Clone BO12801 Report

Search the DGRC for BO12801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptProc-R-RA
Protein status:BO12801.pep: validated full length
Sequenced Size:1669

Clone Sequence Records

BO12801.3prime Sequence

856 bp (777 high quality bases) assembled on 2006-05-08

> BO12801.3prime
ATGGTCTAGAAAGCTTGCCGCTATCAGGCGACCCGTATTACGATTTCGAC
GACTTCCGGCTCCGCCATAATTACTACCATAATGATCGCCATTTATTTGG
GTCAGTGTAGTCGTTGTATGCGGCACATAGAGACTCGTATTGTTACGCGC
ATGTCGACGTCTATAGCGATATCCCGTTATCAGTTCTCGAACCGTCTTTC
GGTACTTATCGGAAAGTACACAGTATAGAAAAAAATTGGATGCCGCATGT
AGGGAGGCCAATAGGTTACACACATTTCCCGCCACCACCTGAGTGCCAAT
TTGAATTTCCATATACTGATTGACTATCAAATAGATCGCCCAAGGCAATT
GGCAAACTATGAACATTAACACCACCGCAATAAGTGTGATCGTCACGCGA
TTTTCCTGCGATACGCTGCCTTTTAGTCCAGAATTTGATTTGCGTTTTGT
GCGCCTTATGCTGCTGGCATTGGTCAGGTCACCACGCAGATTCTTGGACC
GATGAACCAATAGAATGAGAATGGAGTTGAAGGTGGCCAATAGAAGTAGG
GGGAATACCACGAAGACCAGCAGGGTGAACAGGTTCCACAGATAGCTGTA
TAGCTCATCATAGCCCAGTTCCGAAAGACCATGATTGTAATAGGTCACAT
TTTGACAGTATTCCGTTACGTTAAATGCGAATGCATCCGTATTGTTGATG
TTGTGATTCTCAGCGCTGCGCTTGCGACGCCACAATTGCAGCAAACTCTC
TGTGACCCCTGACCTCTGGGCCGCGTCTGCCACCTTCTGATCCTGCTCCT
CCAGCGTTTTTCTCAGTGTGGGCAGCGTCCCAAATCCCGATGACTGCCAG
TGACGG

BO12801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6986-PA 1638 CG6986-RA 798..1635 856..19 4140 99.7 Minus
CG6986-PB 1638 CG6986-RB 798..1635 856..19 4140 99.7 Minus
CG6986-PC 1638 CG6986-RC 798..1635 856..19 4140 99.7 Minus
CG6986-PD 1638 CG6986-RD 798..1635 856..19 4140 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 1251..2088 856..19 4160 99.8 Minus
Proc-R-RD 3005 CG6986-RD 1472..2309 856..19 4160 99.8 Minus
Proc-R-RC 2672 CG6986-RC 1139..1976 856..19 4160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4727623..4728048 444..19 2130 100 Minus
X 23542271 X 4726894..4727105 856..645 1030 99.1 Minus
X 23542271 X 4727359..4727562 648..445 1020 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:14:36 has no hits.

BO12801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:13 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PA 798..1638 16..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:41 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PD 798..1638 16..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:09 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 1428..2269 15..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:02 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 1139..1980 15..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:02 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4726894..4727101 649..856 99 -> Minus
X 4727359..4727562 445..648 100 -> Minus
X 4727623..4728052 15..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:09 Download gff for BO12801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4620927..4621134 649..856 99 -> Minus
arm_X 4621392..4621595 445..648 100 -> Minus
arm_X 4621656..4622085 15..444 99   Minus

