Clone Sequence Records
BO12821.3prime Sequence
801 bp (779 high quality bases) assembled on 2006-05-08
> BO12821.3prime
ATGGTCTAGAAAGCTTGCAAGCGAATCCGATTTTCCCTGTTGTTCAAATG
GCAATGTTGCGTATATGGTTGTTACTTCTTGGCCAGGTGTCTGGAGGTAC
TCTTGGGAATGCTCAAGTTTCTGCGGATGATGCTTCGGCTCATCGATGTC
CTCGCCTTCCGAAGAGCTGCGTATCGTATTGTATTGTGAGTTGCGGCTGC
GCAGCATACGCAGGAAACTGCCCACGGCAAAAATAGTACGGCGGTGCCGA
TGAAATATTCCCTGGTATAAGGCCTCTCGTAATGTCTTCCTGTCCTCTAC
ATCCACCGATGACGTTATAGACGTTTGATGCGGCAATCGTGCAGCTATAG
GTGACTTGGGCGATTTAAGTGAGTATTCATCGAGGTTCTTGCCGCCAAGA
TCTAGTTTGAGCACCTTCTTTGTTAACTCTTGTGTGGCCGCCTCCATGTT
ACTGGTCCTGTCTATCTTGATATCCACGTTTCGCTGGCTGACGGCACTCT
TGGTGGGAATGCCCTTTATTGACCGCGTCGATTCCGTCGTTGTCGTTGCT
TCGGCCGCATCAATCATGTTGTTGTTTGTGATGTTGATTTTTAACTTTTT
TTGAAAAAAGTTCTTTTGAGTCTCTCTTAACGCTTGCTGGCCAGAAACAC
TGTCATCTAGCGCTTTTCGTTCCGCCCTTGTTGTTGTGGTTTCCTTATCA
GTATAATTGCTTTTAACCACAGAGTCTGGTGTAGAACCTACAAATGATGG
AGAAACAGCGAAACCACTACTTTCGTCGATTCCGCTTCTGCTACTGTTTC
T
BO12821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:52:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17159-RB | 3819 | CG17159-RB | 1657..2439 | 801..19 | 3915 | 100 | Minus |
CG17162-RH | 4590 | CG17162-RH | 1657..2439 | 801..19 | 3915 | 100 | Minus |
CG17162-RF | 3431 | CG17162-RF | 1269..2051 | 801..19 | 3915 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23088715..23089174 | 342..801 | 2300 | 100 | Plus |
X | 23542271 | X | 23087304..23087507 | 139..342 | 1020 | 100 | Plus |
X | 23542271 | X | 23087111..23087232 | 19..140 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:45:55 has no hits.
BO12821.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:15 Download gff for
BO12821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RE | 1513..2298 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:16 Download gff for
BO12821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RF | 1269..2054 | 15..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:16 Download gff for
BO12821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23087304..23087506 | 139..341 | 100 | <- | Plus |
X | 23087107..23087230 | 15..138 | 98 | <- | Plus |
X | 23088715..23089174 | 342..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:15 Download gff for
BO12821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 65925..66048 | 15..138 | 98 | <- | Plus |
XHet | 66122..66324 | 139..341 | 100 | <- | Plus |
XHet | 67533..67992 | 342..801 | 100 | | Plus |
BO12821.5prime Sequence
851 bp (767 high quality bases) assembled on 2006-05-08
> BO12821.5prime
GAAGTTATCAGTCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTG
AAAGAAACAGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTT
TCTCCATCATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTA
TACTGATAAGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATG
ACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTT
CAAAAAAAGTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGC
CGAAGCAACGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCA
CCAAGAGTGCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACC
AGTAACATGGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACT
AGATCTTGGCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGT
CACCTATAGCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTG
GATGTAGAGGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATT
TCATCGGCACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGC
TGCGCAGCCGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGC
GAGGACATCGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCA
AGAGTACCTCCAGACACCTGGCCAAGAAGTAACAACCATATACGCACCAT
TGCCATTTGAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTTCTAGA
C
BO12821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:52:12 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17159-RB | 3819 | CG17159-RB | 1621..2439 | 17..835 | 4080 | 99.9 | Plus |
CG17162-RH | 4590 | CG17162-RH | 1621..2439 | 17..835 | 4080 | 99.9 | Plus |
CG17162-RF | 3431 | CG17162-RF | 1233..2051 | 17..835 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23088715..23089210 | 512..17 | 2480 | 100 | Minus |
X | 23542271 | X | 23087304..23087507 | 715..512 | 1020 | 100 | Minus |
X | 23542271 | X | 23087111..23087232 | 835..714 | 595 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:43:47 has no hits.
