Clone Sequence Records
BO12811.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO12811.5prime
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGGCAAGCTTTCTAGACC
BO12811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PA | 456 | CG3746-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..467 | 16..469 | 2270 | 100 | Plus |
CG3746-RA | 569 | CG3746-RA | 14..467 | 16..469 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 345..16 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 22649220..22649348 | 469..341 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:54:36 has no hits.
BO12811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:32 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:05 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:39 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..471 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:22 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..471 | 8..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:22 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649216..22649343 | 346..475 | 97 | <- | Minus |
2R | 22649408..22649745 | 8..345 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:39 Download gff for
BO12811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536721..18536848 | 346..475 | 97 | <- | Minus |
arm_2R | 18536913..18537250 | 8..345 | 99 | | Minus |
BO12811.3prime Sequence
486 bp (485 high quality bases) assembled on 2006-05-08
> BO12811.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGCGCTGGATTCCCACTTTGCCGC
CACACGAGCTGCAGTAAACGCCCTTGGTGGTCCACTCCCGATTGCAACCG
CACCAGGTGCACACGCAGCAGATCCAGAAGAGCGGAAAGATGCAGGATAG
CAGGCTGAGGCAGAAACTGGCGTCCTTGCAGCTGGCTGCTCTCATCACAG
CCGCCTCACTCCTCTCGCNGGCACAGTGGACACAACAGCTTGTAGGTGGA
GGGCCCAACGGCGTAGTACCGGATGGATGGTTCCTGTTGGGCGGCGGAAA
GTGGAGCAGCTGACTGCTGGGGGATCAGGGTCACCTTCTCCGACGCATGA
TCATCGATGAAGGGCACCAGACCATCCTCCAGGACCACATTGGCAATAAT
ATTCCTGGCACGTTCCTCCGCCGTTCCGGCGGGCACCAATCTCACCCGTA
ACCTCTCCACCTGCTGCTCCATGTCGACTGATAACT
BO12811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PA | 456 | CG3746-RA | 1..253 | 472..220 | 1265 | 100 | Minus |
CG3746-PA | 456 | CG3746-RA | 254..453 | 218..19 | 1000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..467 | 473..19 | 2250 | 99.8 | Minus |
CG3746-RA | 569 | CG3746-RA | 14..467 | 473..19 | 2250 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 143..473 | 1605 | 99.7 | Plus |
2R | 25286936 | 2R | 22649220..22649348 | 19..147 | 630 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:42:30 has no hits.
BO12811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:31 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 18..472 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:03 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-PA | 1..456 | 18..472 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:08 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..471 | 13..481 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:17 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 6..471 | 13..481 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:17 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649216..22649343 | 13..142 | 97 | <- | Plus |
2R | 22649408..22649745 | 143..481 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:08 Download gff for
BO12811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536721..18536848 | 13..142 | 97 | <- | Plus |
arm_2R | 18536913..18537250 | 143..481 | 98 | | Plus |
BO12811.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632579
> BO12811.complete
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGGCAAGCTTTCTAGACCAT
BO12811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 456 | CG3746-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
CG3746-RA | 456 | CG3746-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-RB | 692 | CG3746-RB | 14..467 | 16..469 | 2270 | 100 | Plus |
CG3746-RA | 569 | CG3746-RA | 14..467 | 16..469 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22649408..22649737 | 345..16 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 22649220..22649348 | 469..341 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:07 has no hits.
BO12811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:00 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:04 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..467 | 11..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:14 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 15..467 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:00 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 1..467 | 11..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:59 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3746-RA | 15..467 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:59 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22649216..22649343 | 346..471 | 98 | <- | Minus |
2R | 22649408..22649736 | 17..345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:14 Download gff for
BO12811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18536721..18536848 | 346..471 | 98 | <- | Minus |
arm_2R | 18536913..18537241 | 17..345 | 100 | | Minus |
BO12811.pep Sequence
Translation from 16 to 487
> BO12811.pep
MEQQVERLRVRLVPAGTAEERARNIIANVVLEDGLVPFIDDHASEKVTLI
PQQSAAPLSAAQQEPSIRYYAVGPSTYKLLCPLCRERSEAAVMRAASCKD
ASFCLSLLSCIFPLFWICCVCTWCGCNREWTTKGVYCSSCGGKVGIQRKA
KASFLDH
BO12811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3746-PB | 151 | CG3746-PB | 1..151 | 1..151 | 806 | 100 | Plus |
CG3746-PA | 151 | CG3746-PA | 1..151 | 1..151 | 806 | 100 | Plus |
CG43326-PB | 123 | CG43326-PB | 23..117 | 53..145 | 155 | 35.1 | Plus |
CG43326-PA | 123 | CG30217-PB | 23..117 | 53..145 | 155 | 35.1 | Plus |