Clone Sequence Records
BO12814.3prime Sequence
791 bp (749 high quality bases) assembled on 2006-05-08
> BO12814.3prime
ATGGTCTAGAAAGCTTGCGTATGGAACATTTGAGAAGAGATACGAGACAC
TCTCGCCGTTGTGTGTCCTTCTGACGGCCTCGGCGAACATCATCGAGACA
TCAATGCACTGGATTTTGGGACAGTCCCGCATGTGTCCATCCTGCGGTAT
GGTATTGGTCACCACTACCGCCTCGAAACAGGCATTATTGATCCGCGAGA
TCGCCGGACCCGAGAAAATGCCATGCGTCAGAATAGCATACACCTTGGTG
GCTCCCGCCTCCACCAGGCGATCGGCGGCATGCACAATGGTGCCGCATGT
GTCGGCCATGTCATCGACCAGAATGGCAATCTTGTCCTTGACATCACCCA
CCAGTACCATAGAGGCCACTTCGTTGGCCTTCTTGCGCTCCTTGTGTATC
AGAGCGAACTCCACGTTCAGTCGATCGGCAATTGAGGTGACACGCTTGGC
ACCGCCAGCATCGGGCGACACAATGATCGAGTTCTTCCACTCGGGAATGT
TCTCCTTGATCCACTTGAGTACCGCCGGCTCGGCATAGAGATTATCAACT
GGTATATCAAAGAAGCCCTGAATCTGTGAGGCGTGCAGATCCATGGTGAT
GATGTGATCCGCTCCAGCAACGGACAGCATGTTGGCCACCAATTTGGCCG
AGATGGGCGCACGACTCTTGTCTTTTTTATCTTGGCGGGCATATGGAAAG
CAAGGAATCACAGCTGTAACACGAGAGGCTGAGGCAATTTTGCACGCATT
GATTATGATCAGCAGCTCCATCAAGTTATCGTTGATCTCGC
BO12814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PA | 1053 | CG6767-RA | 278..1050 | 791..19 | 3840 | 99.8 | Minus |
CG6767-PB | 1167 | CG6767-RB | 516..1164 | 667..19 | 3245 | 100 | Minus |
CG6767-PB | 1167 | CG6767-RB | 323..447 | 791..667 | 600 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 285..1057 | 791..19 | 3850 | 99.9 | Minus |
CG6767-RA | 2010 | CG6767-RA | 448..1220 | 791..19 | 3850 | 99.9 | Minus |
CG6767-RF | 2106 | CG6767-RF | 532..1316 | 791..19 | 3720 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9684522..9684856 | 109..443 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 9684921..9685048 | 443..570 | 640 | 100 | Plus |
3L | 28110227 | 3L | 9689265..9689389 | 667..791 | 610 | 99.2 | Plus |
3L | 28110227 | 3L | 9686364..9686465 | 567..668 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9684369..9684461 | 19..111 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:09:31 has no hits.
BO12814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:36 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 278..1053 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:11 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 278..1053 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:41 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 448..1223 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:25:23 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 448..1223 | 15..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:25:23 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9684370..9684458 | 20..108 | 100 | <- | Plus |
3L | 9684522..9684855 | 109..442 | 100 | <- | Plus |
3L | 9684921..9685045 | 443..567 | 100 | <- | Plus |
3L | 9686365..9686463 | 568..666 | 100 | <- | Plus |
3L | 9689265..9689389 | 667..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:41 Download gff for
BO12814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9677470..9677558 | 20..108 | 100 | <- | Plus |
arm_3L | 9677622..9677955 | 109..442 | 100 | <- | Plus |
arm_3L | 9678021..9678145 | 443..567 | 100 | <- | Plus |
arm_3L | 9679465..9679563 | 568..666 | 100 | <- | Plus |
arm_3L | 9682365..9682489 | 667..791 | 99 | | Plus |
BO12814.5prime Sequence
891 bp (775 high quality bases) assembled on 2006-05-08
> BO12814.5prime
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCG
BO12814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PA | 1053 | CG6767-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
CG6767-PB | 1167 | CG6767-RB | 516..989 | 418..891 | 2370 | 100 | Plus |
CG6767-PB | 1167 | CG6767-RB | 46..447 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 8..882 | 17..891 | 4375 | 100 | Plus |
CG6767-RA | 2010 | CG6767-RA | 171..1045 | 17..891 | 4375 | 100 | Plus |
CG6767-RF | 2106 | CG6767-RF | 255..1141 | 17..891 | 4245 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9684607..9684856 | 891..642 | 1250 | 100 | Minus |
3L | 28110227 | 3L | 9694233..9694450 | 234..17 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 9689265..9689449 | 418..234 | 925 | 100 | Minus |
3L | 28110227 | 3L | 9684921..9685048 | 642..515 | 640 | 100 | Minus |
3L | 28110227 | 3L | 9686364..9686465 | 518..417 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:25:03 has no hits.
