Clone Sequence Records
BO12817.3prime Sequence
695 bp (694 high quality bases) assembled on 2006-05-08
> BO12817.3prime
ATGGTCTAGAAAGCTTGCTGTTGTATTGGCGGGTAAAGCAGGCACAGTAT
CTCTGTCCACAGTAAAGGCTGATATTAGAACATTGACCACAGTGACTATA
AAAATGCCGCTAACTGTATAATTATTGATCCTGTTCGCCCGGCAGATATC
GTGACCGTTTTTGATGTTATACTGGCCATTCAATATAAGGCCCACGCCCA
CAGCAATCTGGAATATAATGCTGAGTGAGATGAACAGCAGACTGGGATAA
AAGTAAGGATGTTGTGAGCTCGTCTCCAGAACATAACGCAATTGATTTGC
ATTCGCGGAGAGAAGTGCCAGGTCCATCATTCCCTGAGCCAGGGTCTTCT
TGTGCTGATATGCATTCACATCGGGTATGGGTGTCTCCACGCCGTTGATC
GTCACAAAACCGGGTCCATTGTATCCCGGAAAGGAGAAACTGGGTCGTCT
TCCTCCATTGGGAACGTTTACATTCACATTGCCGCCGTTGCCTCCGTTGC
CTCCAACAGTTGAAAAAAGACCGTCATCCACGCCGGGATTATCATTGCCA
TCTTTAACAAAGGGACGATCGTCGTTGTCATCATCATCGGTTTCTGGAAC
TGCTCTGGGCACTCGAAGAGTATTACGTGTCCGTCCGTCGATTGCACCGC
CATAGCTTGTGTTTGCTGATATTTTCCAAAGTTTTATTATCTCCT
BO12817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6449-PA | 726 | ninA-RA | 85..723 | 657..19 | 3170 | 99.8 | Minus |
CG6449-PB | 738 | ninA-RB | 97..735 | 657..19 | 3170 | 99.8 | Minus |
CG6449-PC | 690 | ninA-RC | 153..687 | 553..19 | 2675 | 100 | Minus |
CG6449-PC | 690 | ninA-RC | 97..154 | 657..600 | 290 | 100 | Minus |
CG6449-PA | 726 | ninA-RA | 48..85 | 695..658 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 1134 | CG6449-RA | 281..956 | 695..19 | 3345 | 99.7 | Minus |
NijA-RB | 1146 | CG6449-RB | 312..968 | 676..19 | 3250 | 99.7 | Minus |
NijA-RD | 1086 | CG6449-RD | 374..908 | 553..19 | 2675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10695024..10695417 | 208..601 | 1955 | 99.7 | Plus |
3L | 28110227 | 3L | 10694538..10694733 | 19..214 | 965 | 99.5 | Plus |
3L | 28110227 | 3L | 10695629..10695705 | 600..677 | 340 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:44:06 has no hits.
BO12817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:42 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninA-PB | 48..738 | 18..695 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:20 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6449-PB | 48..738 | 18..695 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:56 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 281..962 | 10..695 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:04 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 281..962 | 10..695 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:04 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10694532..10694726 | 10..207 | 97 | <- | Plus |
3L | 10695024..10695415 | 208..599 | 99 | <- | Plus |
3L | 10695629..10695704 | 600..676 | 98 | <- | Plus |
3L | 10696579..10696597 | 677..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:56 Download gff for
BO12817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687632..10687826 | 10..207 | 97 | <- | Plus |
arm_3L | 10688124..10688515 | 208..599 | 99 | <- | Plus |
arm_3L | 10688729..10688804 | 600..676 | 98 | <- | Plus |
arm_3L | 10689679..10689697 | 677..695 | 100 | | Plus |
BO12817.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-05-08
> BO12817.5prime
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACAGCAAGCTTTCT
AGACC
BO12817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6449-PA | 726 | ninA-RA | 1..723 | 17..739 | 3590 | 99.8 | Plus |
CG6449-PB | 738 | ninA-RB | 79..735 | 83..739 | 3260 | 99.8 | Plus |
CG6449-PC | 690 | ninA-RC | 153..687 | 205..739 | 2675 | 100 | Plus |
CG6449-PC | 690 | ninA-RC | 79..154 | 83..158 | 380 | 100 | Plus |
CG6449-PB | 738 | ninA-RB | 1..67 | 17..83 | 335 | 100 | Plus |
CG6449-PC | 690 | ninA-RC | 1..67 | 17..83 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 1134 | CG6449-RA | 234..956 | 17..739 | 3600 | 99.9 | Plus |
NijA-RB | 1146 | CG6449-RB | 234..968 | 17..739 | 3470 | 98.2 | Plus |
NijA-RD | 1086 | CG6449-RD | 374..908 | 205..739 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10695024..10695417 | 550..157 | 1955 | 99.7 | Minus |
3L | 28110227 | 3L | 10694538..10694733 | 739..544 | 965 | 99.5 | Minus |
3L | 28110227 | 3L | 10695629..10695705 | 158..82 | 385 | 100 | Minus |
3L | 28110227 | 3L | 10696578..10696644 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:12:20 has no hits.
