Clone Sequence Records
BO12818.3prime Sequence
801 bp (734 high quality bases) assembled on 2006-05-08
> BO12818.3prime
ATGGTCTAGAAAGCTTGCTGCGGTGGGCAGATACAGACGAGATGGCGTCG
CCAGGGGCACCTGAGGTGGCTGATAATCGTAGCCATTGCCGTTGCCATTT
CCGTATCCGTTTCCAACTCCATTTCCATTTCCGTATGCGTTTCCAGCTCC
ATTTCCTTGTCCGTTTCCAACTCCATTTCCGTATCCGTTGCCAACTCCAT
TTCCGTATCCGTTTCCAACTCCATTACCGTAAGCATTGCCATTTCCATAG
GGAGACGTGTAGCTATAGTCATCGCCACTCTGTCCACTGCCCCTCAGAGG
ACCTTGCGATCCTTGATCGGAGTCCAGGGTCTGCTGCAGGAACTGGAAAC
GGTTCTTGTTGCCCAACAGGCTGCTGGGATCCACGGTCTGGCGCTGTCCG
GCAGAAGCCAAAGGCTGGGGTTCGGGAATGTCCAGATCCAGCTCGGTGAT
GGGATGATAGCCGAACTCATCGGCGGTGTAACGGGTCTTGTACCGCTTGC
CATCGGCGCCGGTGAACGAGTAGGAGCCGCTGACCACGAAGGTCTTGTCG
TCCTTCAGTTTGCCCACGCTGCTCACTTCGATGCCGTTCTGGGTCTTCAG
TTCCAGCTTGAATTTCTTGCCCGAGTTGTAGTTCTGGAGGGTTTCGGTCT
TGGCCTTCATGACATCGCCGCTAAAGTGCACCGCCGGCTTGTCGTCATCG
ATGTCCTCGGGCAGGGTGTAGATATCGCTGGGATTGTACTTGAAGAGGTC
CAGATTGCGATCTGTCAGATGCTTGACATCGGCAGCGGCCAGAGCAGCGA
A
BO12818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2560-PA | 813 | CG2560-RA | 28..810 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 140..922 | 801..19 | 3915 | 100 | Minus |
Cpr11A-RA | 1326 | CG2560-RA | 693..792 | 200..95 | 235 | 82.1 | Minus |
Cpr11A-RA | 1326 | CG2560-RA | 741..846 | 248..149 | 235 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489044 | 421..19 | 2015 | 100 | Minus |
X | 23542271 | X | 12487842..12488041 | 801..602 | 1000 | 100 | Minus |
X | 23542271 | X | 12488317..12488496 | 601..422 | 900 | 100 | Minus |
X | 23542271 | X | 12488832..12488944 | 207..95 | 295 | 84.1 | Minus |
X | 23542271 | X | 12488856..12488968 | 231..119 | 295 | 84.1 | Minus |
X | 23542271 | X | 12488815..12488891 | 200..124 | 220 | 85.7 | Minus |
X | 23542271 | X | 12488863..12488939 | 248..172 | 220 | 85.7 | Minus |
Blast to na_te.dros performed 2015-02-11 10:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 185..273 | 130 | 60.7 | Plus |
BO12818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:44 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 30..813 | 15..799 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:22 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 30..813 | 15..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:50 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 140..926 | 14..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:22 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 140..926 | 14..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:22 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487842..12488041 | 602..801 | 100 | -> | Minus |
X | 12488317..12488496 | 422..601 | 100 | -> | Minus |
X | 12488642..12489048 | 14..421 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:50 Download gff for
BO12818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381875..12382074 | 602..801 | 100 | -> | Minus |
arm_X | 12382350..12382529 | 422..601 | 100 | -> | Minus |
arm_X | 12382675..12383081 | 14..421 | 99 | | Minus |
BO12818.5prime Sequence
842 bp (795 high quality bases) assembled on 2006-05-08
> BO12818.5prime
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCAGCAAGCTTTCTAGACC
BO12818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2560-PA | 813 | CG2560-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 113..922 | 17..826 | 4050 | 100 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 693..792 | 645..750 | 235 | 82.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 741..846 | 597..696 | 235 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489044 | 424..826 | 2015 | 100 | Plus |
X | 23542271 | X | 12487827..12488041 | 29..243 | 1075 | 100 | Plus |
X | 23542271 | X | 12488317..12488496 | 244..423 | 900 | 100 | Plus |
X | 23542271 | X | 12488832..12488944 | 638..750 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488856..12488968 | 614..726 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488815..12488891 | 645..721 | 220 | 85.7 | Plus |
X | 23542271 | X | 12488863..12488939 | 597..673 | 220 | 85.7 | Plus |
Blast to na_te.dros performed 2015-02-13 08:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 660..572 | 130 | 60.7 | Minus |
BO12818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:45 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:24 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2560-PA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:15 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 106..926 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:54 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 106..926 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:54 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487827..12488041 | 29..243 | 100 | -> | Plus |
X | 12488317..12488496 | 244..423 | 100 | -> | Plus |
