Clone BO12819 Report

Search the DGRC for BO12819

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:19
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO12819.pep:
Sequenced Size:1171

Clone Sequence Records

BO12819.3prime Sequence

825 bp (702 high quality bases) assembled on 2006-05-08

> BO12819.3prime
ATGGTCTAGAAAGCTTGCATGTAATTGGAAACATTTAAACTTATCATAGT
TGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAGG
TCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATAT
TTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACAC
TGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTCC
AATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAAC
CTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCAC
TCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCTG
GGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGGG
TGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAGG
TTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAGA
CCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCGA
GCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATGG
ACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTTA
GCTACAAAGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGTG
GCCAAACCCGCTGAGCTTCAAGTTAGGGGCTGAGACTTCGTCTCTATAAA
TTCTCGACGACCAACGCGTCCACGT

BO12819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 428..1209 800..19 3860 99.7 Minus
CG17540-PC 1092 CG17540-RC 308..1089 800..19 3860 99.7 Minus
CG17540-PB 1116 CG17540-RB 332..1113 800..19 3860 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 429..1236 825..19 3970 99.5 Minus
Spf45-RC 1257 CG17540-RC 332..1139 825..19 3970 99.5 Minus
Spf45-RA 1397 CG17540-RA 472..1279 825..19 3970 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23067860 111..825 3485 99.4 Plus
2L 23513712 2L 23066992..23067085 19..112 470 100 Plus
Blast to na_te.dros performed on 2015-02-02 20:30:47 has no hits.

BO12819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:57 Download gff for BO12819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 306..1116 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:08 Download gff for BO12819.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 472..1279 19..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:14 Download gff for BO12819.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 472..1279 19..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:14 Download gff for BO12819.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23066992..23067083 19..110 100 <- Plus
2L 23067145..23067860 111..825 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:08 Download gff for BO12819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959724..22959815 19..110 100 <- Plus
arm_2L 22959877..22960592 111..825 99   Plus

BO12819.5prime Sequence

794 bp (758 high quality bases) assembled on 2006-05-08

> BO12819.5prime
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTC

BO12819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 73..850 17..794 3890 100 Plus
CG17540-PC 1092 CG17540-RC 1..730 65..794 3650 100 Plus
CG17540-PB 1116 CG17540-RB 65..754 105..794 3450 100 Plus
CG17540-PB 1116 CG17540-RB 20..64 17..61 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1397 CG17540-RA 143..920 17..794 3890 100 Plus
Spf45-RC 1257 CG17540-RC 48..780 62..794 3665 100 Plus
Spf45-RB 1354 CG17540-RB 188..877 105..794 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067412..23068144 794..62 3665 100 Minus
2L 23513712 2L 23068200..23068244 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:25:09 has no hits.

BO12819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:58 Download gff for BO12819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PA 73..850 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:19 Download gff for BO12819.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 143..920 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:23:54 Download gff for BO12819.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 143..920 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:23:54 Download gff for BO12819.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23067412..23068144 62..794 100 <- Minus
2L 23068200..23068244 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:19 Download gff for BO12819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22960144..22960876 62..794 100 <- Minus
arm_2L 22960932..22960976 17..61 100   Minus

BO12819.complete Sequence

1171 bp assembled on 2006-10-11

GenBank Submission: FJ632584

> BO12819.complete
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGA
TGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACGGAG
ATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACC
CGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAATGCAACA
CCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTTCGGAACT
GTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAG
TGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTC
AAGTGCGAGCGGGGTTTTACAACTATGATAAGTTTAAATGTTTCCAATTA
CATGCAAGCTTTCTAGACCAT

BO12819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1212 CG17540-PA 73..1209 17..1153 5685 100 Plus
Spf45-RC 1092 CG17540-PC 1..1089 65..1153 5445 100 Plus
Spf45-RB 1116 CG17540-PB 65..1113 105..1153 5245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1397 CG17540-RA 143..1279 17..1153 5685 100 Plus
Spf45-RC 1257 CG17540-RC 48..1139 62..1153 5460 100 Plus
Spf45-RB 1354 CG17540-RB 188..1236 105..1153 5245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068144 1061..62 5000 100 Minus
2L 23513712 2L 23066992..23067085 1153..1060 470 100 Minus
2L 23513712 2L 23068200..23068244 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:57:33 has no hits.

BO12819.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:57 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 73..1212 17..1154 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:27 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 204..1340 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:09 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 148..1279 22..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:58 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 204..1340 17..1153 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:03 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 148..1279 22..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:03 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23066990..23067083 1062..1155 97 <- Minus
2L 23067145..23068144 62..1061 100 <- Minus
2L 23068200..23068239 22..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:09 Download gff for BO12819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959722..22959815 1062..1155 97 <- Minus
arm_2L 22959877..22960876 62..1061 100 <- Minus
arm_2L 22960932..22960971 22..61 100   Minus

BO12819.pep Sequence

Translation from 16 to 1171

> BO12819.pep
MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG
KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE
DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL
VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG
QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT
SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE
ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV
VDLNGRFFGGRQVRAGFYNYDKFKCFQLHASFLDH

BO12819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PA 403 CG17540-PA 25..403 1..379 1960 100 Plus
Spf45-PC 363 CG17540-PC 1..363 17..379 1885 100 Plus
Spf45-PB 371 CG17540-PB 6..371 14..379 1819 95.9 Plus
pUf68-PJ 545 CG12085-PJ 444..538 284..373 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 284..373 192 47.9 Plus