Clone BO12807 Report

Search the DGRC for BO12807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:7
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO12807.pep:
Sequenced Size:2278

Clone Sequence Records

BO12807.3prime Sequence

833 bp (743 high quality bases) assembled on 2006-05-08

> BO12807.3prime
ATGGTCTAGAAAGCTTGCTCTTTTATATGTGGTACACTCGTTCCCCTTGT
TTCCAATCGTCCAACTGTGATCAAGGATGTCTTCGCTTGTGAAACGAACG
TCTGGATCCGCCTGAAGCATATTGGCAATAAGATCGCGCACTCCGTCCCC
TATATCAGACCAGTAAGGATCTGGAAACTCATAAATGCCAGAGATAATAG
CGTCGAATAGCGGCTCCTGTTGGTTGTCAGGCGCTACAAACGGCGGAAAA
CCGCATAGAAGTATATACAAAATGATTCCAGCGGCCCAAACGTCAATCTT
TAGCCCATATCCGACTTCTAACAATATCTCTGGTGCTACATATGTGGGAG
TCCCGCAGACAGCATATAGAAGATCGTTTACCTCACATGCTAATCCAAAA
TCAGCAAGCTTTAGTTCAAGAACGTTTCCATGCTCATCCAATTTCACTAG
AAGATTCTCAGGTTTTATATCTCGATGCACAATGCCCATTGAATGCAGAT
AAGTCATGGCCGCACCCAAATGTCTAATCATAATGCGCGACTGGTTTTCT
GAGAACCTCGTTACCTGAGTTATAGCGTCGAATAAATCACCACCACTTAC
ATATTCCAGTACAAGATACATATTTGTATTTTGGTCTACACTCAAAATAA
GCGAAATTATATGCGGATGATTTAATTTTTTCATGACGCGAACTTCCGCG
TCTATGTAGTGTTCCTTGCCCTTGCATTTGTTCTTGTCTATTATTTTTAG
GGCGTAGGAATGACCAGTTTGGCGGTGCTTAATCTTAAACACAATGGCAA
AGTTGCCGTCGCCAATTATTCTTCCCAGAAAGT

BO12807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-PD 2247 CG17528-RD 1434..2244 829..19 4055 100 Minus
CG17528-PC 2247 CG17528-RC 1434..2244 829..19 4055 100 Minus
CG17528-PB 1266 CG17528-RB 453..1263 829..19 4055 100 Minus
CG17528-PA 1266 CG17528-RA 453..1263 829..19 4055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-RD 4686 CG17528-RD 1846..2660 833..19 4060 99.9 Minus
CG17528-RC 2645 CG17528-RC 1640..2454 833..19 4060 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4817452..4817735 19..302 1420 100 Plus
2R 25286936 2R 4818207..4818448 592..833 1195 99.6 Plus
2R 25286936 2R 4817996..4818155 446..605 755 98.1 Plus
2R 25286936 2R 4817785..4817934 298..447 750 100 Plus
Blast to na_te.dros performed 2015-02-12 12:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7531..7576 238..193 113 71.7 Minus

BO12807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:56 Download gff for BO12807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-PA 449..1266 16..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:29 Download gff for BO12807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 1640..2454 19..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:03 Download gff for BO12807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 1640..2454 19..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:03 Download gff for BO12807.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4817452..4817730 19..297 100 <- Plus
2R 4817785..4817934 298..447 100 <- Plus
2R 4817998..4818143 448..593 100 <- Plus
2R 4818209..4818448 594..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:29 Download gff for BO12807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 704957..705235 19..297 100 <- Plus
arm_2R 705290..705439 298..447 100 <- Plus
arm_2R 705503..705648 448..593 100 <- Plus
arm_2R 705714..705953 594..833 99   Plus

BO12807.5prime Sequence

785 bp (780 high quality bases) assembled on 2006-05-08

> BO12807.5prime
GAAGTTATCAGTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTC
ATTGTAATGATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACA
TCCCCTCAGAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTAT
TATCGAAAAGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACA
ATAGAGATTGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAG
TTGGATGATCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGT
GGTGGGGAAATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAG
TCACTTCCGAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCT
AGTGGGTCGGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAA
ACGTATCCCAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAAT
TCTACCGGAACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCT
AACGAACGGTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCT
GTTGGAAGAGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACT
TGTGTGGGAAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGC
TATGTTTGTTCCTGCAATAACGAGAATTTTAAGAAGGTTGAGTACAACAC
TGGTTCCCAGCCTTTGTCCAATCTGCCGCTGAGCA

BO12807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-PD 2247 CG17528-RD 1..769 17..785 3770 99.6 Plus
CG17528-PC 2247 CG17528-RC 1..769 17..785 3770 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-RD 4686 CG17528-RD 416..1185 16..785 3805 99.6 Plus
CG17528-RC 2645 CG17528-RC 210..979 16..785 3805 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4819288..4819936 664..16 3200 99.5 Minus
2R 25286936 2R 4819109..4819231 785..663 615 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:30:29 has no hits.

