Clone Sequence Records
BO12793.3prime Sequence
506 bp (505 high quality bases) assembled on 2006-05-09
> BO12793.3prime
ATGGTCTAGAAAGCTTGCATGGCGGTCCCTGGAGTCGGAGCGACTGCGAC
GATCCCTCGAAAAGCTGCGGCTGCGTGTCCTTGAGCGGCGGGGTGAGCGT
GATCTATAGCGTCCACCGCCATCGCCAGCCCTTCCACCGCCTCCAGCACG
GGCGCCACTGCCACCGCCGCGGCCGCCGCCACCGGATCCGCCTCCACCAC
CGCCGCCTCCACCGCCACCGCCGCGACCCTCTCGTGAACGGCCTGATGAC
ATTTCGACACGGATGCGGGTGCCACAGCAGCGGGTGCCGTCGAGGCCACG
GGTCGCATCCTCAGCGTCGCGACGATCCTCGAACTCGACGAAGGCGAAAC
CGGGCGGATTGCGGGCCACCCAGACGTTGCGCAAGGGTCCGTATTTGCTA
AAGGCGTTCTCGATCTCGTATTTGGAGGCCGAGGATCCCAGATTGCCCAC
GTAAACTTTGCAGGCTAAATCCCATTCACGGTAGCGTGGCATGTCGACTG
ATAACT
BO12793.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1987-PA | 477 | Rbp1-like-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
CG17136-PB | 321 | Rbp1-RB | 96..170 | 397..323 | 150 | 88 | Minus |
CG17136-PA | 408 | Rbp1-RA | 96..170 | 397..323 | 150 | 88 | Minus |
CG17136-PC | 408 | Rbp1-RC | 96..170 | 397..323 | 150 | 88 | Minus |
CG17136-PD | 435 | Rbp1-RD | 96..170 | 397..323 | 150 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 1456 | CG1987-RC | 190..663 | 492..19 | 2370 | 100 | Minus |
Rbp1-like-RA | 917 | CG1987-RA | 190..663 | 492..19 | 2370 | 100 | Minus |
Rbp1-like-RB | 2452 | CG1987-RB | 190..578 | 492..104 | 1945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13384300..13384688 | 104..492 | 1945 | 100 | Plus |
3R | 32079331 | 3R | 10784625..10784830 | 474..269 | 460 | 81.6 | Minus |
X | 23542271 | X | 13380959..13381045 | 19..105 | 435 | 100 | Plus |
2L | 23513712 | 2L | 6919787..6919843 | 328..384 | 180 | 87.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:28:08 has no hits.
BO12793.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:07 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1987-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:34 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1987-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:16:10 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 186..663 | 19..500 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:41 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 186..663 | 19..500 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:41 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13380959..13381043 | 19..103 | 100 | <- | Plus |
X | 13384300..13384692 | 104..500 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:16:10 Download gff for
BO12793.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13274992..13275076 | 19..103 | 100 | <- | Plus |
arm_X | 13278333..13278725 | 104..500 | 98 | | Plus |
BO12793.5prime Sequence
506 bp (505 high quality bases) assembled on 2006-05-08
> BO12793.5prime
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATGCAAGCTTTC
TAGACC
BO12793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1987-PA | 477 | Rbp1-like-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG17136-PB | 321 | Rbp1-RB | 96..170 | 112..186 | 150 | 88 | Plus |
CG17136-PA | 408 | Rbp1-RA | 96..170 | 112..186 | 150 | 88 | Plus |
CG17136-PC | 408 | Rbp1-RC | 96..170 | 112..186 | 150 | 88 | Plus |
CG17136-PD | 435 | Rbp1-RD | 96..170 | 112..186 | 150 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 1456 | CG1987-RC | 190..663 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RA | 917 | CG1987-RA | 190..663 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RB | 2452 | CG1987-RB | 190..578 | 17..405 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13384300..13384688 | 405..17 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 10784625..10784830 | 35..240 | 460 | 81.6 | Plus |
X | 23542271 | X | 13380959..13381045 | 490..404 | 435 | 100 | Minus |
2L | 23513712 | 2L | 6919787..6919843 | 181..125 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:30:00 has no hits.
