Clone Sequence Records
BO12801.3prime Sequence
856 bp (777 high quality bases) assembled on 2006-05-08
> BO12801.3prime
ATGGTCTAGAAAGCTTGCCGCTATCAGGCGACCCGTATTACGATTTCGAC
GACTTCCGGCTCCGCCATAATTACTACCATAATGATCGCCATTTATTTGG
GTCAGTGTAGTCGTTGTATGCGGCACATAGAGACTCGTATTGTTACGCGC
ATGTCGACGTCTATAGCGATATCCCGTTATCAGTTCTCGAACCGTCTTTC
GGTACTTATCGGAAAGTACACAGTATAGAAAAAAATTGGATGCCGCATGT
AGGGAGGCCAATAGGTTACACACATTTCCCGCCACCACCTGAGTGCCAAT
TTGAATTTCCATATACTGATTGACTATCAAATAGATCGCCCAAGGCAATT
GGCAAACTATGAACATTAACACCACCGCAATAAGTGTGATCGTCACGCGA
TTTTCCTGCGATACGCTGCCTTTTAGTCCAGAATTTGATTTGCGTTTTGT
GCGCCTTATGCTGCTGGCATTGGTCAGGTCACCACGCAGATTCTTGGACC
GATGAACCAATAGAATGAGAATGGAGTTGAAGGTGGCCAATAGAAGTAGG
GGGAATACCACGAAGACCAGCAGGGTGAACAGGTTCCACAGATAGCTGTA
TAGCTCATCATAGCCCAGTTCCGAAAGACCATGATTGTAATAGGTCACAT
TTTGACAGTATTCCGTTACGTTAAATGCGAATGCATCCGTATTGTTGATG
TTGTGATTCTCAGCGCTGCGCTTGCGACGCCACAATTGCAGCAAACTCTC
TGTGACCCCTGACCTCTGGGCCGCGTCTGCCACCTTCTGATCCTGCTCCT
CCAGCGTTTTTCTCAGTGTGGGCAGCGTCCCAAATCCCGATGACTGCCAG
TGACGG
BO12801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6986-PA | 1638 | CG6986-RA | 798..1635 | 856..19 | 4140 | 99.7 | Minus |
CG6986-PB | 1638 | CG6986-RB | 798..1635 | 856..19 | 4140 | 99.7 | Minus |
CG6986-PC | 1638 | CG6986-RC | 798..1635 | 856..19 | 4140 | 99.7 | Minus |
CG6986-PD | 1638 | CG6986-RD | 798..1635 | 856..19 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 1251..2088 | 856..19 | 4160 | 99.8 | Minus |
Proc-R-RD | 3005 | CG6986-RD | 1472..2309 | 856..19 | 4160 | 99.8 | Minus |
Proc-R-RC | 2672 | CG6986-RC | 1139..1976 | 856..19 | 4160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4727623..4728048 | 444..19 | 2130 | 100 | Minus |
X | 23542271 | X | 4726894..4727105 | 856..645 | 1030 | 99.1 | Minus |
X | 23542271 | X | 4727359..4727562 | 648..445 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:14:36 has no hits.