BO12801.5prime Sequence

889 bp (772 high quality bases) assembled on 2006-05-08

> BO12801.5prime
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAAGTG

BO12801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6986-PA 1638 CG6986-RA 1..869 17..885 4345 100 Plus
CG6986-PB 1638 CG6986-RB 1..869 17..885 4345 100 Plus
CG6986-PC 1638 CG6986-RC 1..869 17..885 4345 100 Plus
CG6986-PD 1638 CG6986-RD 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 453..1326 16..889 4355 99.9 Plus
Proc-R-RD 3005 CG6986-RD 674..1547 16..889 4355 99.9 Plus
Proc-R-RC 2672 CG6986-RC 341..1214 16..889 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4726424..4726714 504..794 1455 100 Plus
X 23542271 X 4723367..4723567 16..216 1005 100 Plus
X 23542271 X 4725021..4725196 216..391 880 100 Plus
X 23542271 X 4726235..4726352 389..506 590 100 Plus
X 23542271 X 4726873..4726969 793..889 470 99 Plus
Blast to na_te.dros performed on 2015-02-11 23:30:58 has no hits.

BO12801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:14 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:43 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6986-PD 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:59 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 626..1503 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:36 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 337..1214 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:36 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4723363..4723567 9..216 98 -> Plus
X 4725022..4725194 217..389 100 -> Plus
X 4726236..4726352 390..506 100 -> Plus
X 4726427..4726714 507..794 100 -> Plus
X 4726875..4726969 795..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:59 Download gff for BO12801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4617396..4617600 9..216 98 -> Plus
arm_X 4619055..4619227 217..389 100 -> Plus
arm_X 4620269..4620385 390..506 100 -> Plus
arm_X 4620460..4620747 507..794 100 -> Plus
arm_X 4620908..4621002 795..889 98   Plus

BO12801.complete Sequence

1669 bp assembled on 2007-10-25

GenBank Submission: FJ632574

> BO12801.complete
GAAGTTATCAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGA
CGTCGACAGCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAA
ATGTTTTCGGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCAT
TTTGGTGCCGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCA
TTTATGTTTTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTA
ACGGCACTGGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCT
GTCACTCCAGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGC
AGCTCTATGGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCA
ATTTACATAGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTA
TCCGCTCAAGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGA
TAGCAGCGGTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTC
GAGCATACAATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCC
GTGCAACCAAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGG
CAGTCACGCCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATT
TGGCAATCGCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAA
TCAGCTCGTCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACA
TTCCACGACATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCC
ACACTGAGAAAAACGCTGGAGGAGCAGGATCAGAAGGTGGCAGACGCGGC
CCAGAGGTCAGGGGTCACAGAGAGTTTGCTGCAATTGTGGCGTCGCAAGC
GCAGCGCTGAGAATCACAACATCAACAATACGGATGCATTCGCATTTAAC
GTAACGGAATACTGTCAAAATGTGACCTATTACAATCATGGTCTTTCGGA
ACTGGGCTATGATGAGCTATACAGCTATCTGTGGAACCTGTTCACCCTGC
TGGTCTTCGTGGTATTCCCCCTACTTCTATTGGCCACCTTCAACTCCATT
CTCATTCTATTGGTTCATCGGTCCAAGAATCTGCGTGGTGACCTGACCAA
TGCCAGCAGCATAAGGCGCACAAAACGCAAATCAAATTCTGGACTAAAAG
GCAGCGTATCGCAGGAAAATCGCGTGACGATCACACTTATTGCGGTGGTG
TTAATGTTCATAGTTTGCCAATTGCCTTGGGCGATCTATTTGATAGTCAA
TCAGTATATGGAAATTCAAATTGGCACTCAGGTGGTGGCGGGAAATGTGT
GTAACCTATTGGCCTCCCTACATGCGGCATCCAATTTTTTTCTATACTGT
GTACTTTCCGATAAGTACCGAAAGACGGTTCGAGAACTGATAACGGGATA
TCGCTATAGACGTCGACATGCGCGTAACAATACGAGTCTCTATGTGCCGC
ATACAACGACTACACTGACCCAAATAAATGGCGATCATTATGGTAGTAAT
TATGGCGGAGCCGGAAGTCGTCGAAATCGTAATACGGGTCGCCTGATAGC
GGCAAGCTTTCTAGACCAT

