Clone BO12814 Report

Search the DGRC for BO12814

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG6767-RA
Protein status:BO12814.pep: validated full length
Sequenced Size:1084

Clone Sequence Records

BO12814.3prime Sequence

791 bp (749 high quality bases) assembled on 2006-05-08

> BO12814.3prime
ATGGTCTAGAAAGCTTGCGTATGGAACATTTGAGAAGAGATACGAGACAC
TCTCGCCGTTGTGTGTCCTTCTGACGGCCTCGGCGAACATCATCGAGACA
TCAATGCACTGGATTTTGGGACAGTCCCGCATGTGTCCATCCTGCGGTAT
GGTATTGGTCACCACTACCGCCTCGAAACAGGCATTATTGATCCGCGAGA
TCGCCGGACCCGAGAAAATGCCATGCGTCAGAATAGCATACACCTTGGTG
GCTCCCGCCTCCACCAGGCGATCGGCGGCATGCACAATGGTGCCGCATGT
GTCGGCCATGTCATCGACCAGAATGGCAATCTTGTCCTTGACATCACCCA
CCAGTACCATAGAGGCCACTTCGTTGGCCTTCTTGCGCTCCTTGTGTATC
AGAGCGAACTCCACGTTCAGTCGATCGGCAATTGAGGTGACACGCTTGGC
ACCGCCAGCATCGGGCGACACAATGATCGAGTTCTTCCACTCGGGAATGT
TCTCCTTGATCCACTTGAGTACCGCCGGCTCGGCATAGAGATTATCAACT
GGTATATCAAAGAAGCCCTGAATCTGTGAGGCGTGCAGATCCATGGTGAT
GATGTGATCCGCTCCAGCAACGGACAGCATGTTGGCCACCAATTTGGCCG
AGATGGGCGCACGACTCTTGTCTTTTTTATCTTGGCGGGCATATGGAAAG
CAAGGAATCACAGCTGTAACACGAGAGGCTGAGGCAATTTTGCACGCATT
GATTATGATCAGCAGCTCCATCAAGTTATCGTTGATCTCGC

BO12814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PA 1053 CG6767-RA 278..1050 791..19 3840 99.8 Minus
CG6767-PB 1167 CG6767-RB 516..1164 667..19 3245 100 Minus
CG6767-PB 1167 CG6767-RB 323..447 791..667 600 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 285..1057 791..19 3850 99.9 Minus
CG6767-RA 2010 CG6767-RA 448..1220 791..19 3850 99.9 Minus
CG6767-RF 2106 CG6767-RF 532..1316 791..19 3720 98.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9684522..9684856 109..443 1675 100 Plus
3L 28110227 3L 9684921..9685048 443..570 640 100 Plus
3L 28110227 3L 9689265..9689389 667..791 610 99.2 Plus
3L 28110227 3L 9686364..9686465 567..668 510 100 Plus
3L 28110227 3L 9684369..9684461 19..111 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:09:31 has no hits.

BO12814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:36 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 278..1053 15..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:11 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 278..1053 15..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:41 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 448..1223 15..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:25:23 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 448..1223 15..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:25:23 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9684370..9684458 20..108 100 <- Plus
3L 9684522..9684855 109..442 100 <- Plus
3L 9684921..9685045 443..567 100 <- Plus
3L 9686365..9686463 568..666 100 <- Plus
3L 9689265..9689389 667..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:41 Download gff for BO12814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9677470..9677558 20..108 100 <- Plus
arm_3L 9677622..9677955 109..442 100 <- Plus
arm_3L 9678021..9678145 443..567 100 <- Plus
arm_3L 9679465..9679563 568..666 100 <- Plus
arm_3L 9682365..9682489 667..791 99   Plus

BO12814.5prime Sequence

891 bp (775 high quality bases) assembled on 2006-05-08

> BO12814.5prime
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCG

BO12814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PA 1053 CG6767-RA 1..875 17..891 4375 100 Plus
CG6767-PB 1167 CG6767-RB 516..989 418..891 2370 100 Plus
CG6767-PB 1167 CG6767-RB 46..447 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 8..882 17..891 4375 100 Plus
CG6767-RA 2010 CG6767-RA 171..1045 17..891 4375 100 Plus
CG6767-RF 2106 CG6767-RF 255..1141 17..891 4245 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9684607..9684856 891..642 1250 100 Minus
3L 28110227 3L 9694233..9694450 234..17 1090 100 Minus
3L 28110227 3L 9689265..9689449 418..234 925 100 Minus
3L 28110227 3L 9684921..9685048 642..515 640 100 Minus
3L 28110227 3L 9686364..9686465 518..417 510 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:25:03 has no hits.