BO12801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:13 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PA | 798..1638 | 16..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:41 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PD | 798..1638 | 16..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:09 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 1428..2269 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 1139..1980 | 15..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4726894..4727101 | 649..856 | 99 | -> | Minus |
X | 4727359..4727562 | 445..648 | 100 | -> | Minus |
X | 4727623..4728052 | 15..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:09 Download gff for
BO12801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4620927..4621134 | 649..856 | 99 | -> | Minus |
arm_X | 4621392..4621595 | 445..648 | 100 | -> | Minus |
arm_X | 4621656..4622085 | 15..444 | 99 | | Minus |
BO12801.5prime Sequence
889 bp (772 high quality bases) assembled on 2006-05-08
> BO12801.5prime
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAAGTG
BO12801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6986-PA | 1638 | CG6986-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG6986-PB | 1638 | CG6986-RB | 1..869 | 17..885 | 4345 | 100 | Plus |
CG6986-PC | 1638 | CG6986-RC | 1..869 | 17..885 | 4345 | 100 | Plus |
CG6986-PD | 1638 | CG6986-RD | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 453..1326 | 16..889 | 4355 | 99.9 | Plus |
Proc-R-RD | 3005 | CG6986-RD | 674..1547 | 16..889 | 4355 | 99.9 | Plus |
Proc-R-RC | 2672 | CG6986-RC | 341..1214 | 16..889 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4726424..4726714 | 504..794 | 1455 | 100 | Plus |
X | 23542271 | X | 4723367..4723567 | 16..216 | 1005 | 100 | Plus |
X | 23542271 | X | 4725021..4725196 | 216..391 | 880 | 100 | Plus |
X | 23542271 | X | 4726235..4726352 | 389..506 | 590 | 100 | Plus |
X | 23542271 | X | 4726873..4726969 | 793..889 | 470 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:30:58 has no hits.
BO12801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:14 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:43 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-PD | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:59 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 626..1503 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:36 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 337..1214 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:36 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4723363..4723567 | 9..216 | 98 | -> | Plus |
X | 4725022..4725194 | 217..389 | 100 | -> | Plus |
X | 4726236..4726352 | 390..506 | 100 | -> | Plus |
X | 4726427..4726714 | 507..794 | 100 | -> | Plus |
X | 4726875..4726969 | 795..889 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:59 Download gff for
BO12801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4617396..4617600 | 9..216 | 98 | -> | Plus |
arm_X | 4619055..4619227 | 217..389 | 100 | -> | Plus |
arm_X | 4620269..4620385 | 390..506 | 100 | -> | Plus |
arm_X | 4620460..4620747 | 507..794 | 100 | -> | Plus |
arm_X | 4620908..4621002 | 795..889 | 98 | | Plus |
BO12801.complete Sequence
1669 bp assembled on 2007-10-25
GenBank Submission: FJ632574
> BO12801.complete
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAGGTGGCAGACGCGGC
CCAGAGGTCAGGGGTCACAGAGAGTTTGCTGCAATTGTGGCGTCGCAAGC
GCAGCGCTGAGAATCACAACATCAACAATACGGATGCATTCGCATTTAAC
GTAACGGAATACTGTCAAAATGTGACCTATTACAATCATGGTCTTTCGGA
ACTGGGCTATGATGAGCTATACAGCTATCTGTGGAACCTGTTCACCCTGC
TGGTCTTCGTGGTATTCCCCCTACTTCTATTGGCCACCTTCAACTCCATT
CTCATTCTATTGGTTCATCGGTCCAAGAATCTGCGTGGTGACCTGACCAA
TGCCAGCAGCATAAGGCGCACAAAACGCAAATCAAATTCTGGACTAAAAG
GCAGCGTATCGCAGGAAAATCGCGTGACGATCACACTTATTGCGGTGGTG
TTAATGTTCATAGTTTGCCAATTGCCTTGGGCGATCTATTTGATAGTCAA
TCAGTATATGGAAATTCAAATTGGCACTCAGGTGGTGGCGGGAAATGTGT
GTAACCTATTGGCCTCCCTACATGCGGCATCCAATTTTTTTCTATACTGT
GTACTTTCCGATAAGTACCGAAAGACGGTTCGAGAACTGATAACGGGATA
TCGCTATAGACGTCGACATGCGCGTAACAATACGAGTCTCTATGTGCCGC
ATACAACGACTACACTGACCCAAATAAATGGCGATCATTATGGTAGTAAT
TATGGCGGAGCCGGAAGTCGTCGAAATCGTAATACGGGTCGCCTGATAGC
GGCAAGCTTTCTAGACCAT
BO12801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 1638 | CG6986-PE | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Proc-R-RD | 1638 | CG6986-PD | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Proc-R-RC | 1638 | CG6986-PC | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-RE | 2784 | CG6986-RE | 453..2088 | 16..1651 | 8180 | 100 | Plus |
Proc-R-RD | 3005 | CG6986-RD | 674..2309 | 16..1651 | 8180 | 100 | Plus |
Proc-R-RC | 2672 | CG6986-RC | 341..1976 | 16..1651 | 8180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4727623..4728048 | 1226..1651 | 2130 | 100 | Plus |
X | 23542271 | X | 4726424..4726714 | 504..794 | 1455 | 100 | Plus |
X | 23542271 | X | 4726873..4727105 | 793..1025 | 1165 | 100 | Plus |
X | 23542271 | X | 4727359..4727562 | 1022..1225 | 1020 | 100 | Plus |
X | 23542271 | X | 4723367..4723567 | 16..216 | 1005 | 100 | Plus |
X | 23542271 | X | 4725021..4725196 | 216..391 | 880 | 100 | Plus |
X | 23542271 | X | 4726235..4726352 | 389..506 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:48:17 has no hits.
