Clone Sequence Records
BO12792.3prime Sequence
867 bp (784 high quality bases) assembled on 2006-05-09
> BO12792.3prime
ATGGTCTAGAAAGCTTGCTTCGCCCTCCTCGTCCTTCATCATCTGCTCAA
TGAGTCTCTTACGTTCCTCAGCTTGGCGCAGCTTTCGCATGACCAGGTCC
TCGTAGTCGGTGGATGACGCACTGCACCCAGTGGTGGCCGATTTGGTTGT
CTGCTTGTCTGCCGCCGGCGGCGTTACCCACTCGAAGTGCAGCGGCTTGG
CGGGATCGCCTTTTTCGTAGGCCAAGACCATGTCGCAGGCTTCGCGCGTG
GCCAGCTCCACCATGGCGCGTCCGCGTCGCTTGCTGTTGACCACCAGGGC
CACCACGTCGCCGTACTTCTTCAGATACTTGAGCAGCTCTTGCTGTGTGT
AATCCTGGCCAGGTTCGGCCTTCCACTTCATCTTGATGCGATGCTGGGCG
GAATCAAACTGGACCGGCTGTTGCTGCAGTTTCTGTTGCTCCGCGTGATT
CCGCCGGAACTGCTCCTGCATGGCTCGCTGCTCCTCCTCCAGCAGACGGG
AGCCCTCGCGTCGCAACCGCTCGATCTGCTCATGCAGCACCTCCTCGTCG
CTTTTGGCCACCGTGCTGTAGGGTTGGCTCTTCGCCAGTTTGTGCAGTGC
CGCCCGTTCACGTTCCTCCAGTTCCAGCTTCAGCTTCTGCCGCTTCCCGT
CCAGTTGGCGACTCCTCAGCTCCGCCGCCTTCTTGGCCTTCAGCACTTTG
TCATAAGCTGCGCGCGCGGATTCATCCGTGAGGATCTCCAGAGCCTTGGA
CAACTCATGGAAGCGCTCGACTGCCTTCGGATTGTCCGGATTCTTGTCGG
GATGGCACTCGAGGGCCTTCTTGCGGTACGCCTTGCGTATCTCATTTTGA
TCAGACTCGAGAGAAAT
BO12792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-PA | 900 | CG17187-RA | 49..897 | 867..19 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-RA | 1263 | CG17187-RA | 220..1068 | 867..19 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11230812..11231660 | 19..867 | 4245 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1141 | 502..415 | 118 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6651..6791 | 560..417 | 110 | 54.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6899 | 495..333 | 110 | 54.2 | Minus |
BO12792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:05 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-PA | 49..900 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:31 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-PA | 49..900 | 16..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:27 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 220..1072 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:42:47 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 220..1072 | 15..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:42:47 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11230807..11231660 | 15..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:27 Download gff for
BO12792.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7056529..7057382 | 15..867 | 99 | | Plus |
BO12792.5prime Sequence
893 bp (729 high quality bases) assembled on 2006-05-08
> BO12792.5prime
GAAGTTATCAGTCGACATGGCTAGCAAAAAGTACAGTGACGTGAATCTTT
ACGATCTTCTGGGCATTTCTCTCGAGTCTGATCAAAATGAGATACGCAAG
GCGTACCGCAAGAAGGCCCTCGAGTGCCATCCCGACAAGAATCCGGACAA
TCCGAAGGCAGTCGAGCGCTTCCATGAGTTGTCCAAGGCTCTGGAGATCC
TCACGGATGAATCCGCGCGCGCAGCTTATGACAAAGTGCTGAAGGCCAAG
AAGGCGGCGGAGCTGAGGAGTCGCCAACTGGACGGGAAGCGGCAGAAGCT
GAAGCTGGAACTGGAGGAACGTGAACGGGCGGCACTGCACAAACTGGCGA
AGAGCCAACCCTACAGCACGGTGGCCAAAAGCGACGAGGAGGTGCTGCAT
GAGCAGATCGAGCGGTTGCGACGCGAGGGCTCCCGTCTGCTGGAGGAGGA
GCAGCGAGCCATGCAGGAGCAGTTCCGGCGGAATCACGCGGAGCAACAGA
AACTGCAGCAACAGCCGGTCCAGTTTGATTCCGCCCAGCATCGCATCAAG
ATGAAGTGGAAGGCCGAACCTGGCCAGGATTACACACAGCAAGAGCTGCT
CAAGTATCTGAAGAAGTACGGCGACGTGGTGGCCCTGGTGGTCAACAGCA
AGCGACGCGGACGCGCCATGGTGGAGCTGGCCACGCGCGAAGCCTGCGAC
ATGGTCTTGGCCTACGAAAAAGGCGATCCCGCCAAGCCGCTGCACTTCGA
GTGGGTAACGCCGCCGGCGGCAGACAAGCAGACAACCAAATCGGCCACCA
CTGGGTGCAGTGCGTCATCCACCGACTACGAGGACCTGGTCATGCGAAAG
CTGCGCCAAGCTGAAGAACGTAAGAGACTCATTGAGCAGATGA
BO12792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-PA | 900 | CG17187-RA | 1..877 | 17..893 | 4360 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-RA | 1263 | CG17187-RA | 172..1048 | 17..893 | 4370 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11230832..11231708 | 893..17 | 4370 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-09 09:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1141 | 430..517 | 118 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6651..6791 | 372..515 | 110 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6899 | 437..599 | 110 | 54.2 | Plus |
