Clone BO12793 Report

Search the DGRC for BO12793

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRbp1-like-RA
Protein status:BO12793.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO12793.3prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-09

> BO12793.3prime
ATGGTCTAGAAAGCTTGCATGGCGGTCCCTGGAGTCGGAGCGACTGCGAC
GATCCCTCGAAAAGCTGCGGCTGCGTGTCCTTGAGCGGCGGGGTGAGCGT
GATCTATAGCGTCCACCGCCATCGCCAGCCCTTCCACCGCCTCCAGCACG
GGCGCCACTGCCACCGCCGCGGCCGCCGCCACCGGATCCGCCTCCACCAC
CGCCGCCTCCACCGCCACCGCCGCGACCCTCTCGTGAACGGCCTGATGAC
ATTTCGACACGGATGCGGGTGCCACAGCAGCGGGTGCCGTCGAGGCCACG
GGTCGCATCCTCAGCGTCGCGACGATCCTCGAACTCGACGAAGGCGAAAC
CGGGCGGATTGCGGGCCACCCAGACGTTGCGCAAGGGTCCGTATTTGCTA
AAGGCGTTCTCGATCTCGTATTTGGAGGCCGAGGATCCCAGATTGCCCAC
GTAAACTTTGCAGGCTAAATCCCATTCACGGTAGCGTGGCATGTCGACTG
ATAACT

BO12793.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1987-PA 477 Rbp1-like-RA 1..474 492..19 2370 100 Minus
CG17136-PB 321 Rbp1-RB 96..170 397..323 150 88 Minus
CG17136-PA 408 Rbp1-RA 96..170 397..323 150 88 Minus
CG17136-PC 408 Rbp1-RC 96..170 397..323 150 88 Minus
CG17136-PD 435 Rbp1-RD 96..170 397..323 150 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 1456 CG1987-RC 190..663 492..19 2370 100 Minus
Rbp1-like-RA 917 CG1987-RA 190..663 492..19 2370 100 Minus
Rbp1-like-RB 2452 CG1987-RB 190..578 492..104 1945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13384300..13384688 104..492 1945 100 Plus
3R 32079331 3R 10784625..10784830 474..269 460 81.6 Minus
X 23542271 X 13380959..13381045 19..105 435 100 Plus
2L 23513712 2L 6919787..6919843 328..384 180 87.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:28:08 has no hits.

BO12793.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:07 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1987-PA 1..477 18..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:34 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1987-PA 1..477 18..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:10 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 186..663 19..500 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:41 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 186..663 19..500 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:41 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13380959..13381043 19..103 100 <- Plus
X 13384300..13384692 104..500 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:10 Download gff for BO12793.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13274992..13275076 19..103 100 <- Plus
arm_X 13278333..13278725 104..500 98   Plus

BO12793.5prime Sequence

506 bp (505 high quality bases) assembled on 2006-05-08

> BO12793.5prime
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATGCAAGCTTTC
TAGACC

BO12793.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1987-PA 477 Rbp1-like-RA 1..474 17..490 2370 100 Plus
CG17136-PB 321 Rbp1-RB 96..170 112..186 150 88 Plus
CG17136-PA 408 Rbp1-RA 96..170 112..186 150 88 Plus
CG17136-PC 408 Rbp1-RC 96..170 112..186 150 88 Plus
CG17136-PD 435 Rbp1-RD 96..170 112..186 150 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 1456 CG1987-RC 190..663 17..490 2370 100 Plus
Rbp1-like-RA 917 CG1987-RA 190..663 17..490 2370 100 Plus
Rbp1-like-RB 2452 CG1987-RB 190..578 17..405 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13384300..13384688 405..17 1945 100 Minus
3R 32079331 3R 10784625..10784830 35..240 460 81.6 Plus
X 23542271 X 13380959..13381045 490..404 435 100 Minus
2L 23513712 2L 6919787..6919843 181..125 180 87.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:30:00 has no hits.

BO12793.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:08 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1987-PA 1..477 17..491 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:36 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1987-PA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:55 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 186..663 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:25 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 186..663 9..490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:25 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13380959..13381043 406..490 100 <- Minus
X 13384300..13384692 9..405 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:55 Download gff for BO12793.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13274992..13275076 406..490 100 <- Minus
arm_X 13278333..13278725 9..405 98   Minus

BO12793.complete Sequence

508 bp assembled on 2006-10-11

GenBank Submission: FJ632571

> BO12793.complete
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATGCAAGCTTTC
TAGACCAT

BO12793.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 477 CG1987-PC 1..474 17..490 2370 100 Plus
Rbp1-like-RA 477 CG1987-PA 1..474 17..490 2370 100 Plus
Rbp1-like-RB 744 CG1987-PB 1..389 17..405 1945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-RC 1456 CG1987-RC 190..663 17..490 2370 100 Plus
Rbp1-like-RA 917 CG1987-RA 190..663 17..490 2370 100 Plus
Rbp1-like-RB 2452 CG1987-RB 190..578 17..405 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13384300..13384688 405..17 1945 100 Minus
3R 32079331 3R 10784625..10784830 35..240 460 81.6 Plus
X 23542271 X 13380959..13381045 490..404 435 100 Minus
2L 23513712 2L 6919787..6919843 181..125 180 87.7 Minus
Blast to na_te.dros performed on 2014-11-27 08:17:43 has no hits.

BO12793.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:27 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:17 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 182..659 9..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:27 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 190..663 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:27 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 182..659 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:08 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-like-RA 190..663 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:08 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
X 13380957..13381043 406..492 97 <- Minus
X 13384300..13384688 17..405 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:27 Download gff for BO12793.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13274990..13275076 406..492 97 <- Minus
arm_X 13278333..13278721 17..405 100   Minus

BO12793.pep Sequence

Translation from 16 to 508

> BO12793.pep
MPRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRGLDGTRCCGTRIRVEMSSGRSREGRGGGGGGGGGG
GGSGGGGRGGGSGARAGGGGRAGDGGGRYRSRSPRRSRTRSRSFSRDRRS
RSDSRDRHASFLDH

BO12793.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-like-PC 158 CG1987-PC 1..158 1..158 852 100 Plus
Rbp1-like-PA 158 CG1987-PA 1..158 1..158 852 100 Plus
Rbp1-like-PB 247 CG1987-PB 1..139 1..139 718 95 Plus
Rbp1-PA 135 CG17136-PA 1..135 1..158 591 75.5 Plus
Rbp1-PD 144 CG17136-PD 1..101 1..101 479 88.1 Plus