Clone BO12821 Report

Search the DGRC for BO12821

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG17162-RB
Protein status:BO12821.pep:
Sequenced Size:853

Clone Sequence Records

BO12821.3prime Sequence

801 bp (779 high quality bases) assembled on 2006-05-08

> BO12821.3prime
ATGGTCTAGAAAGCTTGCAAGCGAATCCGATTTTCCCTGTTGTTCAAATG
GCAATGTTGCGTATATGGTTGTTACTTCTTGGCCAGGTGTCTGGAGGTAC
TCTTGGGAATGCTCAAGTTTCTGCGGATGATGCTTCGGCTCATCGATGTC
CTCGCCTTCCGAAGAGCTGCGTATCGTATTGTATTGTGAGTTGCGGCTGC
GCAGCATACGCAGGAAACTGCCCACGGCAAAAATAGTACGGCGGTGCCGA
TGAAATATTCCCTGGTATAAGGCCTCTCGTAATGTCTTCCTGTCCTCTAC
ATCCACCGATGACGTTATAGACGTTTGATGCGGCAATCGTGCAGCTATAG
GTGACTTGGGCGATTTAAGTGAGTATTCATCGAGGTTCTTGCCGCCAAGA
TCTAGTTTGAGCACCTTCTTTGTTAACTCTTGTGTGGCCGCCTCCATGTT
ACTGGTCCTGTCTATCTTGATATCCACGTTTCGCTGGCTGACGGCACTCT
TGGTGGGAATGCCCTTTATTGACCGCGTCGATTCCGTCGTTGTCGTTGCT
TCGGCCGCATCAATCATGTTGTTGTTTGTGATGTTGATTTTTAACTTTTT
TTGAAAAAAGTTCTTTTGAGTCTCTCTTAACGCTTGCTGGCCAGAAACAC
TGTCATCTAGCGCTTTTCGTTCCGCCCTTGTTGTTGTGGTTTCCTTATCA
GTATAATTGCTTTTAACCACAGAGTCTGGTGTAGAACCTACAAATGATGG
AGAAACAGCGAAACCACTACTTTCGTCGATTCCGCTTCTGCTACTGTTTC
T

BO12821.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:52:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17159-RB 3819 CG17159-RB 1657..2439 801..19 3915 100 Minus
CG17162-RH 4590 CG17162-RH 1657..2439 801..19 3915 100 Minus
CG17162-RF 3431 CG17162-RF 1269..2051 801..19 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23088715..23089174 342..801 2300 100 Plus
X 23542271 X 23087304..23087507 139..342 1020 100 Plus
X 23542271 X 23087111..23087232 19..140 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:45:55 has no hits.

BO12821.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:15 Download gff for BO12821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17162-RE 1513..2298 15..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:16 Download gff for BO12821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1269..2054 15..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:16 Download gff for BO12821.3prime
Subject Subject Range Query Range Percent Splice Strand
X 23087304..23087506 139..341 100 <- Plus
X 23087107..23087230 15..138 98 <- Plus
X 23088715..23089174 342..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:15 Download gff for BO12821.3prime
Subject Subject Range Query Range Percent Splice Strand
XHet 65925..66048 15..138 98 <- Plus
XHet 66122..66324 139..341 100 <- Plus
XHet 67533..67992 342..801 100   Plus

BO12821.5prime Sequence

851 bp (767 high quality bases) assembled on 2006-05-08

> BO12821.5prime
GAAGTTATCAGTCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTG
AAAGAAACAGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTT
TCTCCATCATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTA
TACTGATAAGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATG
ACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTT
CAAAAAAAGTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGC
CGAAGCAACGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCA
CCAAGAGTGCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACC
AGTAACATGGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACT
AGATCTTGGCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGT
CACCTATAGCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTG
GATGTAGAGGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATT
TCATCGGCACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGC
TGCGCAGCCGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGC
GAGGACATCGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCA
AGAGTACCTCCAGACACCTGGCCAAGAAGTAACAACCATATACGCACCAT
TGCCATTTGAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTTCTAGA
C

BO12821.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:52:12 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17159-RB 3819 CG17159-RB 1621..2439 17..835 4080 99.9 Plus
CG17162-RH 4590 CG17162-RH 1621..2439 17..835 4080 99.9 Plus
CG17162-RF 3431 CG17162-RF 1233..2051 17..835 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23088715..23089210 512..17 2480 100 Minus
X 23542271 X 23087304..23087507 715..512 1020 100 Minus
X 23542271 X 23087111..23087232 835..714 595 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 20:43:47 has no hits.

