Clone Sequence Records
BO12795.3prime Sequence
791 bp (790 high quality bases) assembled on 2006-05-08
> BO12795.3prime
ATGGTCTAGAAAGCTTGCAATCATGGCCATATTGTAGCTGCTGACTTGGA
GAAGCGTATAGGTAAGCACCTCTACGAACATCTCCAGGCGAGCGGCAAGA
CTCCCGGTGGCGAGTATCTCATTGGGATTGGGCAGCTGGAGGCTGTTGGA
GCGCAGGTAGTTGAGCTGTTCCATATTGGCGGCTATGGTCAGAAGCTTCT
CCTGCTGCTCGGATGTAAAAGCATCTGGCGGAGACTCACCGCCGGTTGGC
ATGAGCTTTTCCAGCTGCTGCGCAAATCCATGGAGCTGCGTCAGCTTCTG
CTTGTATATGGATTCTGTGGTGTCCAGAGCGGCTGCCTCGTCGTAGATCT
TGGCCAGCTTTCGCTGGAAACCCTTAAAATCATTGTACACGTCCACGGCA
CTGCGCTGCTCCTCCAGACGCGTCAGACTCAGCGAAACGTTGGATGTGTT
GATGCCCATGGCCACCGACTCGTCTGCTCCTCGCAGGAGCGTTGAGTTGG
TACGTTGTAGCTCCCGCTTCTTGGGCATTTTCTGCAGGTTGGCCGGGTAC
TCTTCCAAGGTCTTGAAGAGCTCCGCATAGTCGGCTACCGAGCTAAGATC
CCTCGGGGGCGTAGTGGCTGCTGCCTCCTCCTCCATCATCTGCTGCAGGC
TGTCAAAGAAGGCCCCCGGTTTCATCACCGTCTTGGATACGCACACGTCC
TTTAGGTTTCTCACATGTTGCGCGTACTTTCTGTACAACTTGGATGAAAT
GCTGCTGAAATCTACATTAGTTTCCATGTCGACTGATAACT
BO12795.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2213-PA | 762 | CG2213-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msd5-RA | 840 | CG2213-RA | 34..792 | 777..19 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1332355..1333113 | 19..777 | 3795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:44:50 has no hits.
BO12795.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:11 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-PA | 1..762 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:39 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-PA | 1..762 | 16..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:50:29 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 26..796 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:26 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 26..796 | 15..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:26 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1332350..1333121 | 15..785 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:50:29 Download gff for
BO12795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1332350..1333121 | 15..785 | 99 | | Plus |
BO12795.5prime Sequence
791 bp (756 high quality bases) assembled on 2006-05-08
> BO12795.5prime
GAAGTTATCAGTCGACATGGAAACTAATGTAGATTTCAGCAGCATTTCAT
CCAAGTTGTACAGAAAGTACGCGCAACATGTGAGAAACCTAAAGGACGTG
TGCGTATCCAAGACGGTGATGAAACCGGGGGCCTTCTTTGACAGCCTGCA
GCAGATGATGGAGGAGGAGGCAGCAGCCACTACGCCCCCGAGGGATCTTA
GCTCGGTAGCCGACTATGCGGAGCTCTTCAAGACCTTGGAAGAGTACCCG
GCCAACCTGCAGAAAATGCCCAAGAAGCGGGAGCTACAACGTACCAACTC
AACGCTCCTGCGAGGAGCAGACGAGTCGGTGGCCATGGGCATCAACACAT
CCAACGTTTCGCTGAGTCTGACGCGTCTGGAGGAGCAGCGCAGTGCCGTG
GACGTGTACAATGATTTTAAGGGTTTCCAGCGAAAGCTGGCCAAGATCTA
CGACGAGGCAGCCGCTCTGGACACCACAGAATCCATATACAAGCAGAAGC
TGACGCAGCTCCATGGATTTGCGCAGCAGCTGGAAAAGCTCATGCCAACC
GGCGGTGAGTCTCCGCCAGATGCTTTTACATCCGAGCAGCAGGAGAAGCT
TCTGACCATAGCCGCCAATATGGAACAGCTCAACTACCTGCGCTCCAACA
GCCTCCAGCTGCCCAATCCCAATGAGATACTCGCCACCGGGAGTCTTGCC
GCTCGCCTGGAGATGTTCGTAGAGGTGCTTACCTATACGCTTCTCCAAGT
CAGCAGCTACAATATGGCCATGATTGCAAGCTTTCTAGACC
BO12795.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2213-PA | 762 | CG2213-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msd5-RA | 840 | CG2213-RA | 34..792 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1332355..1333113 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:58 has no hits.