BO12814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:37 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:13 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:16 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 166..1045 11..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:22:52 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 166..1045 11..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:22:52 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9684607..9684855 643..891 100 <- Minus
3L 9684921..9685045 518..642 100 <- Minus
3L 9686365..9686463 419..517 100 <- Minus
3L 9689265..9689448 235..418 100 <- Minus
3L 9694233..9694453 11..234 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:16 Download gff for BO12814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9677707..9677955 643..891 100 <- Minus
arm_3L 9678021..9678145 518..642 100 <- Minus
arm_3L 9679465..9679563 419..517 100 <- Minus
arm_3L 9682365..9682548 235..418 100 <- Minus
arm_3L 9687333..9687553 11..234 98   Minus

BO12814.complete Sequence

1084 bp assembled on 2006-10-11

GenBank Submission: FJ632581

> BO12814.complete
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCGGATCAATAA
TGCCTGTTTCGAGGCGGTAGTGGTGACCAATACCATACCGCAGGATGGAC
ACATGCGGGACTGTCCCAAAATCCAGTGCATTGATGTCTCGATGATGTTC
GCCGAGGCCGTCAGAAGGACACACAACGGCGAGAGTGTCTCGTATCTCTT
CTCAAATGTTCCATACGCAAGCTTTCTAGACCAT

BO12814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1053 CG6767-PH 1..1050 17..1066 5250 100 Plus
CG6767-RA 1053 CG6767-PA 1..1050 17..1066 5250 100 Plus
CG6767-RF 1110 CG6767-PF 46..1107 17..1066 5095 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-RH 1847 CG6767-RH 8..1057 17..1066 5250 100 Plus
CG6767-RA 2010 CG6767-RA 171..1220 17..1066 5250 100 Plus
CG6767-RF 2106 CG6767-RF 255..1316 17..1066 5095 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9684522..9684856 976..642 1675 100 Minus
3L 28110227 3L 9694233..9694450 234..17 1090 100 Minus
3L 28110227 3L 9689265..9689449 418..234 925 100 Minus
3L 28110227 3L 9684921..9685048 642..515 640 100 Minus
3L 28110227 3L 9686364..9686465 518..417 510 100 Minus
3L 28110227 3L 9684369..9684461 1066..974 465 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:00:56 has no hits.

BO12814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:18 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 1..1053 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:52 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 164..1213 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:29 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 171..1220 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:18 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 159..1216 11..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:05 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
CG6767-RA 171..1220 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:05 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9684367..9684458 977..1068 97 <- Minus
3L 9684522..9684855 643..976 100 <- Minus
3L 9684921..9685045 518..642 100 <- Minus
3L 9686365..9686463 419..517 100 <- Minus
3L 9689265..9689448 235..418 100 <- Minus
3L 9694233..9694450 17..234 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:29 Download gff for BO12814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9677467..9677558 977..1068 97 <- Minus
arm_3L 9677622..9677955 643..976 100 <- Minus
arm_3L 9678021..9678145 518..642 100 <- Minus
arm_3L 9679465..9679563 419..517 100 <- Minus
arm_3L 9682365..9682548 235..418 100 <- Minus
arm_3L 9687333..9687550 17..234 100   Minus

BO12814.pep Sequence

Translation from 16 to 1084

> BO12814.pep
MPVRSANPIRARSLIRDNLEKQAGCLNLIHSRMPNIKVFSGTSHPDLAQR
IVDRLGIDLGKVVTKKFSNLETCVEIGESVRGEDVYIVQSGSGEINDNLM
ELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSV
AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIV
SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDKIAIL
VDDMADTCGTIVHAADRLVEAGATKVYAILTHGIFSGPAISRINNACFEA
VVVTNTIPQDGHMRDCPKIQCIDVSMMFAEAVRRTHNGESVSYLFSNVPY
ASFLDH

BO12814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6767-PH 350 CG6767-PH 1..350 1..350 1784 100 Plus
CG6767-PA 350 CG6767-PA 1..350 1..350 1784 100 Plus
CG6767-PC 354 CG6767-PC 1..354 1..350 1769 98.9 Plus
CG6767-PJ 354 CG6767-PJ 1..354 1..350 1769 98.9 Plus
CG6767-PF 369 CG6767-PF 16..369 1..350 1769 98.9 Plus