Clone BO12817 Report

Search the DGRC for BO12817

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptNijA-RA
Protein status:BO12817.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO12817.3prime Sequence

695 bp (694 high quality bases) assembled on 2006-05-08

> BO12817.3prime
ATGGTCTAGAAAGCTTGCTGTTGTATTGGCGGGTAAAGCAGGCACAGTAT
CTCTGTCCACAGTAAAGGCTGATATTAGAACATTGACCACAGTGACTATA
AAAATGCCGCTAACTGTATAATTATTGATCCTGTTCGCCCGGCAGATATC
GTGACCGTTTTTGATGTTATACTGGCCATTCAATATAAGGCCCACGCCCA
CAGCAATCTGGAATATAATGCTGAGTGAGATGAACAGCAGACTGGGATAA
AAGTAAGGATGTTGTGAGCTCGTCTCCAGAACATAACGCAATTGATTTGC
ATTCGCGGAGAGAAGTGCCAGGTCCATCATTCCCTGAGCCAGGGTCTTCT
TGTGCTGATATGCATTCACATCGGGTATGGGTGTCTCCACGCCGTTGATC
GTCACAAAACCGGGTCCATTGTATCCCGGAAAGGAGAAACTGGGTCGTCT
TCCTCCATTGGGAACGTTTACATTCACATTGCCGCCGTTGCCTCCGTTGC
CTCCAACAGTTGAAAAAAGACCGTCATCCACGCCGGGATTATCATTGCCA
TCTTTAACAAAGGGACGATCGTCGTTGTCATCATCATCGGTTTCTGGAAC
TGCTCTGGGCACTCGAAGAGTATTACGTGTCCGTCCGTCGATTGCACCGC
CATAGCTTGTGTTTGCTGATATTTTCCAAAGTTTTATTATCTCCT

BO12817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6449-PA 726 ninA-RA 85..723 657..19 3170 99.8 Minus
CG6449-PB 738 ninA-RB 97..735 657..19 3170 99.8 Minus
CG6449-PC 690 ninA-RC 153..687 553..19 2675 100 Minus
CG6449-PC 690 ninA-RC 97..154 657..600 290 100 Minus
CG6449-PA 726 ninA-RA 48..85 695..658 190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 1134 CG6449-RA 281..956 695..19 3345 99.7 Minus
NijA-RB 1146 CG6449-RB 312..968 676..19 3250 99.7 Minus
NijA-RD 1086 CG6449-RD 374..908 553..19 2675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10695024..10695417 208..601 1955 99.7 Plus
3L 28110227 3L 10694538..10694733 19..214 965 99.5 Plus
3L 28110227 3L 10695629..10695705 600..677 340 98.7 Plus
Blast to na_te.dros performed on 2015-02-01 04:44:06 has no hits.

BO12817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:42 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
ninA-PB 48..738 18..695 97   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:20 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6449-PB 48..738 18..695 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:56 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 281..962 10..695 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:04 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 281..962 10..695 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:04 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10694532..10694726 10..207 97 <- Plus
3L 10695024..10695415 208..599 99 <- Plus
3L 10695629..10695704 600..676 98 <- Plus
3L 10696579..10696597 677..695 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:56 Download gff for BO12817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687632..10687826 10..207 97 <- Plus
arm_3L 10688124..10688515 208..599 99 <- Plus
arm_3L 10688729..10688804 600..676 98 <- Plus
arm_3L 10689679..10689697 677..695 100   Plus

BO12817.5prime Sequence

755 bp (754 high quality bases) assembled on 2006-05-08

> BO12817.5prime
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACAGCAAGCTTTCT
AGACC

BO12817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6449-PA 726 ninA-RA 1..723 17..739 3590 99.8 Plus
CG6449-PB 738 ninA-RB 79..735 83..739 3260 99.8 Plus
CG6449-PC 690 ninA-RC 153..687 205..739 2675 100 Plus
CG6449-PC 690 ninA-RC 79..154 83..158 380 100 Plus
CG6449-PB 738 ninA-RB 1..67 17..83 335 100 Plus
CG6449-PC 690 ninA-RC 1..67 17..83 335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 1134 CG6449-RA 234..956 17..739 3600 99.9 Plus
NijA-RB 1146 CG6449-RB 234..968 17..739 3470 98.2 Plus
NijA-RD 1086 CG6449-RD 374..908 205..739 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10695024..10695417 550..157 1955 99.7 Minus
3L 28110227 3L 10694538..10694733 739..544 965 99.5 Minus
3L 28110227 3L 10695629..10695705 158..82 385 100 Minus
3L 28110227 3L 10696578..10696644 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:12:20 has no hits.

BO12817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:43 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
ninA-PA 1..726 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:21 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6449-PA 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:10 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 226..962 7..748 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:39 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 226..962 7..748 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:39 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10694532..10694726 551..748 97 <- Minus
3L 10695024..10695415 159..550 99 <- Minus
3L 10695629..10695704 83..158 100 <- Minus
3L 10696579..10696639 22..82 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:10 Download gff for BO12817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687632..10687826 551..748 97 <- Minus
arm_3L 10688124..10688515 159..550 99 <- Minus
arm_3L 10688729..10688804 83..158 100 <- Minus
arm_3L 10689679..10689739 22..82 100 <- Minus

BO12817.complete Sequence

757 bp assembled on 2007-10-17

GenBank Submission: FJ632582

> BO12817.complete
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACAGCAAGCTTTCT
AGACCAT

BO12817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 726 CG6449-PA 1..723 17..739 3600 99.9 Plus
NijA-RB 738 CG6449-PB 1..735 17..739 3445 98.2 Plus
NijA-RD 678 CG6449-PD 141..675 205..739 2675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 1134 CG6449-RA 234..956 17..739 3600 99.9 Plus
NijA-RB 1146 CG6449-RB 234..968 17..739 3445 98.2 Plus
NijA-RD 1086 CG6449-RD 374..908 205..739 2675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10695024..10695417 550..157 1955 99.7 Minus
3L 28110227 3L 10694538..10694733 739..544 965 99.5 Minus
3L 28110227 3L 10695629..10695705 158..82 385 100 Minus
3L 28110227 3L 10696578..10696644 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:21:11 has no hits.

BO12817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:54 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 1..726 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:29 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 223..959 7..748 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:33 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 234..956 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:13 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 231..953 17..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:55 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 234..956 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:55 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10694536..10694726 551..741 98 <- Minus
3L 10695024..10695415 159..550 99 <- Minus
3L 10695629..10695704 83..158 100 <- Minus
3L 10696579..10696644 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:33 Download gff for BO12817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687636..10687826 551..741 98 <- Minus
arm_3L 10688124..10688515 159..550 99 <- Minus
arm_3L 10688729..10688804 83..158 100 <- Minus
arm_3L 10689679..10689744 17..82 100   Minus

BO12817.pep Sequence

Translation from 16 to 757

> BO12817.pep
MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE
TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP
SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ
LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC
RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTTASFLDH

BO12817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-PA 241 CG6449-PA 1..241 1..241 1266 100 Plus
NijA-PB 245 CG6449-PB 1..245 1..241 1251 98.4 Plus
NijA-PD 225 CG6449-PD 1..225 1..241 1149 93.4 Plus
NijA-PC 229 CG6449-PC 1..229 1..241 1134 91.8 Plus
NijC-PD 138 CG14394-PD 4..127 111..234 254 41.1 Plus