Clone Sequence Records
BO12804.3prime Sequence
883 bp (779 high quality bases) assembled on 2006-05-08
> BO12804.3prime
ATGGTCTAGAAAGCTTGCCTCAATCTTGCCGAAGGGTGCCTCGCTGTTCA
CGGGGACATAGAAGTCACCCTCGACCATGTAGGCGTTGGTAATTGCTCCC
ATGCGAACGCTGGAGTAGGTGCTTCCGCAGTTCTTGGCAACGGCATCCTC
GTAGTCATGGCACTTAATGGATCCAAAGTTGTCCTCGGTGACGGCCTCGG
CGTAGTAGAGAACGGAGCGTGCGTGAGAGCAGGATCCGGTGGCGTCCAGT
CCGCATCCGGGCTGGCTCTTGCCTCCATTGGGGTAGAAGGCTCCCTTGCC
GATGGGCTTCAGGAATCCCAGTTTGCCGCCGTTGGTCTGGATGGACTCTA
CGTAGTGGGCATCATCGGTGGATAGACGCTTAGCGGGCTTATCGTAGCTG
AAGAGGGGGAGGGCAGGATCCAGACCCACAATGGTGTGAACGCGCTTGTC
TCCGACGGTCTTTCCGGCGTATCCAGCAACATGGGCTCCCAGGCTGTGTC
CGATCACCTCCAAGCTATCGTAGTCCAAGCCGTGGTGGTCGTGCAGGTAC
TTGATCATCTCACCAACCTTGCCACCGGCTCCAGGAACAGCCAGAACGGA
AGAGGCGTAGTCCACGGATCGGGCACGGGCCCAGTCAACGACGATCACGT
TGTAGTCGCCCTTGGACAACCAGGCCTTGGTGATGCGGGTGTTCATGTCG
TCGGAGTACCTCTGGGTCCAGCCGTGGATGACGAAGCGGGTGCCATGATC
CTTGTTGAAGTGGGAATCCTCGACGGAGCCGGACTTGGCCTTGATCTCCT
TGCCATCGGTGGGGTTCGACTTGGTGTAGACATAAAAATTCACGGCGTTG
GTGCTGAAGCGGCCTTCCATCTGGGCTCCGTTG
BO12804.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 1020 | CG6283-RA | 153..1017 | 883..19 | 4225 | 99.5 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 694..798 | 348..244 | 300 | 91.4 | Minus |
| CG6295-PA | 1017 | CG6295-RA | 712..779 | 321..254 | 290 | 97 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 951..1015 | 91..27 | 250 | 95.3 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 886..947 | 156..95 | 235 | 95.1 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 694..785 | 348..257 | 235 | 90.2 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 886..947 | 156..95 | 210 | 93.5 | Minus |
| CG17191-PA | 1014 | CG17191-RA | 922..980 | 108..50 | 195 | 93.2 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 382..434 | 663..611 | 190 | 94.3 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 951..1015 | 91..27 | 175 | 90.7 | Minus |
| CG17192-PA | 1014 | CG17192-RA | 592..641 | 438..389 | 175 | 94 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 388..440 | 657..605 | 165 | 92.4 | Minus |
| CG6295-PA | 1017 | CG6295-RA | 415..449 | 618..584 | 150 | 97.1 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 834..882 | 208..160 | 145 | 91.8 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 834..882 | 208..160 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 178..1042 | 883..19 | 4265 | 99.5 | Minus |
| CG6277-RA | 1085 | CG6277-RA | 337..1050 | 738..22 | 1470 | 80.6 | Minus |
| CG6271-RA | 1072 | CG6271-RA | 324..1041 | 742..22 | 1435 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020279..27021143 | 19..883 | 4265 | 99.5 | Plus |
| 3R | 32079331 | 3R | 27022106..27022819 | 22..738 | 1435 | 80.3 | Plus |
| 3R | 32079331 | 3R | 27024999..27025716 | 22..742 | 1410 | 80 | Plus |
| 3R | 32079331 | 3R | 27018667..27019319 | 23..675 | 910 | 76 | Plus |
| 3R | 32079331 | 3R | 27005982..27006607 | 50..675 | 805 | 75.2 | Plus |
| 3R | 32079331 | 3R | 27017226..27017878 | 29..681 | 700 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:30:46 has no hits.
