Clone Sequence Records
BO12791.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-05-09
> BO12791.3prime
ATGGTCTAGAAAGCTTGCTTGGCGACGACGTGTGTTGCGTTGCTTATCAA
ATCGCATTTCCATTTCCTCGAGAACCTTTGGTGTGTAGCGTACCACCAGC
TTTACAGATCCGACAGCTTGCTTTAATAGCTCTACGGCCTTCTCGTGGTT
TTCTCCTTCGACAGACACACCATTCACAGACAAAAGTTGATCTCCCCTTT
TCAGACCACCATGCCTGTCAGCCACGCCTCCAGGTATTATTCGGGATATA
TAGATGGGCGAGTTTTGCTCCTTGCCCCCCATTACATTGAAACCCAAGCC
CTCCTCCGTTTTCGGGAGCTCGACGACTCTGGGATGAGCGTGCCCCTCGC
TGGCTGCGAAGGCTGCCACAGTGGCCTTGGCAGTGGCGGATGCCCTCACG
TCGTGGGAGCCCTGGATGTCCACCGTCTCGTAGACGTGCTCGTACACCTC
CCGCACGGAGGTCATGAAGTCCGAGTTGAGCACCTTCTGCAGGGCGGCCA
GTTTTGTCGTGGGGAAGTCGCCACTCGCTTGCAGCTTTTCCAAGAGCTCT
ATCGATCTTTTGACATCTCTGGACAAAGTCAGTGGTTCTGCGTTATCGGC
CATGTCGACTGATAACT
BO12791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7662-PA | 588 | veli-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
CG7662-PB | 735 | veli-RB | 1..305 | 603..299 | 1525 | 100 | Minus |
CG7662-PB | 735 | veli-RB | 596..732 | 155..19 | 685 | 100 | Minus |
CG7662-PB | 735 | veli-RB | 457..591 | 300..166 | 675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 894 | CG7662-RA | 78..662 | 603..19 | 2925 | 100 | Minus |
veli-RC | 1047 | CG7662-RC | 78..382 | 603..299 | 1525 | 100 | Minus |
veli-RC | 1047 | CG7662-RC | 534..815 | 300..19 | 1410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25065147..25065416 | 299..568 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 25064650..25064797 | 19..166 | 740 | 100 | Plus |
3R | 32079331 | 3R | 25064861..25064995 | 166..300 | 675 | 100 | Plus |
3R | 32079331 | 3R | 25065478..25065514 | 567..603 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:59:16 has no hits.
BO12791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:03 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-PA | 1..588 | 15..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:29 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7662-PA | 1..588 | 15..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:45 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 71..666 | 14..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:32:55 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 71..666 | 14..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:32:55 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065148..25065414 | 300..566 | 100 | <- | Plus |
3R | 25065478..25065521 | 567..611 | 93 | | Plus |
3R | 25064646..25064796 | 14..165 | 98 | <- | Plus |
3R | 25064861..25064994 | 166..299 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:45 Download gff for
BO12791.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20890368..20890518 | 14..165 | 98 | <- | Plus |
arm_3R | 20890583..20890716 | 166..299 | 100 | <- | Plus |
arm_3R | 20890870..20891136 | 300..566 | 100 | <- | Plus |
arm_3R | 20891200..20891243 | 567..611 | 93 | | Plus |
BO12791.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-05-08
> BO12791.5prime
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
AGCAAGCTTTCTAGACC
BO12791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7662-PA | 588 | veli-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG7662-PB | 735 | veli-RB | 1..305 | 17..321 | 1525 | 100 | Plus |
CG7662-PB | 735 | veli-RB | 596..732 | 465..601 | 685 | 100 | Plus |
CG7662-PB | 735 | veli-RB | 457..591 | 320..454 | 675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 894 | CG7662-RA | 78..662 | 17..601 | 2925 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 78..382 | 17..321 | 1525 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 534..815 | 320..601 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25065147..25065416 | 321..52 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 25064650..25064797 | 601..454 | 740 | 100 | Minus |
3R | 32079331 | 3R | 25064861..25064995 | 454..320 | 675 | 100 | Minus |
3R | 32079331 | 3R | 25065478..25065514 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:14:50 has no hits.