BO12793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:08 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1987-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:36 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1987-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:55 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 186..663 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:25 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 186..663 | 9..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:25 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13380959..13381043 | 406..490 | 100 | <- | Minus |
X | 13384300..13384692 | 9..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:55 Download gff for
BO12793.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13274992..13275076 | 406..490 | 100 | <- | Minus |
arm_X | 13278333..13278725 | 9..405 | 98 | | Minus |
BO12793.complete Sequence
508 bp assembled on 2006-10-11
GenBank Submission: FJ632571
> BO12793.complete
GAAGTTATCAGTCGACATGCCACGCTACCGTGAATGGGATTTAGCCTGCA
AAGTTTACGTGGGCAATCTGGGATCCTCGGCCTCCAAATACGAGATCGAG
AACGCCTTTAGCAAATACGGACCCTTGCGCAACGTCTGGGTGGCCCGCAA
TCCGCCCGGTTTCGCCTTCGTCGAGTTCGAGGATCGTCGCGACGCTGAGG
ATGCGACCCGTGGCCTCGACGGCACCCGCTGCTGTGGCACCCGCATCCGT
GTCGAAATGTCATCAGGCCGTTCACGAGAGGGTCGCGGCGGTGGCGGTGG
AGGCGGCGGTGGTGGAGGCGGATCCGGTGGCGGCGGCCGCGGCGGTGGCA
GTGGCGCCCGTGCTGGAGGCGGTGGAAGGGCTGGCGATGGCGGTGGACGC
TATAGATCACGCTCACCCCGCCGCTCAAGGACACGCAGCCGCAGCTTTTC
GAGGGATCGTCGCAGTCGCTCCGACTCCAGGGACCGCCATGCAAGCTTTC
TAGACCAT
BO12793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 477 | CG1987-PC | 1..474 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RA | 477 | CG1987-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RB | 744 | CG1987-PB | 1..389 | 17..405 | 1945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-RC | 1456 | CG1987-RC | 190..663 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RA | 917 | CG1987-RA | 190..663 | 17..490 | 2370 | 100 | Plus |
Rbp1-like-RB | 2452 | CG1987-RB | 190..578 | 17..405 | 1945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13384300..13384688 | 405..17 | 1945 | 100 | Minus |
3R | 32079331 | 3R | 10784625..10784830 | 35..240 | 460 | 81.6 | Plus |
X | 23542271 | X | 13380959..13381045 | 490..404 | 435 | 100 | Minus |
2L | 23513712 | 2L | 6919787..6919843 | 181..125 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:17:43 has no hits.
BO12793.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:27 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:17 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 182..659 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:27 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 190..663 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:27 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 182..659 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:08 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp1-like-RA | 190..663 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:08 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13380957..13381043 | 406..492 | 97 | <- | Minus |
X | 13384300..13384688 | 17..405 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:27 Download gff for
BO12793.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13274990..13275076 | 406..492 | 97 | <- | Minus |
arm_X | 13278333..13278721 | 17..405 | 100 | | Minus |
BO12793.pep Sequence
Translation from 16 to 508
> BO12793.pep
MPRYREWDLACKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFA
FVEFEDRRDAEDATRGLDGTRCCGTRIRVEMSSGRSREGRGGGGGGGGGG
GGSGGGGRGGGSGARAGGGGRAGDGGGRYRSRSPRRSRTRSRSFSRDRRS
RSDSRDRHASFLDH
BO12793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp1-like-PC | 158 | CG1987-PC | 1..158 | 1..158 | 852 | 100 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 1..158 | 1..158 | 852 | 100 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 1..139 | 1..139 | 718 | 95 | Plus |
Rbp1-PA | 135 | CG17136-PA | 1..135 | 1..158 | 591 | 75.5 | Plus |
Rbp1-PD | 144 | CG17136-PD | 1..101 | 1..101 | 479 | 88.1 | Plus |