BO12807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:56 Download gff for BO12807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-PC 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:57 Download gff for BO12807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 210..978 16..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:30 Download gff for BO12807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 210..978 16..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:30 Download gff for BO12807.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4819110..4819229 665..784 100 <- Minus
2R 4819288..4819940 8..664 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:57 Download gff for BO12807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 706615..706734 665..784 100 <- Minus
arm_2R 706793..707445 8..664 98   Minus

BO12807.complete Sequence

2278 bp assembled on 2008-01-17

GenBank Submission: FJ632577

> BO12807.complete
GAAGTTATCAGTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTC
ATTGTAATGATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACA
TCCCCTCAGAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTAT
TATCGAAAAGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACA
ATAGAGATTGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAG
TTGGATGATCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGT
GGTGGGGAAATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAG
TCACTTCCGAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCT
AGTGGGTCGGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAA
ACGTATCCCAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAAT
TCTACCGGAACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCT
AACGAACGGTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCT
GTTGGAAGAGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACT
TGTGTGGGAAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGC
TATGTTTGTTCCTGCAATAACGAGAATTTTAAGAAGGTTGAGTACAACAC
TGGTTCCCAGCCTTTGTCCAATCTGCCGCTGAGCAATAGTCGTTCCAACA
GTCATCGATTGGCTAAGTGTCGACCATCGTCTCCCCTAAAAAATGGCTTG
CTTGCAGGCAGCAGTCCTTTCCCAGCTTGTGGCGGAGGAACGGGAAACGG
AAGTCCACTTATCGCTTCCAGATTAAGCGATCGAGTTACAGTGGTTCATC
CTCGTATTGTGACGCTGATACGTAGTGGAACTAAGTCGCGGCGTATTATG
CGATTATTGCTAAACAAGCGTAACAGCCCGAGCTTCGATCATGTGCTGAC
CGCCATTACGCAAGTGGTTCGCTTGGACACGGGCTATGTGAGAAAAGTAT
TCACTCTTTCCGGTATCCCAGTGGTCCGACTATCTGATTTTTTTGGGTCG
GATGATGTTTTCTTCGCTTATGGGACAGAGCGGATTAACACTGCGGAGGA
CTTTAAGTTAGAGGCGGAGGAGCAGCGAGCTATTAATGTCATTCGTAAGA
CCATGCGCACGACTGGAACCACATGCAAGGGACCTAAGCCTAAGATGCCC
ATAAAGAGCAAAAAAGTGTATCCTCCTTTGGTTGATTCGGAGCCATTTAA
GGCAGAAACCACACCAGAAGATGATAGGCATGCGGCTTTACTTACGAGCA
CTGGTATGGAGATCAATGAATTGCCATCGAATATTCGTAACACTTACTCT
CTGGGAAGAATAATTGGCGACGGCAACTTTGCCATTGTGTTTAAGATTAA
GCACCGCCAAACTGGTCATTCCTACGCCCTAAAAATAATAGACAAGAACA
AATGCAAGGGCAAGGAACACTACATAGACGCGGAAGTTCGCGTCATGAAA
AAATTAAATCATCCGCATATAATTTCGCTTATTTTGAGTGTAGACCAAAA
TACAAATATGTATCTTGTACTGGAATATGTAAGTGGTGGTGATTTATTCG
ACGCTATAACTCAGGTAACGAGGTTCTCAGAAAACCAGTCGCGCATTATG
ATTAGACATTTGGGTGCGGCCATGACTTATCTGCATTCAATGGGCATTGT
GCATCGAGATATAAAACCTGAGAATCTTCTAGTGAAATTGGATGAGCATG
GAAACGTTCTTGAACTAAAGCTTGCTGATTTTGGATTAGCATGTGAGGTA
AACGATCTTCTATATGCTGTCTGCGGGACTCCCACATATGTAGCACCAGA
GATATTGTTAGAAGTCGGATATGGGCTAAAGATTGACGTTTGGGCCGCTG
GAATCATTTTGTATATACTTCTATGCGGTTTTCCGCCGTTTGTAGCGCCT
GACAACCAACAGGAGCCGCTATTCGACGCTATTATCTCTGGCATTTATGA
GTTTCCAGATCCTTACTGGTCTGATATAGGGGACGGAGTGCGCGATCTTA
TTGCCAATATGCTTCAGGCGGATCCAGACGTTCGTTTCACAAGCGAAGAC
ATCCTTGATCACAGTTGGACGATTGGAAACAAGGGGAACGAGTGTACCAC
ATATAAAAGAGCAAGCTTTCTAGACCAT

