Clone BO12818 Report

Search the DGRC for BO12818

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCpr11A-RA
Protein status:BO12818.pep: validated full length
Sequenced Size:844

Clone Sequence Records

BO12818.3prime Sequence

801 bp (734 high quality bases) assembled on 2006-05-08

> BO12818.3prime
ATGGTCTAGAAAGCTTGCTGCGGTGGGCAGATACAGACGAGATGGCGTCG
CCAGGGGCACCTGAGGTGGCTGATAATCGTAGCCATTGCCGTTGCCATTT
CCGTATCCGTTTCCAACTCCATTTCCATTTCCGTATGCGTTTCCAGCTCC
ATTTCCTTGTCCGTTTCCAACTCCATTTCCGTATCCGTTGCCAACTCCAT
TTCCGTATCCGTTTCCAACTCCATTACCGTAAGCATTGCCATTTCCATAG
GGAGACGTGTAGCTATAGTCATCGCCACTCTGTCCACTGCCCCTCAGAGG
ACCTTGCGATCCTTGATCGGAGTCCAGGGTCTGCTGCAGGAACTGGAAAC
GGTTCTTGTTGCCCAACAGGCTGCTGGGATCCACGGTCTGGCGCTGTCCG
GCAGAAGCCAAAGGCTGGGGTTCGGGAATGTCCAGATCCAGCTCGGTGAT
GGGATGATAGCCGAACTCATCGGCGGTGTAACGGGTCTTGTACCGCTTGC
CATCGGCGCCGGTGAACGAGTAGGAGCCGCTGACCACGAAGGTCTTGTCG
TCCTTCAGTTTGCCCACGCTGCTCACTTCGATGCCGTTCTGGGTCTTCAG
TTCCAGCTTGAATTTCTTGCCCGAGTTGTAGTTCTGGAGGGTTTCGGTCT
TGGCCTTCATGACATCGCCGCTAAAGTGCACCGCCGGCTTGTCGTCATCG
ATGTCCTCGGGCAGGGTGTAGATATCGCTGGGATTGTACTTGAAGAGGTC
CAGATTGCGATCTGTCAGATGCTTGACATCGGCAGCGGCCAGAGCAGCGA
A

BO12818.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2560-PA 813 CG2560-RA 28..810 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 140..922 801..19 3915 100 Minus
Cpr11A-RA 1326 CG2560-RA 693..792 200..95 235 82.1 Minus
Cpr11A-RA 1326 CG2560-RA 741..846 248..149 235 82.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489044 421..19 2015 100 Minus
X 23542271 X 12487842..12488041 801..602 1000 100 Minus
X 23542271 X 12488317..12488496 601..422 900 100 Minus
X 23542271 X 12488832..12488944 207..95 295 84.1 Minus
X 23542271 X 12488856..12488968 231..119 295 84.1 Minus
X 23542271 X 12488815..12488891 200..124 220 85.7 Minus
X 23542271 X 12488863..12488939 248..172 220 85.7 Minus
Blast to na_te.dros performed 2015-02-11 10:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 185..273 130 60.7 Plus

BO12818.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:44 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 30..813 15..799 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:22 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 30..813 15..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:50 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 140..926 14..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:22 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 140..926 14..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:22 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12487842..12488041 602..801 100 -> Minus
X 12488317..12488496 422..601 100 -> Minus
X 12488642..12489048 14..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:50 Download gff for BO12818.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381875..12382074 602..801 100 -> Minus
arm_X 12382350..12382529 422..601 100 -> Minus
arm_X 12382675..12383081 14..421 99   Minus

BO12818.5prime Sequence

842 bp (795 high quality bases) assembled on 2006-05-08

> BO12818.5prime
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCAGCAAGCTTTCTAGACC

BO12818.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2560-PA 813 CG2560-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 113..922 17..826 4050 100 Plus
Cpr11A-RA 1326 CG2560-RA 693..792 645..750 235 82.1 Plus
Cpr11A-RA 1326 CG2560-RA 741..846 597..696 235 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489044 424..826 2015 100 Plus
X 23542271 X 12487827..12488041 29..243 1075 100 Plus
X 23542271 X 12488317..12488496 244..423 900 100 Plus
X 23542271 X 12488832..12488944 638..750 295 84.1 Plus
X 23542271 X 12488856..12488968 614..726 295 84.1 Plus
X 23542271 X 12488815..12488891 645..721 220 85.7 Plus
X 23542271 X 12488863..12488939 597..673 220 85.7 Plus
Blast to na_te.dros performed 2015-02-13 08:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 660..572 130 60.7 Minus