BO12804.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:19 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 153..1020 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:49 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 153..1020 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:34 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 178..1042 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:47 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 178..1042 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:47 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020279..27021143 | 19..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:34 Download gff for
BO12804.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22846001..22846865 | 19..883 | 99 | | Plus |
BO12804.5prime Sequence
841 bp (753 high quality bases) assembled on 2006-05-08
> BO12804.5prime
GAAGTTATCAGTCGACATGAAGGTGTTTTTTGTTCTTGCCGCCTTACTGG
CAGCCGTGAGTGCCCTGCCCATTGAGGAGCGCGTCAATGGAGAGAATGGC
TGGTTCATCCCCAAGCTTGATGGAAGCTTCGAGTGGATGGACATGCAGGA
TGCCGAGGATCTTCTGGCCAACGGAGCCCAGATGGAGGGCCGCATCAGCA
CCAACGCCGTGAACTTCTATGTCTACACCAAGTCGAACCCCACCGATGGC
AAGGAGATCAAGGCCAAGTCCGGCTCCGTCGAGGATTCCCACTTCAACAA
GGATCATGGCACCCGCTTCGTCATCCACGGCTGGACCCAGAGGTACTCCG
ACGACATGAACACCCGCATCACCAAGGCCTGGTTGTCCAAGGGCGACTAC
AACGTGATCGTCGTTGACTGGGCCCGTGCCCGATCCGTGGACTACGCCTC
TTCCGTTCTGGCTGTTCCTGGAGCCGGTGGCAAGGTTGGTGAGATGATCA
AGTACCTGCACGACCACCACGGCTTGGACTACGATAGCTTGGAGGTGATC
GGACACAGCCTGGGAGCCCATGTTGCTGGATACGCCGGAAAGACCGTCGG
AGACAAGCGCGTTCACACCATTGTGGGTCTGGATCCTGCCCTCCCCCTCT
TCAGCTACGATAAGCCCGCTAAGCGTCTATCCACCGATGATGCCCACTAC
GTAGAGTCCATCCAGACCAACGGCGGCAAACTGGGATTCCTGAAGCCCAT
CGGCAAGGGAGCCTTCTACCCCAATGGAGGCAAGAGCCAGCCCGGATGCG
GACTGCACGCCCCGGATCCTGCTCTCACGCACGCTCCGTTC
BO12804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 1020 | CG6283-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 694..792 | 704..802 | 295 | 91.9 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 712..779 | 731..798 | 290 | 97 | Plus |
| CG6271-PA | 1026 | CG6271-RA | 694..785 | 704..795 | 235 | 90.2 | Plus |
| CG6271-PA | 1026 | CG6271-RA | 382..434 | 389..441 | 190 | 94.3 | Plus |
| CG17192-PA | 1014 | CG17192-RA | 592..641 | 614..663 | 175 | 94 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 388..440 | 395..447 | 165 | 92.4 | Plus |
| CG6283-PA | 1020 | CG6283-RA | 797..826 | 812..841 | 150 | 100 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 415..449 | 434..468 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..851 | 15..841 | 4100 | 99.8 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..822 | 314..802 | 870 | 78.9 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..810 | 310..799 | 775 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020470..27021256 | 841..56 | 3870 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27022334..27022819 | 802..314 | 835 | 78.5 | Minus |
| 3R | 32079331 | 3R | 27025230..27025716 | 799..310 | 750 | 77.3 | Minus |
| 3R | 32079331 | 3R | 27006186..27006607 | 798..377 | 565 | 75.6 | Minus |
| 3R | 32079331 | 3R | 27017499..27017878 | 750..371 | 565 | 76.6 | Minus |
| 3R | 32079331 | 3R | 27018916..27019319 | 780..377 | 565 | 76 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 56..15 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 159..59 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:51:11 has no hits.