BO12814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:37 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:13 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:16 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 166..1045 | 11..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:22:52 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 166..1045 | 11..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:22:52 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9684607..9684855 | 643..891 | 100 | <- | Minus |
3L | 9684921..9685045 | 518..642 | 100 | <- | Minus |
3L | 9686365..9686463 | 419..517 | 100 | <- | Minus |
3L | 9689265..9689448 | 235..418 | 100 | <- | Minus |
3L | 9694233..9694453 | 11..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:16 Download gff for
BO12814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9677707..9677955 | 643..891 | 100 | <- | Minus |
arm_3L | 9678021..9678145 | 518..642 | 100 | <- | Minus |
arm_3L | 9679465..9679563 | 419..517 | 100 | <- | Minus |
arm_3L | 9682365..9682548 | 235..418 | 100 | <- | Minus |
arm_3L | 9687333..9687553 | 11..234 | 98 | | Minus |
BO12814.complete Sequence
1084 bp assembled on 2006-10-11
GenBank Submission: FJ632581
> BO12814.complete
GAAGTTATCAGTCGACATGCCAGTTCGCTCTGCTAATCCGATACGCGCTA
GAAGTTTGATCCGAGACAATTTGGAGAAACAGGCTGGTTGTCTAAATTTA
ATCCACTCCAGAATGCCGAACATCAAAGTGTTTTCGGGCACCTCGCATCC
GGATTTGGCCCAGCGGATAGTCGATCGCCTGGGAATCGATCTCGGCAAGG
TGGTTACGAAGAAGTTCAGCAACTTGGAGACCTGTGTGGAAATTGGGGAA
TCGGTGCGCGGCGAGGATGTGTACATCGTGCAATCGGGATCCGGCGAGAT
CAACGATAACTTGATGGAGCTGCTGATCATGATCAATGCGTGCAAAATTG
CCTCAGCCTCTCGTGTTACAGCTGTGATTCCTTGCTTTCCATATGCCCGC
CAAGATAAAAAAGACAAGAGTCGTGCGCCCATCTCGGCCAAATTGGTGGC
CAACATGCTGTCCGTTGCTGGAGCGGATCACATCATCACCATGGATCTGC
ACGCCTCACAGATTCAGGGCTTCTTTGATATACCAGTTGATAATCTCTAT
GCCGAGCCGGCGGTACTCAAGTGGATCAAGGAGAACATTCCCGAGTGGAA
GAACTCGATCATTGTGTCGCCCGATGCTGGCGGTGCCAAGCGTGTCACCT
CAATTGCCGATCGACTGAACGTGGAGTTCGCTCTGATACACAAGGAGCGC
AAGAAGGCCAACGAAGTGGCCTCTATGGTACTGGTGGGTGATGTCAAGGA
CAAGATTGCCATTCTGGTCGATGACATGGCCGACACATGCGGCACCATTG
TGCATGCCGCCGATCGCCTGGTGGAGGCGGGAGCCACCAAGGTGTATGCT
ATTCTGACGCATGGCATTTTCTCGGGTCCGGCGATCTCGCGGATCAATAA
TGCCTGTTTCGAGGCGGTAGTGGTGACCAATACCATACCGCAGGATGGAC
ACATGCGGGACTGTCCCAAAATCCAGTGCATTGATGTCTCGATGATGTTC
GCCGAGGCCGTCAGAAGGACACACAACGGCGAGAGTGTCTCGTATCTCTT
CTCAAATGTTCCATACGCAAGCTTTCTAGACCAT
BO12814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1053 | CG6767-PH | 1..1050 | 17..1066 | 5250 | 100 | Plus |
CG6767-RA | 1053 | CG6767-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
CG6767-RF | 1110 | CG6767-PF | 46..1107 | 17..1066 | 5095 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-RH | 1847 | CG6767-RH | 8..1057 | 17..1066 | 5250 | 100 | Plus |
CG6767-RA | 2010 | CG6767-RA | 171..1220 | 17..1066 | 5250 | 100 | Plus |
