Clone Sequence Records
BO12823.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO12823.3prime
ATGGTCTAGAAAGCTTGCGGCGTGCAGAAGTCCATCGCTTTGCCCAACCA
ATTTCCCAAGGAGAGTCTGGTAGAGTGGCGACTCCGTGGGTATTCCCTCG
CTCTGCAGAAACAGCAATGTTTCTCTGGCACACATGGCAAAACCCAGTGC
CTCCGCCTGACTCCTTTGGGCTGGCGTCGGTGGCGCAAACTGGGCCGCCA
CCTCGGCATCCTCGTCACTTTCCTCAACATCCTCCGCTTCAGCTCCGGCA
GCCGCATAGCCATCTCGATCGTTTAGATCCTGCTCAAAGGCATCCAGCTC
CGCTTGCAGCTCCATTATTTTTTGCAGCGCTTCCAGAAGGATTCGATTGG
GGGCATCTGGCGGGTTGGGGCAATTCTGCCCTGGCTCTTCTGCTGGTGGA
GTTAGAGGACGATGGCGTTTCTCCGGAACCGCTTCAGTCGGTTGCTGCTC
CTGTTGCTGTTCCTGCGGCTGGACACGTTGCTCCTGCGCCTGCTGCTGCT
CCTCCTGGCTGGCTCGCTTGCGCTTCATGATCAGTTTGCCCGACATGTCG
ACTGATAACT
BO12823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6520-PA | 531 | CG6520-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..834 | 547..19 | 2645 | 100 | Minus |
| insb-RA | 854 | CG6520-RA | 101..629 | 547..19 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475439..17475967 | 19..547 | 2645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:24:50 has no hits.
BO12823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:53 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:30 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:41 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 101..636 | 13..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:59 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 101..636 | 13..547 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:59 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475432..17475967 | 13..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:41 Download gff for
BO12823.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362937..13363472 | 13..547 | 99 | | Plus |
BO12823.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO12823.5prime
GAAGTTATCAGTCGACATGTCGGGCAAACTGATCATGAAGCGCAAGCGAG
CCAGCCAGGAGGAGCAGCAGCAGGCGCAGGAGCAACGTGTCCAGCCGCAG
GAACAGCAACAGGAGCAGCAACCGACTGAAGCGGTTCCGGAGAAACGCCA
TCGTCCTCTAACTCCACCAGCAGAAGAGCCAGGGCAGAATTGCCCCAACC
CGCCAGATGCCCCCAATCGAATCCTTCTGGAAGCGCTGCAAAAAATAATG
GAGCTGCAAGCGGAGCTGGATGCCTTTGAGCAGGATCTAAACGATCGAGA
TGGCTATGCGGCTGCCGGAGCTGAAGCGGAGGATGTTGAGGAAAGTGACG
AGGATGCCGAGGTGGCGGCCCAGTTTGCGCCACCGACGCCAGCCCAAAGG
AGTCAGGCGGAGGCACTGGGTTTTGCCATGTGTGCCAGAGAAACATTGCT
GTTTCTGCAGAGCGAGGGAATACCCACGGAGTCGCCACTCTACCAGACTC
TCCTTGGGAAATTGGTTGGGCAAAGCGATGGACTTCTGCACGCCGCAAGC
TTTCTAGACC
BO12823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6520-PA | 531 | CG6520-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..834 | 16..544 | 2645 | 100 | Plus |
| insb-RA | 854 | CG6520-RA | 101..629 | 16..544 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475439..17475967 | 544..16 | 2645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:01:47 has no hits.
BO12823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:46:54 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:26:32 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:37 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 101..636 | 16..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:33 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 101..636 | 16..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:33 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475432..17475967 | 16..550 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:37 Download gff for
BO12823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362937..13363472 | 16..550 | 99 | | Minus |
BO12823.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ632587
> BO12823.complete
GAAGTTATCAGTCGACATGTCGGGCAAACTGATCATGAAGCGCAAGCGAG
CCAGCCAGGAGGAGCAGCAGCAGGCGCAGGAGCAACGTGTCCAGCCGCAG
GAACAGCAACAGGAGCAGCAACCGACTGAAGCGGTTCCGGAGAAACGCCA
TCGTCCTCTAACTCCACCAGCAGAAGAGCCAGGGCAGAATTGCCCCAACC
CGCCAGATGCCCCCAATCGAATCCTTCTGGAAGCGCTGCAAAAAATAATG
GAGCTGCAAGCGGAGCTGGATGCCTTTGAGCAGGATCTAAACGATCGAGA
TGGCTATGCGGCTGCCGGAGCTGAAGCGGAGGATGTTGAGGAAAGTGACG
AGGATGCCGAGGTGGCGGCCCAGTTTGCGCCACCGACGCCAGCCCAAAGG
AGTCAGGCGGAGGCACTGGGTTTTGCCATGTGTGCCAGAGAAACATTGCT
GTTTCTGCAGAGCGAGGGAATACCCACGGAGTCGCCACTCTACCAGACTC
TCCTTGGGAAATTGGTTGGGCAAAGCGATGGACTTCTGCACGCCGCAAGC
TTTCTAGACCAT
BO12823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 531 | CG6520-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
| insb-RA | 531 | CG6520-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-RB | 1059 | CG6520-RB | 306..834 | 16..544 | 2645 | 100 | Plus |
| insb-RA | 854 | CG6520-RA | 101..629 | 16..544 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17475439..17475967 | 544..16 | 2645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:57:49 has no hits.
BO12823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:38 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:20 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 95..630 | 16..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:29 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 102..629 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:39 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6520-RA | 95..630 | 16..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:13 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| insb-RA | 102..629 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:13 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17475436..17475966 | 17..546 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:29 Download gff for
BO12823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13362941..13363471 | 17..546 | 99 | | Minus |
BO12823.pep Sequence
Translation from 16 to 562
> BO12823.pep
MSGKLIMKRKRASQEEQQQAQEQRVQPQEQQQEQQPTEAVPEKRHRPLTP
PAEEPGQNCPNPPDAPNRILLEALQKIMELQAELDAFEQDLNDRDGYAAA
GAEAEDVEESDEDAEVAAQFAPPTPAQRSQAEALGFAMCARETLLFLQSE
GIPTESPLYQTLLGKLVGQSDGLLHAASFLDH
BO12823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| insb-PB | 176 | CG6520-PB | 1..176 | 1..176 | 899 | 100 | Plus |
| insb-PA | 176 | CG6520-PA | 1..176 | 1..176 | 899 | 100 | Plus |
