Clone BO12813 Report

Search the DGRC for BO12813

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG14798-RA
Protein status:BO12813.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO12813.3prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO12813.3prime
ATGGTCTAGAAAGCTTGCCATTAGCTGATCACCAAACCGGAATAAATTTT
CATTGTATATATATATATATATACATGTACACCAGCTGTGAGAAAAGGAA
ACTATGCGTATGCCATCAAGGTTCGTTTCGACCAAGCGCTCCTTGAACCA
CGACTGATCTCTGGCCAGGATTTCGTGGGTGAACTCGTATCGCGCTAGGG
CACTCTTAATATAGAGCGAGAGTTGCGGCAGGAGCAGATCCTCAGAGTGG
CTGACAAAGTCATGGGATCCTTGGTCACGCGCTTCAGTCGCTGAGCATGC
TAATGCCCGCAGTGGTGTTGCCGCAAAATCGAGTGTTGTCCACGTGCGGC
TTGATCGCGCCAGAGTCAGCCAAGTCCAGGATGTGCACGAAGGGCATGAC
CTGCTCACCGAAGGAAACTCACGAGACGTGATCCAGCGTGGCCTGGTTTT
GGGGAGTCCACTTTCGGCGTTCAACTTCGCGGTATCTGCCCACGTCATGT
CGACTGATAACT

BO12813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 483 CG14798-RA 1..480 498..19 2400 100 Minus
CG14798-PB 714 CG14798-RB 244..711 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..749 498..19 2400 100 Minus
a6-RC 2047 CG3771-RC 1968..2047 19..98 400 100 Plus
a6-RB 2218 CG3771-RB 2139..2218 19..98 400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693694 328..19 1550 100 Minus
X 23542271 X 1693162..1693323 490..329 810 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:06:01 has no hits.

BO12813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:34 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 15..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:09 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 15..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:54 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 15..504 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:24 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 15..504 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:24 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 329..494 98 -> Minus
X 1693385..1693697 15..328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:54 Download gff for BO12813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 329..494 98 -> Minus
arm_X 1587418..1587730 15..328 99   Minus

BO12813.5prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO12813.5prime
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGGCAA
GCTTTCTAGACC

BO12813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 483 CG14798-RA 1..480 17..496 2400 100 Plus
CG14798-PB 714 CG14798-RB 244..711 29..496 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..749 17..496 2400 100 Plus
a6-RC 2047 CG3771-RC 1968..2047 496..417 400 100 Minus
a6-RB 2218 CG3771-RB 2139..2218 496..417 400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693694 187..496 1550 100 Plus
X 23542271 X 1693162..1693323 25..186 810 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:25:21 has no hits.

BO12813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:35 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:10 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-PA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:20 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 11..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:34 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 267..752 11..500 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:34 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 21..186 98 -> Plus
X 1693385..1693697 187..500 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:20 Download gff for BO12813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 21..186 98 -> Plus
arm_X 1587418..1587730 187..500 99   Plus

BO12813.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ632580

> BO12813.complete
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGGCAA
GCTTTCTAGACCAT

BO12813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 483 CG14798-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-RA 898 CG14798-RA 270..749 17..496 2400 100 Plus
a6-RC 2047 CG3771-RC 1968..2047 496..417 400 100 Minus
a6-RB 2218 CG3771-RB 2139..2218 496..417 400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1693385..1693694 187..496 1550 100 Plus
X 23542271 X 1693162..1693323 25..186 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:12 has no hits.

BO12813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:59 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 1..483 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:00 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 255..740 11..500 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:29 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 270..749 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:00 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 255..740 11..500 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:13 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
CG14798-RA 270..749 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:13 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
X 1693158..1693323 21..186 98 -> Plus
X 1693385..1693694 187..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:29 Download gff for BO12813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1587191..1587356 21..186 98 -> Plus
arm_X 1587418..1587727 187..498 99   Plus

BO12813.pep Sequence

Translation from 16 to 514

> BO12813.pep
MTWADTAKLNAESGLPKTRPRWITSREFPSVSRSCPSCTSWTWLTLARSS
RTWTTLDFAATPLRALACSATEARDQGSHDFVSHSEDLLLPQLSLYIKSA
LARYEFTHEILARDQSWFKERLVETNLDGIRIVSFSHSWCTCIYIYIYNE
NLFRFGDQLMASFLDH

BO12813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14798-PA 160 CG14798-PA 1..160 1..160 858 100 Plus