Clone Sequence Records
BO12822.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO12822.3prime
ATGGTCTAGAAAGCTTGCTTTGTCCTTCTTGCTGTCCTTGGGCTTCTCGG
CAGCCGGTTTGTTGGGATAAATAGCGAACATGGAGAGCTGAATGCCGCCC
AGGACCAGCAGCAAAAGGTTCTGCAGCACCATCACAGTATTCTTGATGGA
GATGGCATACAGCGTCCAGGAAAATGCCACCAGATTACCGGCAAAGATAA
TCGGGAACGGCATTCCCTCGGTGCTCTTCTTCTCAATGATTTTCGGCAGA
TGCAGCAGGGGAGAGCCCACCATCCAAACCAGGATGCCGGTGATCAGCAT
TCCCAGGCGGAACTCAATCTTGGCGGGATCCTCGAAGTTGGCATACGCGG
TGATGGCCAATAGGAACACCGAGGAATAGCCAATCTGCTTCCAGATCTTG
CTCCTGCTGGCGCTCGAGGCGTAGTAGTAAAATCCGAAGAGGAAGACGAA
GTTTATCACCAGGCCGATTAAATTCGTATTGATCATGGCAGCATCATTCA
TAATGTTGGCCAGCTTCAAGCTGAGAACGGTCAGCACCACTCCGAAGAGA
AATGGGCCCACCGGGTAGACGTCGCTGCTACCCTTCTTGCGGATGTCGTT
CATCAGAACCACTCCGGACAGAAATTGCAGGGTAGTTATGGTGCCGGCTA
CCTTGGCGATTAGTTCGCTGTGTGGCGCCAAGAGATCCCCCAGTGCCTCC
ATGTCGACTGATAACT
BO12822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 687 | CG7272-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..837 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 532..127 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 15501090..15501261 | 703..532 | 860 | 100 | Minus |
3L | 28110227 | 3L | 15503307..15503415 | 127..19 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:13:20 has no hits.
BO12822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:51 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:28 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 15..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:27 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..842 | 11..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:44 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..842 | 11..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:44 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15501090..15501260 | 533..703 | 100 | -> | Minus |
3L | 15502837..15503242 | 127..532 | 100 | -> | Minus |
3L | 15503308..15503420 | 11..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:27 Download gff for
BO12822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15494190..15494360 | 533..703 | 100 | -> | Minus |
arm_3L | 15495937..15496342 | 127..532 | 100 | -> | Minus |
arm_3L | 15496408..15496520 | 11..126 | 96 | | Minus |
BO12822.5prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO12822.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
GCAAGCTTTCTAGACC
BO12822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 687 | CG7272-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..837 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 187..592 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 15501090..15501261 | 16..187 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15503307..15503415 | 592..700 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:01:34 has no hits.
BO12822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:52 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:29 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-PA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:15 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..842 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:03 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 153..842 | 16..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:03 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15501093..15501260 | 19..186 | 100 | -> | Plus |
3L | 15502837..15503242 | 187..592 | 100 | -> | Plus |
3L | 15503308..15503420 | 593..708 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:15 Download gff for
BO12822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15496408..15496520 | 593..708 | 96 | | Plus |
arm_3L | 15495937..15496342 | 187..592 | 100 | -> | Plus |
arm_3L | 15494193..15494360 | 19..186 | 100 | -> | Plus |
BO12822.complete Sequence
718 bp assembled on 2006-10-11
GenBank Submission: FJ632586
> BO12822.complete
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
GCAAGCTTTCTAGACCAT
BO12822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 687 | CG7272-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-RA | 1191 | CG7272-RA | 153..837 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15502837..15503242 | 187..592 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 15501090..15501261 | 16..187 | 860 | 100 | Plus |
3L | 28110227 | 3L | 15503307..15503415 | 592..700 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:28:46 has no hits.
BO12822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:59 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 1..687 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:02 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 151..840 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:06 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 154..837 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:59 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 151..840 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:29 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7272-RA | 154..837 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:29 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15501091..15501260 | 17..186 | 100 | -> | Plus |
3L | 15502837..15503242 | 187..592 | 100 | -> | Plus |
3L | 15503308..15503415 | 593..702 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:06 Download gff for
BO12822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15494191..15494360 | 17..186 | 100 | -> | Plus |
arm_3L | 15495937..15496342 | 187..592 | 100 | -> | Plus |
arm_3L | 15496408..15496515 | 593..702 | 98 | | Plus |
BO12822.pep Sequence
Translation from 16 to 718
> BO12822.pep
MEALGDLLAPHSELIAKVAGTITTLQFLSGVVLMNDIRKKGSSDVYPVGP
FLFGVVLTVLSLKLANIMNDAAMINTNLIGLVINFVFLFGFYYYASSASR
SKIWKQIGYSSVFLLAITAYANFEDPAKIEFRLGMLITGILVWMVGSPLL
HLPKIIEKKSTEGMPFPIIFAGNLVAFSWTLYAISIKNTVMVLQNLLLLV
LGGIQLSMFAIYPNKPAAEKPKDSKKDKASFLDH
BO12822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7272-PA | 228 | CG7272-PA | 1..228 | 1..228 | 1144 | 100 | Plus |
slv-PC | 226 | CG8717-PC | 6..208 | 11..213 | 212 | 27.2 | Plus |
slv-PB | 226 | CG8717-PB | 6..208 | 11..213 | 212 | 27.2 | Plus |
slv-PA | 226 | CG8717-PA | 6..208 | 11..213 | 212 | 27.2 | Plus |