BO12792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:06 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:32 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:42 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 162..1047 | 7..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:29 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 162..1047 | 7..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:29 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11230833..11231718 | 7..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:42 Download gff for
BO12792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7056555..7057440 | 7..892 | 99 | | Minus |
BO12792.complete Sequence
931 bp assembled on 2006-10-11
GenBank Submission: FJ632570
> BO12792.complete
GAAGTTATCAGTCGACATGGCTAGCAAAAAGTACAGTGACGTGAATCTTT
ACGATCTTCTGGGCATTTCTCTCGAGTCTGATCAAAATGAGATACGCAAG
GCGTACCGCAAGAAGGCCCTCGAGTGCCATCCCGACAAGAATCCGGACAA
TCCGAAGGCAGTCGAGCGCTTCCATGAGTTGTCCAAGGCTCTGGAGATCC
TCACGGATGAATCCGCGCGCGCAGCTTATGACAAAGTGCTGAAGGCCAAG
AAGGCGGCGGAGCTGAGGAGTCGCCAACTGGACGGGAAGCGGCAGAAGCT
GAAGCTGGAACTGGAGGAACGTGAACGGGCGGCACTGCACAAACTGGCGA
AGAGCCAACCCTACAGCACGGTGGCCAAAAGCGACGAGGAGGTGCTGCAT
GAGCAGATCGAGCGGTTGCGACGCGAGGGCTCCCGTCTGCTGGAGGAGGA
GCAGCGAGCCATGCAGGAGCAGTTCCGGCGGAATCACGCGGAGCAACAGA
AACTGCAGCAACAGCCGGTCCAGTTTGATTCCGCCCAGCATCGCATCAAG
ATGAAGTGGAAGGCCGAACCTGGCCAGGATTACACACAGCAAGAGCTGCT
CAAGTATCTGAAGAAGTACGGCGACGTGGTGGCCCTGGTGGTCAACAGCA
AGCGACGCGGACGCGCCATGGTGGAGCTGGCCACGCGCGAAGCCTGCGAC
ATGGTCTTGGCCTACGAAAAAGGCGATCCCGCCAAGCCGCTGCACTTCGA
GTGGGTAACGCCGCCGGCGGCAGACAAGCAGACAACCAAATCGGCCACCA
CTGGGTGCAGTGCGTCATCCACCGACTACGAGGACCTGGTCATGCGAAAG
CTGCGCCAAGCTGAGGAACGTAAGAGACTCATTGAGCAGATGATGAAGGA
CGAGGAGGGCGAAGCAAGCTTTCTAGACCAT
BO12792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-RA | 900 | CG17187-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-RA | 1263 | CG17187-RA | 172..1068 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11230812..11231708 | 913..17 | 4485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1141 | 430..517 | 118 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6651..6791 | 372..515 | 110 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6899 | 437..599 | 110 | 54.2 | Plus |
BO12792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:26 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:02 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 139..1049 | 7..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:43 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 172..1068 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:26 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 139..1049 | 7..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:38 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17187-RA | 172..1068 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:38 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11230809..11231708 | 17..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:43 Download gff for
BO12792.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7056531..7057430 | 17..915 | 99 | | Minus |
BO12792.pep Sequence
Translation from 16 to 931
> BO12792.pep
MASKKYSDVNLYDLLGISLESDQNEIRKAYRKKALECHPDKNPDNPKAVE
RFHELSKALEILTDESARAAYDKVLKAKKAAELRSRQLDGKRQKLKLELE
ERERAALHKLAKSQPYSTVAKSDEEVLHEQIERLRREGSRLLEEEQRAMQ
EQFRRNHAEQQKLQQQPVQFDSAQHRIKMKWKAEPGQDYTQQELLKYLKK
YGDVVALVVNSKRRGRAMVELATREACDMVLAYEKGDPAKPLHFEWVTPP
AADKQTTKSATTGCSASSTDYEDLVMRKLRQAEERKRLIEQMMKDEEGEA
SFLDH
BO12792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17187-PA | 299 | CG17187-PA | 1..299 | 1..299 | 1519 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 2..67 | 9..73 | 171 | 51.5 | Plus |
| mrj-PC | 259 | CG8448-PC | 2..67 | 9..73 | 171 | 51.5 | Plus |
| mrj-PB | 259 | CG8448-PB | 2..67 | 9..73 | 171 | 51.5 | Plus |
| mrj-PD | 259 | CG8448-PD | 2..67 | 9..73 | 171 | 51.5 | Plus |