BO12807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-RD 2247 CG17528-PD 1..2244 17..2260 11160 99.8 Plus
CG17528-RC 2247 CG17528-PC 1..2244 17..2260 11160 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-RD 4686 CG17528-RD 416..2660 16..2260 11165 99.8 Plus
CG17528-RC 2645 CG17528-RC 210..2454 16..2260 11165 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4818207..4819231 1687..663 5110 99.9 Minus
2R 25286936 2R 4819288..4819936 664..16 3200 99.5 Minus
2R 25286936 2R 4817452..4817735 2260..1977 1420 100 Minus
2R 25286936 2R 4817996..4818155 1833..1674 755 98.1 Minus
2R 25286936 2R 4817785..4817934 1981..1832 750 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:57:16 has no hits.

BO12807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:53 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 1..2247 17..2263 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:19 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 208..2451 17..2262 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:24 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 211..2454 17..2262 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:54 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 207..2451 16..2260 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:43 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
CG17528-RC 211..2454 17..2262 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:43 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4817449..4817730 1982..2262 99 <- Minus
2R 4817785..4817934 1832..1981 100 <- Minus
2R 4817998..4818143 1686..1831 100 <- Minus
2R 4818209..4819229 665..1685 99 <- Minus
2R 4819288..4819935 17..664 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:24 Download gff for BO12807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 704954..705235 1982..2262 99 <- Minus
arm_2R 705290..705439 1832..1981 100 <- Minus
arm_2R 705503..705648 1686..1831 100 <- Minus
arm_2R 705714..706734 665..1685 99 <- Minus
arm_2R 706793..707440 17..664 99   Minus

BO12807.pep Sequence

Translation from 16 to 2278

> BO12807.pep
MELEKVKINSLHCNDAVLSSLQASPSGTSPQSVPSKANVVTEASIIEKTN
QPHNVQEDNNYNRDCDSPESSSWEQDKELDDLRNLHSSSLTNSVVVGKST
GSLNGVYSITSVTSETKTLESVVTTNSASGSACLSNTPTADHIKKRIPSS
RTPTRKALRIKFYRNGDRFYPGITIPVSNERYRSFERLFEDLTRLLEENV
KIPGAVRTIYNLCGKKITSLDELEDGQSYVCSCNNENFKKVEYNTGSQPL
SNLPLSNSRSNSHRLAKCRPSSPLKNGLLAGSSPFPACGGGTGNGSPLIA
SRLSDRVTVVHPRIVTLIRSGTKSRRIMRLLLNKRNSPSFDHVLTAITQV
VRLDTGYVRKVFTLSGIPVVRLSDFFGSDDVFFAYGTERINTAEDFKLEA
EEQRAINVIRKTMRTTGTTCKGPKPKMPIKSKKVYPPLVDSEPFKAETTP
EDDRHAALLTSTGMEINELPSNIRNTYSLGRIIGDGNFAIVFKIKHRQTG
HSYALKIIDKNKCKGKEHYIDAEVRVMKKLNHPHIISLILSVDQNTNMYL
VLEYVSGGDLFDAITQVTRFSENQSRIMIRHLGAAMTYLHSMGIVHRDIK
PENLLVKLDEHGNVLELKLADFGLACEVNDLLYAVCGTPTYVAPEILLEV
GYGLKIDVWAAGIILYILLCGFPPFVAPDNQQEPLFDAIISGIYEFPDPY
WSDIGDGVRDLIANMLQADPDVRFTSEDILDHSWTIGNKGNECTTYKRAS
FLDH

BO12807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17528-PD 748 CG17528-PD 1..748 1..748 3858 99.6 Plus
CG17528-PC 748 CG17528-PC 1..748 1..748 3858 99.6 Plus
CaMKI-PI 390 CG1495-PI 20..293 465..741 552 38.7 Plus
CaMKI-PA 405 CG1495-PA 20..308 465..741 526 36.7 Plus
CaMKI-PG 405 CG1495-PG 20..308 465..741 526 36.7 Plus