Clone BO12810 Report

Search the DGRC for BO12810

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG10465-RA
Protein status:BO12810.pep: validated full length
Sequenced Size:937

Clone Sequence Records

BO12810.3prime Sequence

823 bp (729 high quality bases) assembled on 2006-05-08

> BO12810.3prime
ATGGTCTAGAAAGCTTGCGGACGGATTATTACGCTTGTTGGATCGTAATC
GCGCTAGTCCAGTGCGTTCTTCTTCCTCATCGCTTGTGTACTGATTAATG
CTGGTTCCACTTGCACTTCCTACTCGTGCTGAAGACGTTGCCTGCATGAG
CTCTTGGTCTGGTGCATTGCGGTTTTCATAAAGCAAGACTTGTAGCGTTT
CTTCGTATATACGAGCTTCCGGAAATTCAACTTTAGTATGCTTTCTGTCA
GTTGCATAAACTATTGAAGTGCAACACACTTCAGCTACTTTTTTTCCGTG
TCCGTAAAATGACCAGCAGCAGATTTCACTTGGCCCAATTACGTCTTTAA
TAAACAAAATTCGTTCGTTAAAGCGCAAAGAAAGCTTATCAAATAATTCA
ATATTTTTTAATAAGTTGTCGTCTGATGTACTTGTGTACGAATACTTGTT
ATTCTGCCGCTGAACCACAAGAATAACAGCCGGCTTTAAAGAAACACTTA
ATAAAAGCTGCTCTTCCTTTTGTGAAGTTATAAGTGGAATGCGGCAAATT
GGCTTTGGCTCCTGATGAGCATATAGTGCCCGTTCACAAGAAATAGCTAA
CTCGGTAATGCAGTAGTATTTGGCTTCGGCAAGCAATTCTGCAATTTCCT
TGTTAGTTTCTGGTAATGGAACAGTGCCATCTCTTAAATAATTAAGAATG
ATACCAAAATGATTTCCACAGCGATCGATTAAAATCCATCCTTCCGAATC
AGTCAGCACTTCCATTCTACCACTAAACATTGCGCTCAGCATTGTGTCAT
TGTTTTTCGTCAGGGTTCCAATT

BO12810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 906 CG10465-RA 99..903 823..19 4000 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 352..1156 823..19 4010 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339791..5340514 19..742 3620 100 Plus
2R 25286936 2R 5340561..5340644 740..823 405 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:30:48 has no hits.

BO12810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:29 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 99..906 16..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:00 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 99..906 16..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:52 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 352..1156 19..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:44 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 352..1156 19..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:44 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5339791..5340512 19..740 100 <- Plus
2R 5340562..5340644 741..823 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:52 Download gff for BO12810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227296..1228017 19..740 100 <- Plus
arm_2R 1228067..1228149 741..823 98   Plus

BO12810.5prime Sequence

771 bp (770 high quality bases) assembled on 2006-05-08

> BO12810.5prime
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAA

BO12810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 906 CG10465-RA 1..755 17..771 3775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 254..1008 17..771 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339939..5340514 771..196 2880 100 Minus
2R 25286936 2R 5340561..5340742 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-10 00:04:23 has no hits.

BO12810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:30 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:02 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:45 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..1006 10..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:01:10 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..1006 10..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:01:10 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5339941..5340512 198..769 100 <- Minus
2R 5340562..5340749 10..197 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:45 Download gff for BO12810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227446..1228017 198..769 100 <- Minus
arm_2R 1228067..1228254 10..197 98   Minus

BO12810.complete Sequence

937 bp assembled on 2006-10-11

GenBank Submission: FJ632578

> BO12810.complete
GAAGTTATCAGTCGACATGTCGGAATCAATGTCAGGTGATCACAAAATTT
TATTAAAAGGACATTCCTCCCAATATTTAAAACTTAATGTTGGTGGTCAT
TTATATTATACCACAATTGGAACACTGACGAAAAACAATGACACAATGCT
GAGCGCAATGTTTAGTGGTAGAATGGAAGTGCTGACTGATTCGGAAGGAT
GGATTTTAATCGATCGCTGTGGAAATCATTTTGGTATCATTCTTAATTAT
TTAAGAGATGGCACTGTTCCATTACCAGAAACTAACAAGGAAATTGCAGA
ATTGCTTGCCGAAGCCAAATACTACTGCATTACCGAGTTAGCTATTTCTT
GTGAACGGGCACTATATGCTCATCAGGAGCCAAAGCCAATTTGCCGCATT
CCACTTATAACTTCACAAAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTT
AAAGCCGGCTGTTATTCTTGTGGTTCAGCGGCAGAATAACAAGTATTCGT
ACACAAGTACATCAGACGACAACTTATTAAAAAATATTGAATTATTTGAT
AAGCTTTCTTTGCGCTTTAACGAACGAATTTTGTTTATTAAAGACGTAAT
TGGGCCAAGTGAAATCTGCTGCTGGTCATTTTACGGACACGGAAAAAAAG
TAGCTGAAGTGTGTTGCACTTCAATAGTTTATGCAACTGACAGAAAGCAT
ACTAAAGTTGAATTTCCGGAAGCTCGTATATACGAAGAAACGCTACAAGT
CTTGCTTTATGAAAACCGCAATGCACCAGACCAAGAGCTCATGCAGGCAA
CGTCTTCAGCACGAGTAGGAAGTGCAAGTGGAACCAGCATTAATCAGTAC
ACAAGCGATGAGGAAGAAGAACGCACTGGACTAGCGCGATTACGATCCAA
CAAGCGTAATAATCCGTCCGCAAGCTTTCTAGACCAT

BO12810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 906 CG10465-PA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 254..1156 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339791..5340514 919..196 3620 100 Minus
2R 25286936 2R 5340561..5340742 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:59:56 has no hits.

BO12810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:17 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:49 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 243..1152 10..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:20 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 254..1156 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:17 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 243..1152 10..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:46 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 254..1156 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:46 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5339788..5340512 198..921 99 <- Minus
2R 5340562..5340742 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:20 Download gff for BO12810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227293..1228017 198..921 99 <- Minus
arm_2R 1228067..1228247 17..197 100   Minus

BO12810.pep Sequence

Translation from 16 to 937

> BO12810.pep
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
SASFLDH

BO12810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 301 CG10465-PA 1..301 1..301 1558 100 Plus
CG14647-PB 335 CG14647-PB 33..196 18..170 163 33.3 Plus
inc-PC 211 CG32810-PC 14..152 11..144 159 32.6 Plus
inc-PD 211 CG32810-PD 14..152 11..144 159 32.6 Plus
inc-PB 211 CG32810-PB 14..152 11..144 159 32.6 Plus