CG6767-RF | 2106 | CG6767-RF | 255..1316 | 17..1066 | 5095 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9684522..9684856 | 976..642 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 9694233..9694450 | 234..17 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 9689265..9689449 | 418..234 | 925 | 100 | Minus |
3L | 28110227 | 3L | 9684921..9685048 | 642..515 | 640 | 100 | Minus |
3L | 28110227 | 3L | 9686364..9686465 | 518..417 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9684369..9684461 | 1066..974 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:00:56 has no hits.
BO12814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:18 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 1..1053 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:52 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 164..1213 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:29 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 171..1220 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:18 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 159..1216 | 11..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:05 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6767-RA | 171..1220 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:05 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9684367..9684458 | 977..1068 | 97 | <- | Minus |
3L | 9684522..9684855 | 643..976 | 100 | <- | Minus |
3L | 9684921..9685045 | 518..642 | 100 | <- | Minus |
3L | 9686365..9686463 | 419..517 | 100 | <- | Minus |
3L | 9689265..9689448 | 235..418 | 100 | <- | Minus |
3L | 9694233..9694450 | 17..234 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:29 Download gff for
BO12814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9677467..9677558 | 977..1068 | 97 | <- | Minus |
arm_3L | 9677622..9677955 | 643..976 | 100 | <- | Minus |
arm_3L | 9678021..9678145 | 518..642 | 100 | <- | Minus |
arm_3L | 9679465..9679563 | 419..517 | 100 | <- | Minus |
arm_3L | 9682365..9682548 | 235..418 | 100 | <- | Minus |
arm_3L | 9687333..9687550 | 17..234 | 100 | | Minus |
BO12814.pep Sequence
Translation from 16 to 1084
> BO12814.pep
MPVRSANPIRARSLIRDNLEKQAGCLNLIHSRMPNIKVFSGTSHPDLAQR
IVDRLGIDLGKVVTKKFSNLETCVEIGESVRGEDVYIVQSGSGEINDNLM
ELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSV
AGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENIPEWKNSIIV
SPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDKIAIL
VDDMADTCGTIVHAADRLVEAGATKVYAILTHGIFSGPAISRINNACFEA
VVVTNTIPQDGHMRDCPKIQCIDVSMMFAEAVRRTHNGESVSYLFSNVPY
ASFLDH
BO12814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6767-PH | 350 | CG6767-PH | 1..350 | 1..350 | 1784 | 100 | Plus |
CG6767-PA | 350 | CG6767-PA | 1..350 | 1..350 | 1784 | 100 | Plus |
CG6767-PC | 354 | CG6767-PC | 1..354 | 1..350 | 1769 | 98.9 | Plus |
CG6767-PJ | 354 | CG6767-PJ | 1..354 | 1..350 | 1769 | 98.9 | Plus |
CG6767-PF | 369 | CG6767-PF | 16..369 | 1..350 | 1769 | 98.9 | Plus |