Clone Sequence Records
BO12813.3prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO12813.3prime
ATGGTCTAGAAAGCTTGCCATTAGCTGATCACCAAACCGGAATAAATTTT
CATTGTATATATATATATATATACATGTACACCAGCTGTGAGAAAAGGAA
ACTATGCGTATGCCATCAAGGTTCGTTTCGACCAAGCGCTCCTTGAACCA
CGACTGATCTCTGGCCAGGATTTCGTGGGTGAACTCGTATCGCGCTAGGG
CACTCTTAATATAGAGCGAGAGTTGCGGCAGGAGCAGATCCTCAGAGTGG
CTGACAAAGTCATGGGATCCTTGGTCACGCGCTTCAGTCGCTGAGCATGC
TAATGCCCGCAGTGGTGTTGCCGCAAAATCGAGTGTTGTCCACGTGCGGC
TTGATCGCGCCAGAGTCAGCCAAGTCCAGGATGTGCACGAAGGGCATGAC
CTGCTCACCGAAGGAAACTCACGAGACGTGATCCAGCGTGGCCTGGTTTT
GGGGAGTCCACTTTCGGCGTTCAACTTCGCGGTATCTGCCCACGTCATGT
CGACTGATAACT
BO12813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 483 | CG14798-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
CG14798-PB | 714 | CG14798-RB | 244..711 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..749 | 498..19 | 2400 | 100 | Minus |
a6-RC | 2047 | CG3771-RC | 1968..2047 | 19..98 | 400 | 100 | Plus |
a6-RB | 2218 | CG3771-RB | 2139..2218 | 19..98 | 400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693694 | 328..19 | 1550 | 100 | Minus |
X | 23542271 | X | 1693162..1693323 | 490..329 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:06:01 has no hits.
BO12813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:34 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:09 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 15..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:55:54 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 15..504 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:01:24 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 15..504 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:01:24 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 329..494 | 98 | -> | Minus |
X | 1693385..1693697 | 15..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:55:54 Download gff for
BO12813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 329..494 | 98 | -> | Minus |
arm_X | 1587418..1587730 | 15..328 | 99 | | Minus |
BO12813.5prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO12813.5prime
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGGCAA
GCTTTCTAGACC
BO12813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 483 | CG14798-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG14798-PB | 714 | CG14798-RB | 244..711 | 29..496 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..749 | 17..496 | 2400 | 100 | Plus |
a6-RC | 2047 | CG3771-RC | 1968..2047 | 496..417 | 400 | 100 | Minus |
a6-RB | 2218 | CG3771-RB | 2139..2218 | 496..417 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693694 | 187..496 | 1550 | 100 | Plus |
X | 23542271 | X | 1693162..1693323 | 25..186 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:25:21 has no hits.
BO12813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:35 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:10 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-PA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:20 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 11..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:34 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 267..752 | 11..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:34 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 21..186 | 98 | -> | Plus |
X | 1693385..1693697 | 187..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:20 Download gff for
BO12813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 21..186 | 98 | -> | Plus |
arm_X | 1587418..1587730 | 187..500 | 99 | | Plus |
BO12813.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ632580
> BO12813.complete
GAAGTTATCAGTCGACATGACGTGGGCAGATACCGCGAAGTTGAACGCCG
AAAGTGGACTCCCCAAAACCAGGCCACGCTGGATCACGTCTCGTGAGTTT
CCTTCGGTGAGCAGGTCATGCCCTTCGTGCACATCCTGGACTTGGCTGAC
TCTGGCGCGATCAAGCCGCACGTGGACAACACTCGATTTTGCGGCAACAC
CACTGCGGGCATTAGCATGCTCAGCGACTGAAGCGCGTGACCAAGGATCC
CATGACTTTGTCAGCCACTCTGAGGATCTGCTCCTGCCGCAACTCTCGCT
CTATATTAAGAGTGCCCTAGCGCGATACGAGTTCACCCACGAAATCCTGG
CCAGAGATCAGTCGTGGTTCAAGGAGCGCTTGGTCGAAACGAACCTTGAT
GGCATACGCATAGTTTCCTTTTCTCACAGCTGGTGTACATGTATATATAT
ATATATATACAATGAAAATTTATTCCGGTTTGGTGATCAGCTAATGGCAA
GCTTTCTAGACCAT
BO12813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 483 | CG14798-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-RA | 898 | CG14798-RA | 270..749 | 17..496 | 2400 | 100 | Plus |
a6-RC | 2047 | CG3771-RC | 1968..2047 | 496..417 | 400 | 100 | Minus |
a6-RB | 2218 | CG3771-RB | 2139..2218 | 496..417 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1693385..1693694 | 187..496 | 1550 | 100 | Plus |
X | 23542271 | X | 1693162..1693323 | 25..186 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:12 has no hits.
BO12813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:59 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 1..483 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:51:00 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 255..740 | 11..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:29 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 270..749 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:35:00 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 255..740 | 11..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:13 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14798-RA | 270..749 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:13 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1693158..1693323 | 21..186 | 98 | -> | Plus |
X | 1693385..1693694 | 187..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:29 Download gff for
BO12813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1587191..1587356 | 21..186 | 98 | -> | Plus |
arm_X | 1587418..1587727 | 187..498 | 99 | | Plus |
BO12813.pep Sequence
Translation from 16 to 514
> BO12813.pep
MTWADTAKLNAESGLPKTRPRWITSREFPSVSRSCPSCTSWTWLTLARSS
RTWTTLDFAATPLRALACSATEARDQGSHDFVSHSEDLLLPQLSLYIKSA
LARYEFTHEILARDQSWFKERLVETNLDGIRIVSFSHSWCTCIYIYIYNE
NLFRFGDQLMASFLDH
BO12813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14798-PA | 160 | CG14798-PA | 1..160 | 1..160 | 858 | 100 | Plus |