Clone BO12811 Report

Search the DGRC for BO12811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3746-RA
Protein status:BO12811.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO12811.5prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO12811.5prime
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGGCAAGCTTTCTAGACC

BO12811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PA 456 CG3746-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..467 16..469 2270 100 Plus
CG3746-RA 569 CG3746-RA 14..467 16..469 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 345..16 1650 100 Minus
2R 25286936 2R 22649220..22649348 469..341 630 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 12:54:36 has no hits.

BO12811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:32 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:05 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:39 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..471 8..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:22 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..471 8..475 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:22 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22649216..22649343 346..475 97 <- Minus
2R 22649408..22649745 8..345 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:39 Download gff for BO12811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536721..18536848 346..475 97 <- Minus
arm_2R 18536913..18537250 8..345 99   Minus

BO12811.3prime Sequence

486 bp (485 high quality bases) assembled on 2006-05-08

> BO12811.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGCGCTGGATTCCCACTTTGCCGC
CACACGAGCTGCAGTAAACGCCCTTGGTGGTCCACTCCCGATTGCAACCG
CACCAGGTGCACACGCAGCAGATCCAGAAGAGCGGAAAGATGCAGGATAG
CAGGCTGAGGCAGAAACTGGCGTCCTTGCAGCTGGCTGCTCTCATCACAG
CCGCCTCACTCCTCTCGCNGGCACAGTGGACACAACAGCTTGTAGGTGGA
GGGCCCAACGGCGTAGTACCGGATGGATGGTTCCTGTTGGGCGGCGGAAA
GTGGAGCAGCTGACTGCTGGGGGATCAGGGTCACCTTCTCCGACGCATGA
TCATCGATGAAGGGCACCAGACCATCCTCCAGGACCACATTGGCAATAAT
ATTCCTGGCACGTTCCTCCGCCGTTCCGGCGGGCACCAATCTCACCCGTA
ACCTCTCCACCTGCTGCTCCATGTCGACTGATAACT

BO12811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PA 456 CG3746-RA 1..253 472..220 1265 100 Minus
CG3746-PA 456 CG3746-RA 254..453 218..19 1000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..467 473..19 2250 99.8 Minus
CG3746-RA 569 CG3746-RA 14..467 473..19 2250 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 143..473 1605 99.7 Plus
2R 25286936 2R 22649220..22649348 19..147 630 99.2 Plus
Blast to na_te.dros performed on 2015-02-06 12:42:30 has no hits.

BO12811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:31 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 18..472 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:03 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-PA 1..456 18..472 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:03:08 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..471 13..481 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:17 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 6..471 13..481 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:17 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22649216..22649343 13..142 97 <- Plus
2R 22649408..22649745 143..481 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:03:08 Download gff for BO12811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536721..18536848 13..142 97 <- Plus
arm_2R 18536913..18537250 143..481 98   Plus

BO12811.complete Sequence

487 bp assembled on 2006-10-11

GenBank Submission: FJ632579

> BO12811.complete
GAAGTTATCAGTCGACATGGAGCAGCAGGTGGAGAGGTTACGGGTGAGAT
TGGTGCCCGCCGGAACGGCGGAGGAACGTGCCAGGAATATTATTGCCAAT
GTGGTCCTGGAGGATGGTCTGGTGCCCTTCATCGATGATCATGCGTCGGA
GAAGGTGACCCTGATCCCCCAGCAGTCAGCTGCTCCACTTTCCGCCGCCC
AACAGGAACCATCCATCCGGTACTACGCCGTTGGGCCCTCCACCTACAAG
CTGTTGTGTCCACTGTGCCGCGAGAGGAGTGAGGCGGCTGTGATGAGAGC
AGCCAGCTGCAAGGACGCCAGTTTCTGCCTCAGCCTGCTATCCTGCATCT
TTCCGCTCTTCTGGATCTGCTGCGTGTGCACCTGGTGCGGTTGCAATCGG
GAGTGGACCACCAAGGGCGTTTACTGCAGCTCGTGTGGCGGCAAAGTGGG
AATCCAGCGCAAGGCCAAGGCAAGCTTTCTAGACCAT

BO12811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 456 CG3746-PB 1..453 17..469 2265 100 Plus
CG3746-RA 456 CG3746-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-RB 692 CG3746-RB 14..467 16..469 2270 100 Plus
CG3746-RA 569 CG3746-RA 14..467 16..469 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22649408..22649737 345..16 1650 100 Minus
2R 25286936 2R 22649220..22649348 469..341 630 99.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:07 has no hits.

BO12811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:00 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:04 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..467 11..475 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:14 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 15..467 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:00 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 1..467 11..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:59 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
CG3746-RA 15..467 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:59 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22649216..22649343 346..471 98 <- Minus
2R 22649408..22649736 17..345 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:14 Download gff for BO12811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18536721..18536848 346..471 98 <- Minus
arm_2R 18536913..18537241 17..345 100   Minus

BO12811.pep Sequence

Translation from 16 to 487

> BO12811.pep
MEQQVERLRVRLVPAGTAEERARNIIANVVLEDGLVPFIDDHASEKVTLI
PQQSAAPLSAAQQEPSIRYYAVGPSTYKLLCPLCRERSEAAVMRAASCKD
ASFCLSLLSCIFPLFWICCVCTWCGCNREWTTKGVYCSSCGGKVGIQRKA
KASFLDH

BO12811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3746-PB 151 CG3746-PB 1..151 1..151 806 100 Plus
CG3746-PA 151 CG3746-PA 1..151 1..151 806 100 Plus
CG43326-PB 123 CG43326-PB 23..117 53..145 155 35.1 Plus
CG43326-PA 123 CG30217-PB 23..117 53..145 155 35.1 Plus