Clone Sequence Records
BO12810.3prime Sequence
823 bp (729 high quality bases) assembled on 2006-05-08
> BO12810.3prime
ATGGTCTAGAAAGCTTGCGGACGGATTATTACGCTTGTTGGATCGTAATC
GCGCTAGTCCAGTGCGTTCTTCTTCCTCATCGCTTGTGTACTGATTAATG
CTGGTTCCACTTGCACTTCCTACTCGTGCTGAAGACGTTGCCTGCATGAG
CTCTTGGTCTGGTGCATTGCGGTTTTCATAAAGCAAGACTTGTAGCGTTT
CTTCGTATATACGAGCTTCCGGAAATTCAACTTTAGTATGCTTTCTGTCA
GTTGCATAAACTATTGAAGTGCAACACACTTCAGCTACTTTTTTTCCGTG
TCCGTAAAATGACCAGCAGCAGATTTCACTTGGCCCAATTACGTCTTTAA
TAAACAAAATTCGTTCGTTAAAGCGCAAAGAAAGCTTATCAAATAATTCA
ATATTTTTTAATAAGTTGTCGTCTGATGTACTTGTGTACGAATACTTGTT
ATTCTGCCGCTGAACCACAAGAATAACAGCCGGCTTTAAAGAAACACTTA
ATAAAAGCTGCTCTTCCTTTTGTGAAGTTATAAGTGGAATGCGGCAAATT
GGCTTTGGCTCCTGATGAGCATATAGTGCCCGTTCACAAGAAATAGCTAA
CTCGGTAATGCAGTAGTATTTGGCTTCGGCAAGCAATTCTGCAATTTCCT
TGTTAGTTTCTGGTAATGGAACAGTGCCATCTCTTAAATAATTAAGAATG
ATACCAAAATGATTTCCACAGCGATCGATTAAAATCCATCCTTCCGAATC
AGTCAGCACTTCCATTCTACCACTAAACATTGCGCTCAGCATTGTGTCAT
TGTTTTTCGTCAGGGTTCCAATT
BO12810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 906 | CG10465-RA | 99..903 | 823..19 | 4000 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 352..1156 | 823..19 | 4010 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339791..5340514 | 19..742 | 3620 | 100 | Plus |
2R | 25286936 | 2R | 5340561..5340644 | 740..823 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:30:48 has no hits.
BO12810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:29 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 99..906 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:00 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 99..906 | 16..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:52 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 352..1156 | 19..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:44 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 352..1156 | 19..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:44 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339791..5340512 | 19..740 | 100 | <- | Plus |
2R | 5340562..5340644 | 741..823 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:52 Download gff for
BO12810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227296..1228017 | 19..740 | 100 | <- | Plus |
arm_2R | 1228067..1228149 | 741..823 | 98 | | Plus |
BO12810.5prime Sequence
771 bp (770 high quality bases) assembled on 2006-05-08
> BO12810.5prime
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAA
BO12810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 906 | CG10465-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 254..1008 | 17..771 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339939..5340514 | 771..196 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 5340561..5340742 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 00:04:23 has no hits.
BO12810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:30 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:02 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:45 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 247..1006 | 10..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:10 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 247..1006 | 10..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:10 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339941..5340512 | 198..769 | 100 | <- | Minus |
2R | 5340562..5340749 | 10..197 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:45 Download gff for
BO12810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227446..1228017 | 198..769 | 100 | <- | Minus |
arm_2R | 1228067..1228254 | 10..197 | 98 | | Minus |
BO12810.complete Sequence
937 bp assembled on 2006-10-11
GenBank Submission: FJ632578
> BO12810.complete
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCACCAGACCAAGAGCTCATGCAGGCAA
CGTCTTCAGCACGAGTAGGAAGTGCAAGTGGAACCAGCATTAATCAGTAC
ACAAGCGATGAGGAAGAAGAACGCACTGGACTAGCGCGATTACGATCCAA
CAAGCGTAATAATCCGTCCGCAAGCTTTCTAGACCAT
BO12810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 906 | CG10465-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-RA | 1241 | CG10465-RA | 254..1156 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5339791..5340514 | 919..196 | 3620 | 100 | Minus |
2R | 25286936 | 2R | 5340561..5340742 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:59:56 has no hits.
BO12810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:17 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:49 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 243..1152 | 10..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:20 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 254..1156 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:17 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 243..1152 | 10..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:46 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10465-RA | 254..1156 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:46 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5339788..5340512 | 198..921 | 99 | <- | Minus |
2R | 5340562..5340742 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:20 Download gff for
BO12810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1227293..1228017 | 198..921 | 99 | <- | Minus |
arm_2R | 1228067..1228247 | 17..197 | 100 | | Minus |
BO12810.pep Sequence
Translation from 16 to 937
> BO12810.pep
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
SASFLDH
BO12810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10465-PA | 301 | CG10465-PA | 1..301 | 1..301 | 1558 | 100 | Plus |
CG14647-PB | 335 | CG14647-PB | 33..196 | 18..170 | 163 | 33.3 | Plus |
inc-PC | 211 | CG32810-PC | 14..152 | 11..144 | 159 | 32.6 | Plus |
inc-PD | 211 | CG32810-PD | 14..152 | 11..144 | 159 | 32.6 | Plus |
inc-PB | 211 | CG32810-PB | 14..152 | 11..144 | 159 | 32.6 | Plus |