Clone BO12794 Report

Search the DGRC for BO12794

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG7567-RA
Protein status:BO12794.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO12794.3prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-08

> BO12794.3prime
ATGGTCTAGAAAGCTTGCGGCGGTGGTATAATACCAATTTGCAGTGGTAT
CCTGCGGAACTGGAGCTCCAGCAAGGCATTTGTTGAGTTCTCCATAGTAG
AGCGAGGTGCCCTCCACGAAATCCTTTTCGGAATAGTTCAAGCAGCTTTC
CAACTGGCTGTCCAAAGTCTGCAAATGGATCTTGATCTGGACGGCGGCTT
CGGTGGCATTCGCCGAGACTTGGTACATGATTTTTGATTGCTCAGCTCCG
ACGTTGGCGAAGCACTCGAAGGCGAGCACGAAGTCCACAATGGAGGAGCA
GTCGAAGAAGGTGTTGCAGCCACGATCCCCGGAAGCCTGGATGCCGAAGA
GAGTGCTGTTCCAGGCGGCGAGGACCAGTTCGCTGGCGGTGTCGTAGTCC
TTAACGCACTTATTGTAGTCCAGTTCGTACTGGGCCGACAGCCCGTTGAT
GATGGGTATGTAGTAGTCGAAGCAGCGTACCGAAGTGCCAGGATCCCGAG
CAGCCAGCTCTTCCGTTTGCTGCTGAAGGCCAAGGATCTTCTTGTTGGTG
GGCAGCTTCAGCTTGGAAGGCTTTACCACGAGGCTAAGGCTGAGGCCAGA
AACCAGGCCAAAAGCGAGAACCACGGCGAGCAGGGAGAATTTGGAAAACA
TGTCGACTGATAACT

BO12794.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-PA 636 CG7567-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-RA 770 CG7567-RA 38..671 652..19 3170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29587664..29588067 249..652 2020 100 Plus
3R 32079331 3R 29587336..29587566 19..249 1155 100 Plus
Blast to na_te.dros performed 2015-02-02 20:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6757..6794 621..656 113 81.6 Plus

BO12794.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:09 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:37 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:50 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 38..674 15..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:15:42 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 38..674 15..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:15:42 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29587332..29587566 15..249 99 <- Plus
3R 29587665..29588067 250..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:50 Download gff for BO12794.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25413054..25413288 15..249 99 <- Plus
arm_3R 25413387..25413789 250..652 100   Plus

BO12794.5prime Sequence

665 bp (664 high quality bases) assembled on 2006-05-08

> BO12794.5prime
GAAGTTATCAGTCGACATGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTC
TCGCTTTTGGCCTGGTTTCTGGCCTCAGCCTTAGCCTCGTGGTAAAGCCT
TCCAAGCTGAAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCA
AACGGAAGAGCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCG
ACTACTACATACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGAC
TACAATAAGTGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGC
CGCCTGGAACAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCT
GCAACACCTTCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTC
GAGTGCTTCGCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGT
CTCGGCGAATGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGA
CTTTGGACAGCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTC
GTGGAGGGCACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGG
AGCTCCAGTTCCGCAGGATACCACTGCAAATTGGTATTATACCACCGCCG
CAAGCTTTCTAGACC

BO12794.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-PA 636 CG7567-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-RA 770 CG7567-RA 38..671 16..649 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29587664..29588067 419..16 2020 100 Minus
3R 32079331 3R 29587336..29587566 649..419 1155 100 Minus
Blast to na_te.dros performed 2015-02-10 00:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6757..6794 47..12 113 81.6 Minus

BO12794.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:10 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:38 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:11 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 38..674 16..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:03:13 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 38..674 16..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:03:13 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29587332..29587566 419..653 99 <- Minus
3R 29587665..29588067 16..418 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:11 Download gff for BO12794.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25413054..25413288 419..653 99 <- Minus
arm_3R 25413387..25413789 16..418 100   Minus

BO12794.complete Sequence

667 bp assembled on 2006-10-11

GenBank Submission: FJ632572

> BO12794.complete
GAAGTTATCAGTCGACATGTTTTCCAAATTCTCCCTGCTCGCCGTGGTTC
TCGCTTTTGGCCTGGTTTCTGGCCTCAGCCTTAGCCTCGTGGTAAAGCCT
TCCAAGCTGAAGCTGCCCACCAACAAGAAGATCCTTGGCCTTCAGCAGCA
AACGGAAGAGCTGGCTGCTCGGGATCCTGGCACTTCGGTACGCTGCTTCG
ACTACTACATACCCATCATCAACGGGCTGTCGGCCCAGTACGAACTGGAC
TACAATAAGTGCGTTAAGGACTACGACACCGCCAGCGAACTGGTCCTCGC
CGCCTGGAACAGCACTCTCTTCGGCATCCAGGCTTCCGGGGATCGTGGCT
GCAACACCTTCTTCGACTGCTCCTCCATTGTGGACTTCGTGCTCGCCTTC
GAGTGCTTCGCCAACGTCGGAGCTGAGCAATCAAAAATCATGTACCAAGT
CTCGGCGAATGCCACCGAAGCCGCCGTCCAGATCAAGATCCATTTGCAGA
CTTTGGACAGCCAGTTGGAAAGCTGCTTGAACTATTCCGAAAAGGATTTC
GTGGAGGGCACCTCGCTCTACTATGGAGAACTCAACAAATGCCTTGCTGG
AGCTCCAGTTCCGCAGGATACCACTGCAAATTGGTATTATACCACCGCCG
CAAGCTTTCTAGACCAT

BO12794.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-RA 636 CG7567-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-RA 770 CG7567-RA 38..671 16..649 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29587664..29588067 419..16 2020 100 Minus
3R 32079331 3R 29587336..29587566 649..419 1155 100 Minus
Blast to na_te.dros performed 2014-11-26 15:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 6757..6794 47..12 113 81.6 Minus

BO12794.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:06 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:32 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 34..670 16..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:34 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 46..671 24..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:06 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 34..670 16..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:43 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
CG7567-RA 46..671 24..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:43 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29587334..29587566 419..651 99 <- Minus
3R 29587665..29588059 24..418 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:34 Download gff for BO12794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25413056..25413288 419..651 99 <- Minus
arm_3R 25413387..25413781 24..418 100   Minus

BO12794.pep Sequence

Translation from 16 to 667

> BO12794.pep
MFSKFSLLAVVLAFGLVSGLSLSLVVKPSKLKLPTNKKILGLQQQTEELA
ARDPGTSVRCFDYYIPIINGLSAQYELDYNKCVKDYDTASELVLAAWNST
LFGIQASGDRGCNTFFDCSSIVDFVLAFECFANVGAEQSKIMYQVSANAT
EAAVQIKIHLQTLDSQLESCLNYSEKDFVEGTSLYYGELNKCLAGAPVPQ
DTTANWYYTTAASFLDH

BO12794.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7567-PA 211 CG7567-PA 1..211 1..211 1088 100 Plus
CG10911-PA 359 CG10911-PA 1..205 7..213 250 28.1 Plus
CG10912-PA 271 CG10912-PA 5..206 7..213 231 27.4 Plus
CG11470-PB 230 CG11470-PB 2..215 5..213 227 30.1 Plus
CG11470-PA 230 CG11470-PA 2..215 5..213 227 30.1 Plus