BO12795.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:12 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:40 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:29 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 26..796 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:03 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 26..796 | 9..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:03 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1332350..1333121 | 9..779 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:29 Download gff for
BO12795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1332350..1333121 | 9..779 | 99 | | Minus |
BO12795.complete Sequence
793 bp assembled on 2006-10-11
GenBank Submission: FJ632573
> BO12795.complete
GAAGTTATCAGTCGACATGGAAACTAATGTAGATTTCAGCAGCATTTCAT
CCAAGTTGTACAGAAAGTACGCGCAACATGTGAGAAACCTAAAGGACGTG
TGCGTATCCAAGACGGTGATGAAACCGGGGGCCTTCTTTGACAGCCTGCA
GCAGATGATGGAGGAGGAGGCAGCAGCCACTACGCCCCCGAGGGATCTTA
GCTCGGTAGCCGACTATGCGGAGCTCTTCAAGACCTTGGAAGAGTACCCG
GCCAACCTGCAGAAAATGCCCAAGAAGCGGGAGCTACAACGTACCAACTC
AACGCTCCTGCGAGGAGCAGACGAGTCGGTGGCCATGGGCATCAACACAT
CCAACGTTTCGCTGAGTCTGACGCGTCTGGAGGAGCAGCGCAGTGCCGTG
GACGTGTACAATGATTTTAAGGGTTTCCAGCGAAAGCTGGCCAAGATCTA
CGACGAGGCAGCCGCTCTGGACACCACAGAATCCATATACAAGCAGAAGC
TGACGCAGCTCCATGGATTTGCGCAGCAGCTGGAAAAGCTCATGCCAACC
GGCGGTGAGTCTCCGCCAGATGCTTTTACATCCGAGCAGCAGGAGAAGCT
TCTGACCATAGCCGCCAATATGGAACAGCTCAACTACCTGCGCTCCAACA
GCCTCCAGCTGCCCAATCCCAATGAGATACTCGCCACCGGGAGTCTTGCC
GCTCGCCTGGAGATGTTCGTAGAGGTGCTTACCTATACGCTTCTCCAAGT
CAGCAGCTACAATATGGCCATGATTGCAAGCTTTCTAGACCAT
BO12795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msd5-RA | 762 | CG2213-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msd5-RA | 840 | CG2213-RA | 34..792 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1332355..1333113 | 775..17 | 3795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:34 has no hits.
BO12795.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:10 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-RA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:40 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-RA | 32..802 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:20 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 34..792 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:10 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2213-RA | 32..802 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:13 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msd5-RA | 34..792 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:13 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1332352..1333113 | 17..777 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:20 Download gff for
BO12795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1332352..1333113 | 17..777 | 99 | | Minus |
BO12795.pep Sequence
Translation from 16 to 793
> BO12795.pep
METNVDFSSISSKLYRKYAQHVRNLKDVCVSKTVMKPGAFFDSLQQMMEE
EAAATTPPRDLSSVADYAELFKTLEEYPANLQKMPKKRELQRTNSTLLRG
ADESVAMGINTSNVSLSLTRLEEQRSAVDVYNDFKGFQRKLAKIYDEAAA
LDTTESIYKQKLTQLHGFAQQLEKLMPTGGESPPDAFTSEQQEKLLTIAA
NMEQLNYLRSNSLQLPNPNEILATGSLAARLEMFVEVLTYTLLQVSSYNM
AMIASFLDH
BO12795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msd5-PA | 253 | CG2213-PA | 1..253 | 1..253 | 1260 | 100 | Plus |
