Clone BO12822 Report

Search the DGRC for BO12822

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:128
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7272-RA
Protein status:BO12822.pep: validated full length
Sequenced Size:718

Clone Sequence Records

BO12822.3prime Sequence

716 bp (715 high quality bases) assembled on 2006-05-08

> BO12822.3prime
ATGGTCTAGAAAGCTTGCTTTGTCCTTCTTGCTGTCCTTGGGCTTCTCGG
CAGCCGGTTTGTTGGGATAAATAGCGAACATGGAGAGCTGAATGCCGCCC
AGGACCAGCAGCAAAAGGTTCTGCAGCACCATCACAGTATTCTTGATGGA
GATGGCATACAGCGTCCAGGAAAATGCCACCAGATTACCGGCAAAGATAA
TCGGGAACGGCATTCCCTCGGTGCTCTTCTTCTCAATGATTTTCGGCAGA
TGCAGCAGGGGAGAGCCCACCATCCAAACCAGGATGCCGGTGATCAGCAT
TCCCAGGCGGAACTCAATCTTGGCGGGATCCTCGAAGTTGGCATACGCGG
TGATGGCCAATAGGAACACCGAGGAATAGCCAATCTGCTTCCAGATCTTG
CTCCTGCTGGCGCTCGAGGCGTAGTAGTAAAATCCGAAGAGGAAGACGAA
GTTTATCACCAGGCCGATTAAATTCGTATTGATCATGGCAGCATCATTCA
TAATGTTGGCCAGCTTCAAGCTGAGAACGGTCAGCACCACTCCGAAGAGA
AATGGGCCCACCGGGTAGACGTCGCTGCTACCCTTCTTGCGGATGTCGTT
CATCAGAACCACTCCGGACAGAAATTGCAGGGTAGTTATGGTGCCGGCTA
CCTTGGCGATTAGTTCGCTGTGTGGCGCCAAGAGATCCCCCAGTGCCTCC
ATGTCGACTGATAACT

BO12822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 687 CG7272-RA 1..684 702..19 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..837 703..19 3425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 532..127 2030 100 Minus
3L 28110227 3L 15501090..15501261 703..532 860 100 Minus
3L 28110227 3L 15503307..15503415 127..19 545 100 Minus
Blast to na_te.dros performed on 2015-01-31 12:13:20 has no hits.

BO12822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:51 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 15..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:28 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 15..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:27 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..842 11..703 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:44 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..842 11..703 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:44 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15501090..15501260 533..703 100 -> Minus
3L 15502837..15503242 127..532 100 -> Minus
3L 15503308..15503420 11..126 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:27 Download gff for BO12822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15494190..15494360 533..703 100 -> Minus
arm_3L 15495937..15496342 127..532 100 -> Minus
arm_3L 15496408..15496520 11..126 96   Minus

BO12822.5prime Sequence

716 bp (715 high quality bases) assembled on 2006-05-08

> BO12822.5prime
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
GCAAGCTTTCTAGACC

BO12822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 687 CG7272-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..837 16..700 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 187..592 2030 100 Plus
3L 28110227 3L 15501090..15501261 16..187 860 100 Plus
3L 28110227 3L 15503307..15503415 592..700 545 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:01:34 has no hits.

BO12822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:52 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 17..704 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:29 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-PA 1..687 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:15 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..842 16..708 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:45:03 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 153..842 16..708 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:45:03 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15501093..15501260 19..186 100 -> Plus
3L 15502837..15503242 187..592 100 -> Plus
3L 15503308..15503420 593..708 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:15 Download gff for BO12822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15496408..15496520 593..708 96   Plus
arm_3L 15495937..15496342 187..592 100 -> Plus
arm_3L 15494193..15494360 19..186 100 -> Plus

BO12822.complete Sequence

718 bp assembled on 2006-10-11

GenBank Submission: FJ632586

> BO12822.complete
GAAGTTATCAGTCGACATGGAGGCACTGGGGGATCTCTTGGCGCCACACA
GCGAACTAATCGCCAAGGTAGCCGGCACCATAACTACCCTGCAATTTCTG
TCCGGAGTGGTTCTGATGAACGACATCCGCAAGAAGGGTAGCAGCGACGT
CTACCCGGTGGGCCCATTTCTCTTCGGAGTGGTGCTGACCGTTCTCAGCT
TGAAGCTGGCCAACATTATGAATGATGCTGCCATGATCAATACGAATTTA
ATCGGCCTGGTGATAAACTTCGTCTTCCTCTTCGGATTTTACTACTACGC
CTCGAGCGCCAGCAGGAGCAAGATCTGGAAGCAGATTGGCTATTCCTCGG
TGTTCCTATTGGCCATCACCGCGTATGCCAACTTCGAGGATCCCGCCAAG
ATTGAGTTCCGCCTGGGAATGCTGATCACCGGCATCCTGGTTTGGATGGT
GGGCTCTCCCCTGCTGCATCTGCCGAAAATCATTGAGAAGAAGAGCACCG
AGGGAATGCCGTTCCCGATTATCTTTGCCGGTAATCTGGTGGCATTTTCC
TGGACGCTGTATGCCATCTCCATCAAGAATACTGTGATGGTGCTGCAGAA
CCTTTTGCTGCTGGTCCTGGGCGGCATTCAGCTCTCCATGTTCGCTATTT
ATCCCAACAAACCGGCTGCCGAGAAGCCCAAGGACAGCAAGAAGGACAAA
GCAAGCTTTCTAGACCAT

BO12822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 687 CG7272-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-RA 1191 CG7272-RA 153..837 16..700 3425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15502837..15503242 187..592 2030 100 Plus
3L 28110227 3L 15501090..15501261 16..187 860 100 Plus
3L 28110227 3L 15503307..15503415 592..700 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:28:46 has no hits.

BO12822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:59 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 1..687 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:02 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 151..840 16..708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:06 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 154..837 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:59 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 151..840 16..708 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:29 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
CG7272-RA 154..837 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:29 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15501091..15501260 17..186 100 -> Plus
3L 15502837..15503242 187..592 100 -> Plus
3L 15503308..15503415 593..702 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:06 Download gff for BO12822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15494191..15494360 17..186 100 -> Plus
arm_3L 15495937..15496342 187..592 100 -> Plus
arm_3L 15496408..15496515 593..702 98   Plus

BO12822.pep Sequence

Translation from 16 to 718

> BO12822.pep
MEALGDLLAPHSELIAKVAGTITTLQFLSGVVLMNDIRKKGSSDVYPVGP
FLFGVVLTVLSLKLANIMNDAAMINTNLIGLVINFVFLFGFYYYASSASR
SKIWKQIGYSSVFLLAITAYANFEDPAKIEFRLGMLITGILVWMVGSPLL
HLPKIIEKKSTEGMPFPIIFAGNLVAFSWTLYAISIKNTVMVLQNLLLLV
LGGIQLSMFAIYPNKPAAEKPKDSKKDKASFLDH

BO12822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7272-PA 228 CG7272-PA 1..228 1..228 1144 100 Plus
slv-PC 226 CG8717-PC 6..208 11..213 212 27.2 Plus
slv-PB 226 CG8717-PB 6..208 11..213 212 27.2 Plus
slv-PA 226 CG8717-PA 6..208 11..213 212 27.2 Plus