X | 12488642..12489048 | 424..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:15 Download gff for
BO12818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381860..12382074 | 29..243 | 100 | -> | Plus |
arm_X | 12382350..12382529 | 244..423 | 100 | -> | Plus |
arm_X | 12382675..12383081 | 424..831 | 99 | | Plus |
BO12818.complete Sequence
844 bp assembled on 2006-10-11
GenBank Submission: FJ632583
> BO12818.complete
GAAGTTATCAGTCGACATGAAGAGTTTTCTGATCCTTCTGGGTTTCGCTG
CTCTGGCCGCTGCCGATGTCAAGCATCTGACAGATCGCAATCTGGACCTC
TTCAAGTACAATCCCAGCGATATCTACACCCTGCCCGAGGACATCGATGA
CGACAAGCCGGCGGTGCACTTTAGCGGCGATGTCATGAAGGCCAAGACCG
AAACCCTCCAGAACTACAACTCGGGCAAGAAATTCAAGCTGGAACTGAAG
ACCCAGAACGGCATCGAAGTGAGCAGCGTGGGCAAACTGAAGGACGACAA
GACCTTCGTGGTCAGCGGCTCCTACTCGTTCACCGGCGCCGATGGCAAGC
GGTACAAGACCCGTTACACCGCCGATGAGTTCGGCTATCATCCCATCACC
GAGCTGGATCTGGACATTCCCGAACCCCAGCCTTTGGCTTCTGCCGGACA
GCGCCAGACCGTGGATCCCAGCAGCCTGTTGGGCAACAAGAACCGTTTCC
AGTTCCTGCAGCAGACCCTGGACTCCGATCAAGGATCGCAAGGTCCTCTG
AGGGGCAGTGGACAGAGTGGCGATGACTATAGCTACACGTCTCCCTATGG
AAATGGCAATGCTTACGGTAATGGAGTTGGAAACGGATACGGAAATGGAG
TTGGCAACGGATACGGAAATGGAGTTGGAAACGGACAAGGAAATGGAGCT
GGAAACGCATACGGAAATGGAAATGGAGTTGGAAACGGATACGGAAATGG
CAACGGCAATGGCTACGATTATCAGCCACCTCAGGTGCCCCTGGCGACGC
CATCTCGTCTGTATCTGCCCACCGCAGCAAGCTTTCTAGACCAT
BO12818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 813 | CG2560-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 598..710 | 638..750 | 295 | 84.1 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 622..734 | 614..726 | 295 | 84.1 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 581..657 | 645..721 | 220 | 85.7 | Plus |
Cpr11A-RA | 813 | CG2560-PA | 629..705 | 597..673 | 220 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-RA | 1326 | CG2560-RA | 113..922 | 17..826 | 4050 | 100 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 710..822 | 638..750 | 295 | 84.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 734..846 | 614..726 | 295 | 84.1 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 693..769 | 645..721 | 220 | 85.7 | Plus |
Cpr11A-RA | 1326 | CG2560-RA | 741..817 | 597..673 | 220 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12488642..12489044 | 424..826 | 2015 | 100 | Plus |
X | 23542271 | X | 12487827..12488041 | 29..243 | 1075 | 100 | Plus |
X | 23542271 | X | 12488317..12488496 | 244..423 | 900 | 100 | Plus |
X | 23542271 | X | 12488832..12488944 | 638..750 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488856..12488968 | 614..726 | 295 | 84.1 | Plus |
X | 23542271 | X | 12488815..12488891 | 645..721 | 220 | 85.7 | Plus |
X | 23542271 | X | 12488863..12488939 | 597..673 | 220 | 85.7 | Plus |
Blast to na_te.dros performed 2014-11-27 16:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 660..572 | 130 | 60.7 | Minus |
BO12818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:19 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 1..813 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:52 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 103..923 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:47 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..922 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:19 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 103..923 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:36 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr11A-RA | 113..922 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:36 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12487827..12488041 | 29..243 | 100 | -> | Plus |
X | 12488317..12488496 | 244..423 | 100 | -> | Plus |
X | 12488642..12489044 | 424..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:47 Download gff for
BO12818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12381860..12382074 | 29..243 | 100 | -> | Plus |
arm_X | 12382350..12382529 | 244..423 | 100 | -> | Plus |
arm_X | 12382675..12383077 | 424..828 | 99 | | Plus |
BO12818.pep Sequence
Translation from 16 to 844
> BO12818.pep
MKSFLILLGFAALAAADVKHLTDRNLDLFKYNPSDIYTLPEDIDDDKPAV
HFSGDVMKAKTETLQNYNSGKKFKLELKTQNGIEVSSVGKLKDDKTFVVS
GSYSFTGADGKRYKTRYTADEFGYHPITELDLDIPEPQPLASAGQRQTVD
PSSLLGNKNRFQFLQQTLDSDQGSQGPLRGSGQSGDDYSYTSPYGNGNAY
GNGVGNGYGNGVGNGYGNGVGNGQGNGAGNAYGNGNGVGNGYGNGNGNGY
DYQPPQVPLATPSRLYLPTAASFLDH
BO12818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr11A-PA | 270 | CG2560-PA | 1..270 | 1..270 | 1444 | 100 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 141..318 | 66..249 | 207 | 33.9 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 141..318 | 66..249 | 207 | 33.9 | Plus |
Cpr65Au-PB | 106 | CG18778-PB | 22..100 | 53..126 | 148 | 38 | Plus |
Cpr65Au-PA | 106 | CG18778-PA | 22..100 | 53..126 | 148 | 38 | Plus |