BO12804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:20 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 1..826 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:25:51 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-PA | 1..826 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:07:03 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..851 | 15..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:10 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..851 | 15..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:10 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020470..27021255 | 57..841 | 99 | <- | Minus |
| 3R | 27021314..27021355 | 15..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:07:03 Download gff for
BO12804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22847036..22847077 | 15..56 | 100 | | Minus |
| arm_3R | 22846192..22846977 | 57..841 | 99 | <- | Minus |
BO12804.complete Sequence
1051 bp assembled on 2006-10-11
GenBank Submission: FJ632576
> BO12804.complete
GAAGTTATCAGTCGACATGAAGGTGTTTTTTGTTCTTGCCGCCTTACTGG
CAGCCGTGAGTGCCCTGCCCATTGAGGAGCGCGTCAATGGAGAGAATGGC
TGGTTCATCCCCAAGCTTGATGGAAGCTTCGAGTGGATGGACATGCAGGA
TGCCGAGGATCTTCTGGCCAACGGAGCCCAGATGGAGGGCCGCATCAGCA
CCAACGCCGTGAACTTCTATGTCTACACCAAGTCGAACCCCACCGATGGC
AAGGAGATCAAGGCCAAGTCCGGCTCCGTCGAGGATTCCCACTTCAACAA
GGATCATGGCACCCGCTTCGTCATCCACGGCTGGACCCAGAGGTACTCCG
ACGACATGAACACCCGCATCACCAAGGCCTGGTTGTCCAAGGGCGACTAC
AACGTGATCGTCGTTGACTGGGCCCGTGCCCGATCCGTGGACTACGCCTC
TTCCGTTCTGGCTGTTCCTGGAGCCGGTGGCAAGGTTGGTGAGATGATCA
AGTACCTGCACGACCACCACGGCTTGGACTACGATAGCTTGGAGGTGATC
GGACACAGCCTGGGAGCCCATGTTGCTGGATACGCCGGAAAGACCGTCGG
AGACAAGCGCGTTCACACCATTGTGGGTCTGGATCCTGCCCTCCCCCTCT
TCAGCTACGATAAGCCCGCTAAGCGTCTATCCACCGATGATGCCCACTAC
GTAGAGTCCATCCAGACCAACGGCGGCAAACTGGGATTCCTGAAGCCCAT
CGGCAAGGGAGCCTTCTACCCCAATGGAGGCAAGAGCCAGCCCGGATGCG
GACTGGACGCCACCGGATCCTGCTCTCACGCACGCTCCGTTCTCTACTAC
GCCGAGGCCGTCACCGAGGACAACTTTGGATCCATTAAGTGCCATGACTA
CGAGGATGCCGTTGCCAAGAACTGCGGAAGCACCTACTCCAGCGTTCGCA
TGGGAGCAATTACCAACGCCTACATGGTCGAGGGTGACTTCTATGTCCCC
GTGAACAGCGAGGCACCCTTCGGCAAGATTGAGGCAAGCTTTCTAGACCA
T
BO12804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1020 | CG6283-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| CG6277-RA | 1026 | CG6277-PA | 307..1020 | 314..1030 | 1435 | 80.3 | Plus |
| CG6271-RA | 1026 | CG6271-PA | 303..1020 | 310..1030 | 1410 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..1042 | 15..1033 | 5095 | 100 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..1050 | 314..1030 | 1435 | 80.3 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..1041 | 310..1030 | 1410 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020279..27021256 | 1033..56 | 4890 | 100 | Minus |
| 3R | 32079331 | 3R | 27022106..27022819 | 1030..314 | 1435 | 80.3 | Minus |
| 3R | 32079331 | 3R | 27024999..27025716 | 1030..310 | 1410 | 80 | Minus |
| 3R | 32079331 | 3R | 27018667..27019319 | 1029..377 | 910 | 76 | Minus |
| 3R | 32079331 | 3R | 27005982..27006607 | 1002..377 | 805 | 75.2 | Minus |
| 3R | 32079331 | 3R | 27017226..27017878 | 1023..371 | 700 | 73.8 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 56..15 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 159..59 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:43:30 has no hits.
BO12804.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:15 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 1..1020 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:47 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1042 | 15..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:08 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 26..1042 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:16 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1042 | 15..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:57 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 26..1042 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:57 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020277..27021255 | 57..1035 | 99 | <- | Minus |
| 3R | 27021314..27021353 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:08 Download gff for
BO12804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22845999..22846977 | 57..1035 | 99 | <- | Minus |
| arm_3R | 22847036..22847075 | 17..56 | 100 | | Minus |
BO12804.pep Sequence
Translation from 16 to 1051
> BO12804.pep
MKVFFVLAALLAAVSALPIEERVNGENGWFIPKLDGSFEWMDMQDAEDLL
ANGAQMEGRISTNAVNFYVYTKSNPTDGKEIKAKSGSVEDSHFNKDHGTR
FVIHGWTQRYSDDMNTRITKAWLSKGDYNVIVVDWARARSVDYASSVLAV
PGAGGKVGEMIKYLHDHHGLDYDSLEVIGHSLGAHVAGYAGKTVGDKRVH
TIVGLDPALPLFSYDKPAKRLSTDDAHYVESIQTNGGKLGFLKPIGKGAF
YPNGGKSQPGCGLDATGSCSHARSVLYYAEAVTEDNFGSIKCHDYEDAVA
KNCGSTYSSVRMGAITNAYMVEGDFYVPVNSEAPFGKIEASFLDH
BO12804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-PA | 339 | CG6283-PA | 1..339 | 1..339 | 1802 | 100 | Plus |
| CG17191-PA | 337 | CG17191-PA | 1..337 | 1..339 | 1399 | 75.5 | Plus |
| CG17192-PA | 337 | CG17192-PA | 1..337 | 1..339 | 1282 | 69.3 | Plus |
| CG6277-PA | 341 | CG6277-PA | 1..340 | 1..338 | 1225 | 68.6 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..340 | 1..338 | 1224 | 68.6 | Plus |