BO12817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:43 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninA-PA | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:21 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6449-PA | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:10 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 226..962 | 7..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:39 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 226..962 | 7..748 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:39 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10694532..10694726 | 551..748 | 97 | <- | Minus |
3L | 10695024..10695415 | 159..550 | 99 | <- | Minus |
3L | 10695629..10695704 | 83..158 | 100 | <- | Minus |
3L | 10696579..10696639 | 22..82 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:10 Download gff for
BO12817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687632..10687826 | 551..748 | 97 | <- | Minus |
arm_3L | 10688124..10688515 | 159..550 | 99 | <- | Minus |
arm_3L | 10688729..10688804 | 83..158 | 100 | <- | Minus |
arm_3L | 10689679..10689739 | 22..82 | 100 | <- | Minus |
BO12817.complete Sequence
757 bp assembled on 2007-10-17
GenBank Submission: FJ632582
> BO12817.complete
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACAGCAAGCTTTCT
AGACCAT
BO12817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 726 | CG6449-PA | 1..723 | 17..739 | 3600 | 99.9 | Plus |
NijA-RB | 738 | CG6449-PB | 1..735 | 17..739 | 3445 | 98.2 | Plus |
NijA-RD | 678 | CG6449-PD | 141..675 | 205..739 | 2675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 1134 | CG6449-RA | 234..956 | 17..739 | 3600 | 99.9 | Plus |
NijA-RB | 1146 | CG6449-RB | 234..968 | 17..739 | 3445 | 98.2 | Plus |
NijA-RD | 1086 | CG6449-RD | 374..908 | 205..739 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10695024..10695417 | 550..157 | 1955 | 99.7 | Minus |
3L | 28110227 | 3L | 10694538..10694733 | 739..544 | 965 | 99.5 | Minus |
3L | 28110227 | 3L | 10695629..10695705 | 158..82 | 385 | 100 | Minus |
3L | 28110227 | 3L | 10696578..10696644 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:21:11 has no hits.
BO12817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:54 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 1..726 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:29 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 223..959 | 7..748 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:33 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 234..956 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:13 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 231..953 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:55 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 234..956 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:55 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10694536..10694726 | 551..741 | 98 | <- | Minus |
3L | 10695024..10695415 | 159..550 | 99 | <- | Minus |
3L | 10695629..10695704 | 83..158 | 100 | <- | Minus |
3L | 10696579..10696644 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:33 Download gff for
BO12817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687636..10687826 | 551..741 | 98 | <- | Minus |
arm_3L | 10688124..10688515 | 159..550 | 99 | <- | Minus |
arm_3L | 10688729..10688804 | 83..158 | 100 | <- | Minus |
arm_3L | 10689679..10689744 | 17..82 | 100 | | Minus |
BO12817.pep Sequence
Translation from 16 to 757
> BO12817.pep
MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE
TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP
SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ
LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC
RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTTASFLDH
BO12817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-PA | 241 | CG6449-PA | 1..241 | 1..241 | 1266 | 100 | Plus |
NijA-PB | 245 | CG6449-PB | 1..245 | 1..241 | 1251 | 98.4 | Plus |
NijA-PD | 225 | CG6449-PD | 1..225 | 1..241 | 1149 | 93.4 | Plus |
NijA-PC | 229 | CG6449-PC | 1..229 | 1..241 | 1134 | 91.8 | Plus |
NijC-PD | 138 | CG14394-PD | 4..127 | 111..234 | 254 | 41.1 | Plus |