Clone Sequence Records
BO12794.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-08
> BO12794.3prime
ATGGTCTAGAAAGCTTGCGGCGGTGGTATAATACCAATTTGCAGTGGTAT
CCTGCGGAACTGGAGCTCCAGCAAGGCATTTGTTGAGTTCTCCATAGTAG
AGCGAGGTGCCCTCCACGAAATCCTTTTCGGAATAGTTCAAGCAGCTTTC
CAACTGGCTGTCCAAAGTCTGCAAATGGATCTTGATCTGGACGGCGGCTT
CGGTGGCATTCGCCGAGACTTGGTACATGATTTTTGATTGCTCAGCTCCG
ACGTTGGCGAAGCACTCGAAGGCGAGCACGAAGTCCACAATGGAGGAGCA
GTCGAAGAAGGTGTTGCAGCCACGATCCCCGGAAGCCTGGATGCCGAAGA
GAGTGCTGTTCCAGGCGGCGAGGACCAGTTCGCTGGCGGTGTCGTAGTCC
TTAACGCACTTATTGTAGTCCAGTTCGTACTGGGCCGACAGCCCGTTGAT
GATGGGTATGTAGTAGTCGAAGCAGCGTACCGAAGTGCCAGGATCCCGAG
CAGCCAGCTCTTCCGTTTGCTGCTGAAGGCCAAGGATCTTCTTGTTGGTG
GGCAGCTTCAGCTTGGAAGGCTTTACCACGAGGCTAAGGCTGAGGCCAGA
AACCAGGCCAAAAGCGAGAACCACGGCGAGCAGGGAGAATTTGGAAAACA
TGTCGACTGATAACT
BO12794.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-PA | 636 | CG7567-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-RA | 770 | CG7567-RA | 38..671 | 652..19 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29587664..29588067 | 249..652 | 2020 | 100 | Plus |
3R | 32079331 | 3R | 29587336..29587566 | 19..249 | 1155 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 20:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6757..6794 | 621..656 | 113 | 81.6 | Plus |
BO12794.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:09 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:37 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:50 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 38..674 | 15..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:42 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 38..674 | 15..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:42 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29587332..29587566 | 15..249 | 99 | <- | Plus |
3R | 29587665..29588067 | 250..652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:50 Download gff for
BO12794.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25413054..25413288 | 15..249 | 99 | <- | Plus |
arm_3R | 25413387..25413789 | 250..652 | 100 | | Plus |
BO12794.5prime Sequence
665 bp (664 high quality bases) assembled on 2006-05-08
> BO12794.5prime
GAAGTTATCAGTCGACATGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTC
TCGCTTTTGGCCTGGTTTCTGGCCTCAGCCTTAGCCTCGTGGTAAAGCCT
TCCAAGCTGAAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCA
AACGGAAGAGCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCG
ACTACTACATACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGAC
TACAATAAGTGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGC
CGCCTGGAACAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCT
GCAACACCTTCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTC
GAGTGCTTCGCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGT
CTCGGCGAATGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGA
CTTTGGACAGCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTC
GTGGAGGGCACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGG
AGCTCCAGTTCCGCAGGATACCACTGCAAATTGGTATTATACCACCGCCG
CAAGCTTTCTAGACC
BO12794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-PA | 636 | CG7567-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-RA | 770 | CG7567-RA | 38..671 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29587664..29588067 | 419..16 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 29587336..29587566 | 649..419 | 1155 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 00:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6757..6794 | 47..12 | 113 | 81.6 | Minus |
BO12794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:10 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:38 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:11 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 38..674 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:13 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 38..674 | 16..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:13 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29587332..29587566 | 419..653 | 99 | <- | Minus |
3R | 29587665..29588067 | 16..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:11 Download gff for
BO12794.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25413054..25413288 | 419..653 | 99 | <- | Minus |
arm_3R | 25413387..25413789 | 16..418 | 100 | | Minus |
BO12794.complete Sequence
667 bp assembled on 2006-10-11
GenBank Submission: FJ632572
> BO12794.complete
GAAGTTATCAGTCGACATGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTC
TCGCTTTTGGCCTGGTTTCTGGCCTCAGCCTTAGCCTCGTGGTAAAGCCT
TCCAAGCTGAAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCA
AACGGAAGAGCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCG
ACTACTACATACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGAC
TACAATAAGTGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGC
CGCCTGGAACAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCT
GCAACACCTTCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTC
GAGTGCTTCGCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGT
CTCGGCGAATGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGA
CTTTGGACAGCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTC
GTGGAGGGCACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGG
AGCTCCAGTTCCGCAGGATACCACTGCAAATTGGTATTATACCACCGCCG
CAAGCTTTCTAGACCAT
BO12794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-RA | 636 | CG7567-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-RA | 770 | CG7567-RA | 38..671 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29587664..29588067 | 419..16 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 29587336..29587566 | 649..419 | 1155 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6757..6794 | 47..12 | 113 | 81.6 | Minus |
BO12794.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:06 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:32 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 34..670 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:34 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 46..671 | 24..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:06 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 34..670 | 16..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:43 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7567-RA | 46..671 | 24..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:43 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29587334..29587566 | 419..651 | 99 | <- | Minus |
3R | 29587665..29588059 | 24..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:34 Download gff for
BO12794.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25413056..25413288 | 419..651 | 99 | <- | Minus |
arm_3R | 25413387..25413781 | 24..418 | 100 | | Minus |
BO12794.pep Sequence
Translation from 16 to 667
> BO12794.pep
MFSKFSLLAVVLAFGLVSGLSLSLVVKPSKLKLPTNKKILGLQQQTEELA
ARDPGTSVRCFDYYIPIINGLSAQYELDYNKCVKDYDTASELVLAAWNST
LFGIQASGDRGCNTFFDCSSIVDFVLAFECFANVGAEQSKIMYQVSANAT
EAAVQIKIHLQTLDSQLESCLNYSEKDFVEGTSLYYGELNKCLAGAPVPQ
DTTANWYYTTAASFLDH
BO12794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7567-PA | 211 | CG7567-PA | 1..211 | 1..211 | 1088 | 100 | Plus |
CG10911-PA | 359 | CG10911-PA | 1..205 | 7..213 | 250 | 28.1 | Plus |
CG10912-PA | 271 | CG10912-PA | 5..206 | 7..213 | 231 | 27.4 | Plus |
CG11470-PB | 230 | CG11470-PB | 2..215 | 5..213 | 227 | 30.1 | Plus |
CG11470-PA | 230 | CG11470-PA | 2..215 | 5..213 | 227 | 30.1 | Plus |