BO12801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:52 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-RC | 1..1638 | 17..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:25 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-RC | 335..1978 | 9..1655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:18 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RB | 631..2265 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:54 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6986-RC | 340..1974 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:21 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-R-RC | 342..1976 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:21 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4727359..4727562 | 1022..1225 | 100 | -> | Plus |
X | 4723368..4723567 | 17..216 | 100 | -> | Plus |
X | 4725022..4725194 | 217..389 | 100 | -> | Plus |
X | 4726236..4726352 | 390..506 | 100 | -> | Plus |
X | 4726427..4726714 | 507..794 | 100 | -> | Plus |
X | 4726875..4727101 | 795..1021 | 100 | -> | Plus |
X | 4727623..4728048 | 1226..1653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:18 Download gff for
BO12801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4619055..4619227 | 217..389 | 100 | -> | Plus |
arm_X | 4617401..4617600 | 17..216 | 100 | -> | Plus |
arm_X | 4620269..4620385 | 390..506 | 100 | -> | Plus |
arm_X | 4620460..4620747 | 507..794 | 100 | -> | Plus |
arm_X | 4620908..4621134 | 795..1021 | 100 | -> | Plus |
arm_X | 4621392..4621595 | 1022..1225 | 100 | -> | Plus |
arm_X | 4621656..4622081 | 1226..1653 | 99 | | Plus |
BO12801.pep Sequence
Translation from 16 to 1669
> BO12801.pep
MTMSSTSTATATSTATATLDEANATVGEMFSDADMAEVRHVVQRILVPCV
FVIGLLGNSVSIYVLTRKRMRCTTNIYLTALAITDIAYLTCQLILSLQHY
DYPKYHFKLYWQLYGYFVWLCDSFGYISIYIAVCFTIERFIAIRYPLKRQ
TFCTESLAKKVIAAVAIFCLLSTLSTAFEHTITIGTRQIDDAYQPCNQTV
ANISPMPPPPVAVTPPLATPPLPTPATIWQSPDSAMESTTSGSSNQLVDW
GSGSGDGEPENIPRHRRHWQSSGFVTLPTLRKTLEEQDQKVADAAQRSGV
TESLLQLWRRKRSAENHNINNTDAFAFNVTEYCQNVTYYNHGLSELGYDE
LYSYLWNLFTLLVFVVFPLLLLATFNSILILLVHRSKNLRGDLTNASSIR
RTKRKSNSGLKGSVSQENRVTITLIAVVLMFIVCQLPWAIYLIVNQYMEI
QIGTQVVAGNVCNLLASLHAASNFFLYCVLSDKYRKTVRELITGYRYRRR
HARNNTSLYVPHTTTTLTQINGDHYGSNYGGAGSRRNRNTGRLIAASFLD
H
BO12801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-R-PE | 545 | CG6986-PE | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PD | 545 | CG6986-PD | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PC | 545 | CG6986-PC | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PB | 545 | CG6986-PB | 1..545 | 1..545 | 2840 | 100 | Plus |
Proc-R-PA | 545 | CG6986-PA | 1..545 | 1..545 | 2840 | 100 | Plus |