BO12818.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:45 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:24 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2560-PA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:15 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 106..926 9..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:54 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 106..926 9..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:54 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12487827..12488041 29..243 100 -> Plus
X 12488317..12488496 244..423 100 -> Plus
X 12488642..12489048 424..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:15 Download gff for BO12818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381860..12382074 29..243 100 -> Plus
arm_X 12382350..12382529 244..423 100 -> Plus
arm_X 12382675..12383081 424..831 99   Plus

BO12818.complete Sequence

844 bp assembled on 2006-10-11

GenBank Submission: FJ632583

> BO12818.complete
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCAGCAAGCTTTCTAGACCAT

BO12818.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 813 CG2560-PA 1..810 17..826 4050 100 Plus
Cpr11A-RA 813 CG2560-PA 598..710 638..750 295 84.1 Plus
Cpr11A-RA 813 CG2560-PA 622..734 614..726 295 84.1 Plus
Cpr11A-RA 813 CG2560-PA 581..657 645..721 220 85.7 Plus
Cpr11A-RA 813 CG2560-PA 629..705 597..673 220 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-RA 1326 CG2560-RA 113..922 17..826 4050 100 Plus
Cpr11A-RA 1326 CG2560-RA 710..822 638..750 295 84.1 Plus
Cpr11A-RA 1326 CG2560-RA 734..846 614..726 295 84.1 Plus
Cpr11A-RA 1326 CG2560-RA 693..769 645..721 220 85.7 Plus
Cpr11A-RA 1326 CG2560-RA 741..817 597..673 220 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12488642..12489044 424..826 2015 100 Plus
X 23542271 X 12487827..12488041 29..243 1075 100 Plus
X 23542271 X 12488317..12488496 244..423 900 100 Plus
X 23542271 X 12488832..12488944 638..750 295 84.1 Plus
X 23542271 X 12488856..12488968 614..726 295 84.1 Plus
X 23542271 X 12488815..12488891 645..721 220 85.7 Plus
X 23542271 X 12488863..12488939 597..673 220 85.7 Plus
Blast to na_te.dros performed 2014-11-27 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4063..4151 660..572 130 60.7 Minus

BO12818.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:19 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 1..813 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:52 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 103..923 9..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:47 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..922 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:19 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 103..923 9..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:36 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr11A-RA 113..922 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:36 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
X 12487827..12488041 29..243 100 -> Plus
X 12488317..12488496 244..423 100 -> Plus
X 12488642..12489044 424..828 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:47 Download gff for BO12818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12381860..12382074 29..243 100 -> Plus
arm_X 12382350..12382529 244..423 100 -> Plus
arm_X 12382675..12383077 424..828 99   Plus

BO12818.pep Sequence

Translation from 16 to 844

> BO12818.pep
MKSFLILLGFAALAAADVKHLTDRNLDLFKYNPSDIYTLPEDIDDDKPAV
HFSGDVMKAKTETLQNYNSGKKFKLELKTQNGIEVSSVGKLKDDKTFVVS
GSYSFTGADGKRYKTRYTADEFGYHPITELDLDIPEPQPLASAGQRQTVD
PSSLLGNKNRFQFLQQTLDSDQGSQGPLRGSGQSGDDYSYTSPYGNGNAY
GNGVGNGYGNGVGNGYGNGVGNGQGNGAGNAYGNGNGVGNGYGNGNGNGY
DYQPPQVPLATPSRLYLPTAASFLDH

BO12818.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr11A-PA 270 CG2560-PA 1..270 1..270 1444 100 Plus
Cpr47Ef-PD 601 CG13214-PD 141..318 66..249 207 33.9 Plus
Cpr47Ef-PC 612 CG13214-PC 141..318 66..249 207 33.9 Plus
Cpr65Au-PB 106 CG18778-PB 22..100 53..126 148 38 Plus
Cpr65Au-PA 106 CG18778-PA 22..100 53..126 148 38 Plus