BO12821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:57 Download gff for
BO12821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RE | 1477..2298 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:20 Download gff for
BO12821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RF | 1233..2054 | 17..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:20 Download gff for
BO12821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23087107..23087230 | 716..839 | 97 | <- | Minus |
X | 23087304..23087506 | 513..715 | 100 | <- | Minus |
X | 23088715..23089210 | 17..512 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:57 Download gff for
BO12821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 65925..66048 | 716..839 | 97 | <- | Minus |
XHet | 66122..66324 | 513..715 | 100 | <- | Minus |
XHet | 67533..68028 | 17..512 | 100 | | Minus |
BO12821.complete Sequence
853 bp assembled on 2006-10-11
GenBank Submission: FJ632585
> BO12821.complete
GAAGTTATCAGTCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTG
AAAGAAACAGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTT
TCTCCATCATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTA
TACTGATAAGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATG
ACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTT
CAAAAAAAGTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGC
CGAAGCAACGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCA
CCAAGAGTGCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACC
AGTAACATGGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACT
AGATCTTGGCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGT
CACCTATAGCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTG
GATGTAGAGGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATT
TCATCGGCACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGC
TGCGCAGCCGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGC
GAGGACATCGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCA
AGAGTACCTCCAGACACCTGGCCAAGAAGTAACAACCATATACGCAACAT
TGCCATTTGAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTCTAGAC
CAT
BO12821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17162-RH | 822 | CG17162-PH | 1..819 | 17..835 | 4095 | 100 | Plus |
CG17162-RF | 822 | CG17162-PF | 1..819 | 17..835 | 4095 | 100 | Plus |
CG17162-RC | 822 | CG17162-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17159-RB | 3819 | CG17159-RB | 1621..2439 | 17..835 | 4095 | 100 | Plus |
CG17162-RH | 4590 | CG17162-RH | 1621..2439 | 17..835 | 4095 | 100 | Plus |
CG17162-RF | 3431 | CG17162-RF | 1233..2051 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 23088715..23089210 | 512..17 | 2480 | 100 | Minus |
X | 23542271 | X | 23087304..23087507 | 715..512 | 1020 | 100 | Minus |
X | 23542271 | X | 23087111..23087232 | 835..714 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:55:15 has no hits.
BO12821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:59 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RE | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:29 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RE | 1412..2233 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:09 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RE | 1477..2295 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:59 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RD | 1296..2117 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:36 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17162-RF | 1233..2051 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:36 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 23088715..23089210 | 17..512 | 100 | | Minus |
X | 23087109..23087230 | 716..837 | 98 | <- | Minus |
X | 23087304..23087506 | 513..715 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:09 Download gff for
BO12821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
XHet | 65927..66048 | 716..837 | 98 | <- | Minus |
XHet | 66122..66324 | 513..715 | 100 | <- | Minus |
XHet | 67533..68028 | 17..512 | 100 | | Minus |
BO12821.pep Sequence
Translation from 16 to 853
> BO12821.pep
MVVAVVAADVVERNSSRSGIDESSGFAVSPSFVGSTPDSVVKSNYTDKET
TTTRAERKALDDSVSGQQALRETQKNFFQKKLKINITNNNMIDAAEATTT
TESTRSIKGIPTKSAVSQRNVDIKIDRTSNMEAATQELTKKVLKLDLGGK
NLDEYSLKSPKSPIAARLPHQTSITSSVDVEDRKTLREALYQGIFHRHRR
TIFAVGSFLRMLRSRNSQYNTIRSSSEGEDIDEPKHHPQKLEHSQEYLQT
PGQEVTTIYATLPFEQQGKSDSLASFLDH
BO12821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17162-PH | 273 | CG17162-PH | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PF | 273 | CG17162-PF | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PC | 273 | CG17162-PC | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PE | 273 | CG17162-PE | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PD | 273 | CG17162-PD | 1..273 | 1..273 | 1362 | 100 | Plus |