BO12791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:04 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-PA | 1..588 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:30 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7662-PA | 1..588 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:51 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 71..666 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:11 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 71..666 | 9..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:11 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25064646..25064796 | 455..606 | 98 | <- | Minus |
3R | 25064861..25064994 | 321..454 | 100 | <- | Minus |
3R | 25065148..25065414 | 54..320 | 100 | <- | Minus |
3R | 25065478..25065521 | 9..53 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:51 Download gff for
BO12791.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20890368..20890518 | 455..606 | 98 | <- | Minus |
arm_3R | 20890583..20890716 | 321..454 | 100 | <- | Minus |
arm_3R | 20890870..20891136 | 54..320 | 100 | <- | Minus |
arm_3R | 20891200..20891243 | 9..53 | 93 | | Minus |
BO12791.complete Sequence
619 bp assembled on 2006-10-11
GenBank Submission: FJ632569
> BO12791.complete
GAAGTTATCAGTCGACATGGCCGATAACGCAGAACCACTGACTTTGTCCA
GAGATGTCAAAAGATCGATAGAGCTCTTGGAAAAGCTGCAAGCGAGTGGC
GACTTCCCCACGACAAAACTGGCCGCCCTGCAGAAGGTGCTCAACTCGGA
CTTCATGACCTCCGTGCGGGAGGTGTACGAGCACGTCTACGAGACGGTGG
ACATCCAGGGCTCCCACGACGTGAGGGCATCCGCCACTGCCAAGGCCACT
GTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTCATCCCAGAGTCGTCGA
GCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAATGTAATGGGGGGCAAGG
AGCAAAACTCGCCCATCTATATATCCCGAATAATACCTGGAGGCGTGGCT
GACAGGCATGGTGGTCTGAAAAGGGGAGATCAACTTTTGTCTGTGAATGG
TGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCCGTAGAGCTATTAAAGC
AAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTACACACCAAAGGTTCTC
GAGGAAATGGAAATGCGATTTGATAAGCAACGCAACACACGTCGTCGCCA
AGCAAGCTTTCTAGACCAT
BO12791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 588 | CG7662-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
veli-RC | 741 | CG7662-PC | 1..305 | 17..321 | 1525 | 100 | Plus |
veli-RC | 741 | CG7662-PC | 457..738 | 320..601 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-RA | 894 | CG7662-RA | 78..662 | 17..601 | 2925 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 78..382 | 17..321 | 1525 | 100 | Plus |
veli-RC | 1047 | CG7662-RC | 534..815 | 320..601 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25065147..25065416 | 321..52 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 25064650..25064797 | 601..454 | 740 | 100 | Minus |
3R | 32079331 | 3R | 25064861..25064995 | 454..320 | 675 | 100 | Minus |
3R | 32079331 | 3R | 25065478..25065514 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:42 has no hits.
BO12791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:30 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 1..588 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:54 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 75..670 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:35 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 78..662 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:30 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 76..671 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:20 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
veli-RA | 78..662 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:20 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25064648..25064796 | 455..603 | 98 | <- | Minus |
3R | 25064861..25064994 | 321..454 | 100 | <- | Minus |
3R | 25065148..25065414 | 54..320 | 100 | <- | Minus |
3R | 25065478..25065514 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:35 Download gff for
BO12791.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20890370..20890518 | 455..603 | 98 | <- | Minus |
arm_3R | 20890583..20890716 | 321..454 | 100 | <- | Minus |
arm_3R | 20890870..20891136 | 54..320 | 100 | <- | Minus |
arm_3R | 20891200..20891236 | 17..53 | 100 | | Minus |
BO12791.pep Sequence
Translation from 16 to 619
> BO12791.pep
MADNAEPLTLSRDVKRSIELLEKLQASGDFPTTKLAALQKVLNSDFMTSV
REVYEHVYETVDIQGSHDVRASATAKATVAAFAASEGHAHPRVVELPKTE
EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG
ENHEKAVELLKQAVGSVKLVVRYTPKVLEEMEMRFDKQRNTRRRQASFLD
H
BO12791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
veli-PA | 195 | CG7662-PA | 1..195 | 1..195 | 977 | 100 | Plus |
veli-PC | 246 | CG7662-PC | 1..246 | 1..195 | 915 | 79.3 | Plus |
dlg1-PK | 911 | CG1725-PK | 426..540 | 72..187 | 206 | 39.7 | Plus |
dlg1-PH | 911 | CG1725-PH | 426..540 | 72..187 | 206 | 39.7 | Plus |
dlg1-PT | 943 | CG1725-PT | 473..587 | 72..187 | 206 | 39.7 | Plus |