BO12821.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:57 Download gff for BO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17162-RE 1477..2298 17..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:20 Download gff for BO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1233..2054 17..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:20 Download gff for BO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
X 23087107..23087230 716..839 97 <- Minus
X 23087304..23087506 513..715 100 <- Minus
X 23088715..23089210 17..512 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:57 Download gff for BO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
XHet 65925..66048 716..839 97 <- Minus
XHet 66122..66324 513..715 100 <- Minus
XHet 67533..68028 17..512 100   Minus

BO12821.complete Sequence

853 bp assembled on 2006-10-11

GenBank Submission: FJ632585

> BO12821.complete
GAAGTTATCAGTCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTG
AAAGAAACAGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTT
TCTCCATCATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTA
TACTGATAAGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATG
ACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTT
CAAAAAAAGTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGC
CGAAGCAACGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCA
CCAAGAGTGCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACC
AGTAACATGGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACT
AGATCTTGGCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGT
CACCTATAGCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTG
GATGTAGAGGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATT
TCATCGGCACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGC
TGCGCAGCCGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGC
GAGGACATCGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCA
AGAGTACCTCCAGACACCTGGCCAAGAAGTAACAACCATATACGCAACAT
TGCCATTTGAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTCTAGAC
CAT

BO12821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17162-RH 822 CG17162-PH 1..819 17..835 4095 100 Plus
CG17162-RF 822 CG17162-PF 1..819 17..835 4095 100 Plus
CG17162-RC 822 CG17162-PC 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17159-RB 3819 CG17159-RB 1621..2439 17..835 4095 100 Plus
CG17162-RH 4590 CG17162-RH 1621..2439 17..835 4095 100 Plus
CG17162-RF 3431 CG17162-RF 1233..2051 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23088715..23089210 512..17 2480 100 Minus
X 23542271 X 23087304..23087507 715..512 1020 100 Minus
X 23542271 X 23087111..23087232 835..714 610 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:55:15 has no hits.

BO12821.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:59 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RE 1..822 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:58:29 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RE 1412..2233 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:09 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RE 1477..2295 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:59 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RD 1296..2117 17..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:36 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1233..2051 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:36 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
X 23088715..23089210 17..512 100   Minus
X 23087109..23087230 716..837 98 <- Minus
X 23087304..23087506 513..715 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:09 Download gff for BO12821.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 65927..66048 716..837 98 <- Minus
XHet 66122..66324 513..715 100 <- Minus
XHet 67533..68028 17..512 100   Minus

BO12821.pep Sequence

Translation from 16 to 853

> BO12821.pep
MVVAVVAADVVERNSSRSGIDESSGFAVSPSFVGSTPDSVVKSNYTDKET
TTTRAERKALDDSVSGQQALRETQKNFFQKKLKINITNNNMIDAAEATTT
TESTRSIKGIPTKSAVSQRNVDIKIDRTSNMEAATQELTKKVLKLDLGGK
NLDEYSLKSPKSPIAARLPHQTSITSSVDVEDRKTLREALYQGIFHRHRR
TIFAVGSFLRMLRSRNSQYNTIRSSSEGEDIDEPKHHPQKLEHSQEYLQT
PGQEVTTIYATLPFEQQGKSDSLASFLDH

BO12821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17162-PH 273 CG17162-PH 1..273 1..273 1362 100 Plus
CG17162-PF 273 CG17162-PF 1..273 1..273 1362 100 Plus
CG17162-PC 273 CG17162-PC 1..273 1..273 1362 100 Plus
CG17162-PE 273 CG17162-PE 1..273 1..273 1362 100 Plus
CG17162-PD 273 CG17162-PD 1..273 1..273 1362 100 Plus