTCGTACACCTC
CCGCACGGAGGTCATGAAGTCCGAGTTGAGCACCTTCTGCAGGGCGGCCA
GTTTTGTCGTGGGGAAGTCGCCACTCGCTTGCAGCTTTTCCAAGAGCTCT
ATCGATCTTTTGACATCTCTGGACAAAGTCAGTGGTTCTGCGTTATCGGC
CATGTCGACTGATAACT

BO12791.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7662-PA 588 veli-RA 1..585 603..19 2925 100 Minus
CG7662-PB 735 veli-RB 1..305 603..299 1525 100 Minus
CG7662-PB 735 veli-RB 596..732 155..19 685 100 Minus
CG7662-PB 735 veli-RB 457..591 300..166 675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 894 CG7662-RA 78..662 603..19 2925 100 Minus
veli-RC 1047 CG7662-RC 78..382 603..299 1525 100 Minus
veli-RC 1047 CG7662-RC 534..815 300..19 1410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25065147..25065416 299..568 1350 100 Plus
3R 32079331 3R 25064650..25064797 19..166 740 100 Plus
3R 32079331 3R 25064861..25064995 166..300 675 100 Plus
3R 32079331 3R 25065478..25065514 567..603 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:59:16 has no hits.

BO12791.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:03 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
veli-PA 1..588 15..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:29 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7662-PA 1..588 15..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:45 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
veli-RA 71..666 14..611 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:32:55 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
veli-RA 71..666 14..611 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:32:55 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25065148..25065414 300..566 100 <- Plus
3R 25065478..25065521 567..611 93   Plus
3R 25064646..25064796 14..165 98 <- Plus
3R 25064861..25064994 166..299 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:45 Download gff for BO12791.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20890368..20890518 14..165 98 <- Plus
arm_3R 20890583..20890716 166..299 100 <- Plus
arm_3R 20890870..20891136 300..566 100 <- Plus
arm_3R 20891200..20891243 567..611 93   Plus

BO12791.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-05-08

> BO12791.5prime
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
AGCAAGCTTTCTAGACC

BO12791.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7662-PA 588 veli-RA 1..585 17..601 2925 100 Plus
CG7662-PB 735 veli-RB 1..305 17..321 1525 100 Plus
CG7662-PB 735 veli-RB 596..732 465..601 685 100 Plus
CG7662-PB 735 veli-RB 457..591 320..454 675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 894 CG7662-RA 78..662 17..601 2925 100 Plus
veli-RC 1047 CG7662-RC 78..382 17..321 1525 100 Plus
veli-RC 1047 CG7662-RC 534..815 320..601 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25065147..25065416 321..52 1350 100 Minus
3R 32079331 3R 25064650..25064797 601..454 740 100 Minus
3R 32079331 3R 25064861..25064995 454..320 675 100 Minus
3R 32079331 3R 25065478..25065514 53..17 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:14:50 has no hits.

BO12791.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:04 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
veli-PA 1..588 17..605 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:30 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7662-PA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:51 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
veli-RA 71..666 9..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:11 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
veli-RA 71..666 9..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:11 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25064646..25064796 455..606 98 <- Minus
3R 25064861..25064994 321..454 100 <- Minus
3R 25065148..25065414 54..320 100 <- Minus
3R 25065478..25065521 9..53 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:51 Download gff for BO12791.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20890368..20890518 455..606 98 <- Minus
arm_3R 20890583..20890716 321..454 100 <- Minus
arm_3R 20890870..20891136 54..320 100 <- Minus
arm_3R 20891200..20891243 9..53 93   Minus

BO12791.complete Sequence

619 bp assembled on 2006-10-11

GenBank Submission: FJ632569

> BO12791.complete
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
AGCAAGCTTTCTAGACCAT

BO12791.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 588 CG7662-PA 1..585 17..601 2925 100 Plus
veli-RC 741 CG7662-PC 1..305 17..321 1525 100 Plus
veli-RC 741 CG7662-PC 457..738 320..601 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
veli-RA 894 CG7662-RA 78..662 17..601 2925 100 Plus
veli-RC 1047 CG7662-RC 78..382 17..321 1525 100 Plus
veli-RC 1047 CG7662-RC 534..815 320..601 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25065147..25065416 321..52 1350 100 Minus
3R 32079331 3R 25064650..25064797 601..454 740 100 Minus
3R 32079331 3R 25064861..25064995 454..320 675 100 Minus
3R 32079331 3R 25065478..25065514 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:18:42 has no hits.

BO12791.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:30 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:54 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 75..670 9..606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:35 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 78..662 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:30 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 76..671 9..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:20 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
veli-RA 78..662 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:20 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25064648..25064796 455..603 98 <- Minus
3R 25064861..25064994 321..454 100 <- Minus
3R 25065148..25065414 54..320 100 <- Minus
3R 25065478..25065514 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:35 Download gff for BO12791.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20890370..20890518 455..603 98 <- Minus
arm_3R 20890583..20890716 321..454 100 <- Minus
arm_3R 20890870..20891136 54..320 100 <- Minus
arm_3R 20891200..20891236 17..53 100   Minus

BO12791.pep Sequence

Translation from 16 to 619

> BO12791.pep
MADNAEPLTLSRDVKRSIELLEKLQASGDFPTTKLAALQKVLNSDFMTSV
REVYEHVYETVDIQGSHDVRASATAKATVAAFAASEGHAHPRVVELPKTE
EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG
ENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQRNTRRRQASFLD
H

BO12791.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
veli-PA 195 CG7662-PA 1..195 1..195 977 100 Plus
veli-PC 246 CG7662-PC 1..246 1..195 915 79.3 Plus
dlg1-PK 911 CG1725-PK 426..540 72..187 206 39.7 Plus
dlg1-PH 911 CG1725-PH 426..540 72..187 206 39.7 Plus
dlg1-PT 943 CG1725-PT 473..587 72..187 206 39.7 Plus