BO12801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 1638 CG6986-PE 1..1635 17..1651 8175 100 Plus
Proc-R-RD 1638 CG6986-PD 1..1635 17..1651 8175 100 Plus
Proc-R-RC 1638 CG6986-PC 1..1635 17..1651 8175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-RE 2784 CG6986-RE 453..2088 16..1651 8180 100 Plus
Proc-R-RD 3005 CG6986-RD 674..2309 16..1651 8180 100 Plus
Proc-R-RC 2672 CG6986-RC 341..1976 16..1651 8180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4727623..4728048 1226..1651 2130 100 Plus
X 23542271 X 4726424..4726714 504..794 1455 100 Plus
X 23542271 X 4726873..4727105 793..1025 1165 100 Plus
X 23542271 X 4727359..4727562 1022..1225 1020 100 Plus
X 23542271 X 4723367..4723567 16..216 1005 100 Plus
X 23542271 X 4725021..4725196 216..391 880 100 Plus
X 23542271 X 4726235..4726352 389..506 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:48:17 has no hits.

BO12801.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:52 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6986-RC 1..1638 17..1654 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:25 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6986-RC 335..1978 9..1655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:18 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RB 631..2265 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:54 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
CG6986-RC 340..1974 17..1653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:21 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-R-RC 342..1976 17..1653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:21 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
X 4727359..4727562 1022..1225 100 -> Plus
X 4723368..4723567 17..216 100 -> Plus
X 4725022..4725194 217..389 100 -> Plus
X 4726236..4726352 390..506 100 -> Plus
X 4726427..4726714 507..794 100 -> Plus
X 4726875..4727101 795..1021 100 -> Plus
X 4727623..4728048 1226..1653 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:18 Download gff for BO12801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4619055..4619227 217..389 100 -> Plus
arm_X 4617401..4617600 17..216 100 -> Plus
arm_X 4620269..4620385 390..506 100 -> Plus
arm_X 4620460..4620747 507..794 100 -> Plus
arm_X 4620908..4621134 795..1021 100 -> Plus
arm_X 4621392..4621595 1022..1225 100 -> Plus
arm_X 4621656..4622081 1226..1653 99   Plus

BO12801.pep Sequence

Translation from 16 to 1669

> BO12801.pep
MTMSSTSTATATSTATATLDEANATVGEMFSDADMAEVRHVVQRILVPCV
FVIGLLGNSVSIYVLTRKRMRCTTNIYLTALAITDIAYLTCQLILSLQHY
DYPKYHFKLYWQLYGYFVWLCDSFGYISIYIAVCFTIERFIAIRYPLKRQ
TFCTESLAKKVIAAVAIFCLLSTLSTAFEHTITIGTRQIDDAYQPCNQTV
ANISPMPPPPVAVTPPLATPPLPTPATIWQSPDSAMESTTSGSSNQLVDW
GSGSGDGEPENIPRHRRHWQSSGFVTLPTLRKTLEEQDQKVADAAQRSGV
TESLLQLWRRKRSAENHNINNTDAFAFNVTEYCQNVTYYNHGLSELGYDE
LYSYLWNLFTLLVFVVFPLLLLATFNSILILLVHRSKNLRGDLTNASSIR
RTKRKSNSGLKGSVSQENRVTITLIAVVLMFIVCQLPWAIYLIVNQYMEI
QIGTQVVAGNVCNLLASLHAASNFFLYCVLSDKYRKTVRELITGYRYRRR
HARNNTSLYVPHTTTTLTQINGDHYGSNYGGAGSRRNRNTGRLIAASFLD
H

BO12801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-R-PE 545 CG6986-PE 1..545 1..545 2840 100 Plus
Proc-R-PD 545 CG6986-PD 1..545 1..545 2840 100 Plus
Proc-R-PC 545 CG6986-PC 1..545 1..545 2840 100 Plus
Proc-R-PB 545 CG6986-PB 1..545 1..545 2840 100 Plus
Proc-R-PA 545 CG6986-PA 1..545 1..545 2840 100 Plus