Clone Sequence Records
BO12819.3prime Sequence
825 bp (702 high quality bases) assembled on 2006-05-08
> BO12819.3prime
ATGGTCTAGAAAGCTTGCATGTAATTGGAAACATTTAAACTTATCATAGT
TGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAGG
TCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATAT
TTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACAC
TGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTCC
AATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAAC
CTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCAC
TCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCTG
GGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGGG
TGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAGG
TTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAGA
CCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCGA
GCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATGG
ACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTTA
GCTACAAAGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGTG
GCCAAACCCGCTGAGCTTCAAGTTAGGGGCTGAGACTTCGTCTCTATAAA
TTCTCGACGACCAACGCGTCCACGT
BO12819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 428..1209 | 800..19 | 3860 | 99.7 | Minus |
CG17540-PC | 1092 | CG17540-RC | 308..1089 | 800..19 | 3860 | 99.7 | Minus |
CG17540-PB | 1116 | CG17540-RB | 332..1113 | 800..19 | 3860 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 429..1236 | 825..19 | 3970 | 99.5 | Minus |
Spf45-RC | 1257 | CG17540-RC | 332..1139 | 825..19 | 3970 | 99.5 | Minus |
Spf45-RA | 1397 | CG17540-RA | 472..1279 | 825..19 | 3970 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23067860 | 111..825 | 3485 | 99.4 | Plus |
2L | 23513712 | 2L | 23066992..23067085 | 19..112 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:30:47 has no hits.
BO12819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:57 Download gff for
BO12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 306..1116 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:08 Download gff for
BO12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 472..1279 | 19..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:14 Download gff for
BO12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 472..1279 | 19..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:14 Download gff for
BO12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066992..23067083 | 19..110 | 100 | <- | Plus |
2L | 23067145..23067860 | 111..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:08 Download gff for
BO12819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959724..22959815 | 19..110 | 100 | <- | Plus |
arm_2L | 22959877..22960592 | 111..825 | 99 | | Plus |
BO12819.5prime Sequence
794 bp (758 high quality bases) assembled on 2006-05-08
> BO12819.5prime
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTC
BO12819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 73..850 | 17..794 | 3890 | 100 | Plus |
CG17540-PC | 1092 | CG17540-RC | 1..730 | 65..794 | 3650 | 100 | Plus |
CG17540-PB | 1116 | CG17540-RB | 65..754 | 105..794 | 3450 | 100 | Plus |
CG17540-PB | 1116 | CG17540-RB | 20..64 | 17..61 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1397 | CG17540-RA | 143..920 | 17..794 | 3890 | 100 | Plus |
Spf45-RC | 1257 | CG17540-RC | 48..780 | 62..794 | 3665 | 100 | Plus |
Spf45-RB | 1354 | CG17540-RB | 188..877 | 105..794 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067412..23068144 | 794..62 | 3665 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068244 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:25:09 has no hits.
BO12819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:58 Download gff for
BO12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PA | 73..850 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:19 Download gff for
BO12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..920 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:23:54 Download gff for
BO12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..920 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:23:54 Download gff for
BO12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067412..23068144 | 62..794 | 100 | <- | Minus |
2L | 23068200..23068244 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:19 Download gff for
BO12819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22960144..22960876 | 62..794 | 100 | <- | Minus |
arm_2L | 22960932..22960976 | 17..61 | 100 | | Minus |
BO12819.complete Sequence
1171 bp assembled on 2006-10-11
GenBank Submission: FJ632584
> BO12819.complete
GAAGTTATCAGTCGACATGTTACAGACCCAGCTGGCAGTAAAAATGGCTG
TCAAAAAACCACTTATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTT
GCAGATCCAGAAGTTACATGTTTTGCTCCAATTACTACAGTTGTATCCAA
ACCATTAATAAGTGGTAAAGCCCTTCCATCCATACTGGAAAGGATAAACA
GGGGGGACTGGGACGTTGCCGATGAATACGATCCTCAAAGGCCAAATGAA
TATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGG
CGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAAAGATCGTAAACGTG
GACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAAC
CTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGATGATGACATGTACTT
GCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCC
CTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTTGTGAAGCCACTAAT
ACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATA
TGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCA
TAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTGGACGGATCATACAC
GAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGG
CTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGA
TGGTAGACACGGCGGCTGAGAGTGGTGACATCGGATACAGCATTACGGAG
ATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACC
CGGGGACGTTGACGAAGAATTGGAACCCGAGGTAAAAGACGAATGCAACA
CCAAGTACGGGGAAGTGAACAGTGTAATCATTCACGAATCGTTCGGAACT
GTGCCAGAAGATGCAGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAG
TGCAATTAAAGCTGTAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTC
AAGTGCGAGCGGGGTTTTACAACTATGATAAGTTTAAATGTTTCCAATTA
CATGCAAGCTTTCTAGACCAT
BO12819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1212 | CG17540-PA | 73..1209 | 17..1153 | 5685 | 100 | Plus |
Spf45-RC | 1092 | CG17540-PC | 1..1089 | 65..1153 | 5445 | 100 | Plus |
Spf45-RB | 1116 | CG17540-PB | 65..1113 | 105..1153 | 5245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1397 | CG17540-RA | 143..1279 | 17..1153 | 5685 | 100 | Plus |
Spf45-RC | 1257 | CG17540-RC | 48..1139 | 62..1153 | 5460 | 100 | Plus |
Spf45-RB | 1354 | CG17540-RB | 188..1236 | 105..1153 | 5245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23068144 | 1061..62 | 5000 | 100 | Minus |
2L | 23513712 | 2L | 23066992..23067085 | 1153..1060 | 470 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068244 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:33 has no hits.
BO12819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:57 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 73..1212 | 17..1154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:27 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 204..1340 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:09 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 148..1279 | 22..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:58 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 204..1340 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:03 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 148..1279 | 22..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:03 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066990..23067083 | 1062..1155 | 97 | <- | Minus |
2L | 23067145..23068144 | 62..1061 | 100 | <- | Minus |
2L | 23068200..23068239 | 22..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:09 Download gff for
BO12819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959722..22959815 | 1062..1155 | 97 | <- | Minus |
arm_2L | 22959877..22960876 | 62..1061 | 100 | <- | Minus |
arm_2L | 22960932..22960971 | 22..61 | 100 | | Minus |
BO12819.pep Sequence
Translation from 16 to 1171
> BO12819.pep
MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG
KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE
DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL
VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG
QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT
SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE
ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV
VDLNGRFFGGRQVRAGFYNYDKFKCFQLHASFLDH
BO12819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-PA | 403 | CG17540-PA | 25..403 | 1..379 | 1960 | 100 | Plus |
Spf45-PC | 363 | CG17540-PC | 1..363 | 17..379 | 1885 | 100 | Plus |
Spf45-PB | 371 | CG17540-PB | 6..371 | 14..379 | 1819 | 95.9 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 284..373 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 284..373 | 192 | 47.9 | Plus |